HEADER CELL ADHESION 18-FEB-15 5AIW TITLE NMR SOLUTION STRUCTURE OF THE PUTATIVE TRANSFER PROTEIN TRAH FROM TITLE 2 GRAM-POSITIVE CONJUGATIVE PLASMID PIP501 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 57-183; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS ENGEN0234; SOURCE 3 ORGANISM_TAXID: 1158552; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS CELL ADHESION, BACTERIAL, BACTERIAL CONJUGATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.H.MEYER,C.FERCHER,K.ZANGGER,W.KELLER REVDAT 4 14-JUN-23 5AIW 1 REMARK REVDAT 3 23-OCT-19 5AIW 1 REMARK ATOM REVDAT 2 04-MAY-16 5AIW 1 JRNL REVDAT 1 09-MAR-16 5AIW 0 JRNL AUTH C.FERCHER,I.PROBST,V.KOHLER,N.GOESSWEINER-MOHR,K.ARENDS, JRNL AUTH 2 E.GROHMANN,K.ZANGGER,N.H.MEYER,W.KELLER JRNL TITL VIRB8-LIKE PROTEIN TRAH IS CRUCIAL FOR DNA TRANSFER IN JRNL TITL 2 ENTEROCOCCUS FAECALIS. JRNL REF SCI.REP. V. 6 24643 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27103580 JRNL DOI 10.1038/SREP24643 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : RECOORD CNS CNS REMARK 3 AUTHORS : A.J. NEDERVEEN, J.F. DORELEIJERS, W.F. VRANKEN, Z. REMARK 3 MILLER, C.A.E.M. SPRONK, S.B. NABUURS, P. GUENTERT, REMARK 3 M. LIVNY, J.L. MARKLEY, M. NILGES, E.L. ULRICH, REMARK 3 R. KAPTEIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290063046. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% D2O, 90% WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CNS REMARK 210 METHOD USED : CYANA, CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED TRAH REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 GLU A 183 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 62 HZ1 LYS A 65 1.55 REMARK 500 HZ3 LYS A 156 OD1 ASP A 158 1.56 REMARK 500 OE1 GLU A 104 HH22 ARG A 175 1.56 REMARK 500 HZ2 LYS A 129 OE1 GLU A 160 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 18 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 85 96.46 72.13 REMARK 500 1 SER A 135 -53.18 -174.76 REMARK 500 1 LYS A 136 72.55 55.10 REMARK 500 1 ASN A 138 -17.18 73.89 REMARK 500 2 LYS A 79 -54.69 -140.39 REMARK 500 2 SER A 85 95.29 71.21 REMARK 500 2 SER A 135 -50.68 171.92 REMARK 500 2 ASP A 137 70.58 -69.01 REMARK 500 2 ASN A 138 -16.60 69.88 REMARK 500 3 ILE A 84 0.35 -69.92 REMARK 500 3 SER A 85 92.30 66.32 REMARK 500 4 THR A 58 -178.87 177.57 REMARK 500 4 ILE A 84 2.96 -64.02 REMARK 500 4 SER A 85 93.94 66.13 REMARK 500 4 LYS A 136 -70.76 68.35 REMARK 500 4 ASN A 138 8.06 54.42 REMARK 500 5 ASN A 57 -61.68 -133.31 REMARK 500 5 THR A 58 152.56 179.90 REMARK 500 5 GLN A 81 -7.58 -57.54 REMARK 500 5 SER A 85 92.40 64.59 REMARK 500 5 SER A 135 -60.41 -136.82 REMARK 500 6 ASN A 57 -80.30 -157.59 REMARK 500 6 THR A 58 159.02 179.03 REMARK 500 6 ASN A 59 161.23 176.17 REMARK 500 6 LYS A 79 -31.67 -132.03 REMARK 500 6 SER A 85 99.18 69.26 REMARK 500 6 SER A 135 -71.36 -170.08 REMARK 500 6 LYS A 136 -47.61 69.76 REMARK 500 6 ASN A 138 -18.13 71.23 REMARK 500 6 GLU A 182 78.63 80.14 REMARK 500 7 ASN A 57 -70.28 -127.49 REMARK 500 7 THR A 58 156.97 172.64 REMARK 500 7 SER A 85 91.11 68.49 REMARK 500 7 ASN A 138 -16.95 64.39 REMARK 500 8 LYS A 79 -42.62 -131.97 REMARK 500 8 SER A 85 89.85 66.59 REMARK 500 8 LYS A 136 -78.19 -106.43 REMARK 500 8 ASN A 138 15.26 47.95 REMARK 500 9 ASN A 57 14.21 -173.12 REMARK 500 9 THR A 58 126.25 67.42 REMARK 500 9 SER A 85 101.10 69.96 REMARK 500 10 LYS A 79 -33.47 -134.00 REMARK 500 10 SER A 85 93.65 66.16 REMARK 500 11 ASN A 57 -67.52 166.21 REMARK 500 11 THR A 58 150.59 162.15 REMARK 500 11 GLN A 81 -8.28 -58.20 REMARK 500 11 SER A 85 88.55 63.59 REMARK 500 11 ASN A 138 -16.91 74.86 REMARK 500 11 GLN A 174 138.19 -174.48 REMARK 500 12 ASN A 57 -6.57 -149.78 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 175 0.08 SIDE CHAIN REMARK 500 5 ARG A 175 0.10 SIDE CHAIN REMARK 500 7 ARG A 175 0.10 SIDE CHAIN REMARK 500 10 ARG A 175 0.12 SIDE CHAIN REMARK 500 12 ARG A 175 0.10 SIDE CHAIN REMARK 500 13 ARG A 175 0.08 SIDE CHAIN REMARK 500 14 ARG A 175 0.09 SIDE CHAIN REMARK 500 15 ARG A 175 0.10 SIDE CHAIN REMARK 500 17 ARG A 175 0.09 SIDE CHAIN REMARK 500 18 ARG A 175 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26518 RELATED DB: BMRB DBREF 5AIW A 57 183 UNP R4CA00 R4CA00_ENTFL 57 183 SEQADV 5AIW SER A 56 UNP R4CA00 EXPRESSION TAG SEQRES 1 A 128 SER ASN THR ASN GLN SER GLU SER GLU LYS ILE ILE LYS SEQRES 2 A 128 GLU PHE TYR LYS THR VAL TYR ASN TYR GLU LYS SER GLN SEQRES 3 A 128 LYS GLU ILE SER MET THR THR VAL LYS GLU LEU ALA THR SEQRES 4 A 128 ASP ASN VAL TYR GLN GLU LEU GLN ASN GLU ILE ASN VAL SEQRES 5 A 128 ASN ASN SER TYR SER PRO GLN GLN ASN THR ILE GLN LYS SEQRES 6 A 128 SER SER VAL ASN GLU ASN GLU ILE LYS ILE LEU ALA TYR SEQRES 7 A 128 GLU SER LYS ASP ASN SER GLN GLN TYR LEU VAL THR ALA SEQRES 8 A 128 PRO ILE HIS GLN VAL PHE ASN GLY THR LYS ASN ASP PHE SEQRES 9 A 128 GLU ILE ASN GLN LEU ILE GLN ILE LYS ASN GLN LYS ILE SEQRES 10 A 128 THR GLN ARG THR THR ILE GLN LEU GLY GLU GLU HELIX 1 1 ASN A 59 TYR A 75 1 17 HELIX 2 2 MET A 86 ALA A 93 1 8 HELIX 3 3 ASN A 96 SER A 110 1 15 SHEET 1 AA 2 GLN A 119 SER A 122 0 SHEET 2 AA 2 GLN A 140 PHE A 152 -1 O HIS A 149 N SER A 122 SHEET 1 AB 2 LYS A 129 ALA A 132 0 SHEET 2 AB 2 GLN A 140 PHE A 152 -1 O LEU A 143 N LEU A 131 SHEET 1 AC 4 LYS A 171 THR A 177 0 SHEET 2 AC 4 THR A 155 LYS A 168 -1 O LEU A 164 N THR A 176 SHEET 3 AC 4 GLN A 140 PHE A 152 -1 O GLN A 140 N ILE A 167 SHEET 4 AC 4 LYS A 129 ALA A 132 -1 O LYS A 129 N THR A 145 SHEET 1 AD 4 LYS A 171 THR A 177 0 SHEET 2 AD 4 THR A 155 LYS A 168 -1 O LEU A 164 N THR A 176 SHEET 3 AD 4 GLN A 140 PHE A 152 -1 O GLN A 140 N ILE A 167 SHEET 4 AD 4 GLN A 119 SER A 122 -1 O LYS A 120 N VAL A 151 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1