HEADER HYDROLASE 27-FEB-15 5AJU TITLE CRYSTAL STRUCTURE OF LIGAND-FREE PHOSPHORIBOHYDROXYLASE LONELY GUY TITLE 2 FROM CLAVICEPS PURPUREA IN COMPLEX WITH PHOSPHORIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOHYDROLASE LONELY GUY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLAVICEPS PURPUREA; SOURCE 3 ORGANISM_COMMON: ERGOT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5111; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, CYTOKININ, ROSSMAN FOLD, PROTEIN LONELY GUY, CLAVICEPS KEYWDS 2 PURPUREA, LYSINE DECARBOXYLASE, PHOSPHORIBOHYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DZUROVA,S.SAVINO,F.FORNERIS REVDAT 4 10-JAN-24 5AJU 1 HETSYN REVDAT 3 29-JUL-20 5AJU 1 REMARK SITE ATOM REVDAT 2 05-AUG-15 5AJU 1 JRNL REVDAT 1 03-JUN-15 5AJU 0 JRNL AUTH L.DZUROVA,F.FORNERIS,S.SAVINO,P.GALUSZKA,J.VRABKA,I.FREBORT JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF "LONELY GUY" FROM JRNL TITL 2 CLAVICEPS PURPUREA PROVIDES INSIGHTS INTO THE JRNL TITL 3 PHOSPHORIBOHYDROLASE FUNCTION OF ROSSMANN FOLD-CONTAINING JRNL TITL 4 LYSINE DECARBOXYLASE-LIKE PROTEINS. JRNL REF PROTEINS V. 83 1539 2015 JRNL REFN ISSN 0887-3585 JRNL PMID 26010010 JRNL DOI 10.1002/PROT.24835 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 8240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1559 - 3.6056 1.00 2711 141 0.1700 0.1946 REMARK 3 2 3.6056 - 2.8621 1.00 2586 142 0.2810 0.3038 REMARK 3 3 2.8621 - 2.5004 0.99 2539 121 0.3397 0.4057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1701 REMARK 3 ANGLE : 0.628 2293 REMARK 3 CHIRALITY : 0.024 254 REMARK 3 PLANARITY : 0.002 296 REMARK 3 DIHEDRAL : 12.793 618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3762 -20.3047 -26.6678 REMARK 3 T TENSOR REMARK 3 T11: 0.9042 T22: 0.5355 REMARK 3 T33: 0.6638 T12: 0.1064 REMARK 3 T13: 0.0142 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 0.7525 L22: 1.0267 REMARK 3 L33: 1.3308 L12: 0.7615 REMARK 3 L13: -0.9823 L23: -1.1423 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: 0.3541 S13: -0.2945 REMARK 3 S21: -0.3229 S22: 0.0008 S23: -0.1935 REMARK 3 S31: 0.8109 S32: 0.1437 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6911 -21.6517 -17.9217 REMARK 3 T TENSOR REMARK 3 T11: 0.8054 T22: 0.4279 REMARK 3 T33: 0.6079 T12: 0.1562 REMARK 3 T13: 0.0514 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7217 L22: 0.9104 REMARK 3 L33: 1.1993 L12: 0.5468 REMARK 3 L13: -0.8906 L23: -0.4032 REMARK 3 S TENSOR REMARK 3 S11: -0.1818 S12: -0.1079 S13: -0.2242 REMARK 3 S21: 0.2218 S22: -0.0329 S23: -0.0067 REMARK 3 S31: 0.6000 S32: 0.0241 S33: -0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0850 -17.7009 -9.5331 REMARK 3 T TENSOR REMARK 3 T11: 0.9863 T22: 0.5299 REMARK 3 T33: 0.6018 T12: 0.1712 REMARK 3 T13: 0.0313 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 1.9614 L22: 0.7468 REMARK 3 L33: 1.5184 L12: 0.6005 REMARK 3 L13: -1.2832 L23: -0.9933 REMARK 3 S TENSOR REMARK 3 S11: 0.3074 S12: -0.5647 S13: 0.0865 REMARK 3 S21: 0.2120 S22: -0.4473 S23: -0.2161 REMARK 3 S31: -0.1994 S32: -0.1811 S33: -0.0044 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5616 -8.2498 -24.1222 REMARK 3 T TENSOR REMARK 3 T11: 0.4949 T22: 0.5264 REMARK 3 T33: 0.5792 T12: 0.0495 REMARK 3 T13: -0.0604 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.4493 L22: 1.1368 REMARK 3 L33: 1.2269 L12: 0.4947 REMARK 3 L13: -0.1881 L23: -1.0267 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: 0.0005 S13: -0.1057 REMARK 3 S21: 0.0220 S22: -0.0529 S23: -0.2894 REMARK 3 S31: 0.1705 S32: 0.0230 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8274 1.7590 -32.9128 REMARK 3 T TENSOR REMARK 3 T11: 0.4669 T22: 0.7308 REMARK 3 T33: 0.5883 T12: 0.1075 REMARK 3 T13: -0.0076 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: 0.1865 REMARK 3 L33: 0.2617 L12: 0.0100 REMARK 3 L13: -0.0204 L23: -0.2461 REMARK 3 S TENSOR REMARK 3 S11: -0.2230 S12: -0.2467 S13: -0.2760 REMARK 3 S21: -0.2144 S22: 0.0251 S23: -0.5044 REMARK 3 S31: 0.2347 S32: 0.1628 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2561 -10.4357 -29.0676 REMARK 3 T TENSOR REMARK 3 T11: 0.7631 T22: 0.7231 REMARK 3 T33: 0.8826 T12: 0.2484 REMARK 3 T13: -0.0739 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.3156 L22: -0.0107 REMARK 3 L33: 0.8525 L12: 0.2247 REMARK 3 L13: -1.0693 L23: -0.2001 REMARK 3 S TENSOR REMARK 3 S11: -0.4534 S12: 0.0906 S13: -0.2363 REMARK 3 S21: 0.3164 S22: 0.1376 S23: -0.1400 REMARK 3 S31: -0.0124 S32: 0.1692 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290063167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 1.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5AJT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM AMMONIUM TARTRATE, 100MM REMARK 280 POTASSIUM SULFATE, 23% PEG3350, 17% GLYCEROL, 3% ETHYLENE GLYCOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.48500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.32000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.16000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.48500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.48000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.48000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.48500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.16000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 39.48500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.32000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 39.48500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.32000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 39.48500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 108.48000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.16000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 39.48500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.16000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 108.48000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.48500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 39.48500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1242 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2002 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 14 REMARK 465 ASN A 15 REMARK 465 GLY A 16 REMARK 465 ILE A 17 REMARK 465 ASN A 18 REMARK 465 THR A 19 REMARK 465 ASN A 20 REMARK 465 ALA A 21 REMARK 465 ASN A 22 REMARK 465 THR A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 SO4 A 1242 O3 SO4 A 1242 5454 0.07 REMARK 500 O1 SO4 A 1242 O4 SO4 A 1242 5454 0.10 REMARK 500 S SO4 A 1242 O1 SO4 A 1242 5454 1.46 REMARK 500 S SO4 A 1242 O3 SO4 A 1242 5454 1.46 REMARK 500 S SO4 A 1242 O2 SO4 A 1242 5454 1.46 REMARK 500 S SO4 A 1242 O4 SO4 A 1242 5454 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -70.53 -62.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AJT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LIGAND-FREE PHOSPHORIBOHYDROLASE LONELY GUY REMARK 900 FROM CLAVICEPS PURPUREA DBREF 5AJU A -33 240 UNP M1VUY5 M1VUY5_CLAP2 -33 240 SEQADV 5AJU MET A -33 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLY A -32 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU SER A -31 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU SER A -30 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU HIS A -29 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU HIS A -28 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU HIS A -27 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU HIS A -26 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU HIS A -25 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU HIS A -24 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU SER A -23 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU SER A -22 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLY A -21 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU LEU A -20 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU VAL A -19 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU PRO A -18 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU ARG A -17 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLY A -16 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU SER A -15 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU HIS A -14 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU MET A -13 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU ALA A -12 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU SER A -11 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU MET A -10 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU THR A -9 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLY A -8 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLY A -7 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLN A -6 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLN A -5 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU MET A -4 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLY A -3 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU ARG A -2 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU GLY A -1 UNP M1VUY5 EXPRESSION TAG SEQADV 5AJU SER A 0 UNP M1VUY5 EXPRESSION TAG SEQRES 1 A 274 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 274 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 274 GLY GLN GLN MET GLY ARG GLY SER MET SER SER ASN THR SEQRES 4 A 274 PRO ILE ALA GLY PRO GLN GLY PRO VAL ASN GLY ILE ASN SEQRES 5 A 274 THR ASN ALA ASN THR PRO ARG ALA LYS ILE CYS VAL PHE SEQRES 6 A 274 CYS GLY SER SER GLY GLY ALA SER PRO ALA HIS MET GLU SEQRES 7 A 274 ALA ALA ARG GLN LEU GLY ARG VAL MET ALA GLU ASN ASN SEQRES 8 A 274 ILE ASP LEU VAL TYR GLY GLY GLY THR VAL GLY LEU MET SEQRES 9 A 274 GLY GLU VAL ALA ARG THR VAL CYS SER ILE ASN GLY PRO SEQRES 10 A 274 GLU SER VAL HIS GLY ILE ILE PRO GLU ALA LEU VAL ARG SEQRES 11 A 274 TYR GLU ARG ASP GLY THR TYR GLN THR VAL LYS ASP ASN SEQRES 12 A 274 LYS GLN VAL VAL PRO THR GLU THR VAL TYR GLY ARG THR SEQRES 13 A 274 THR VAL VAL LYS ASP MET HIS THR ARG LYS LYS MET MET SEQRES 14 A 274 ALA GLU GLU VAL ILE SER GLY GLY PRO GLY SER GLY PHE SEQRES 15 A 274 ILE GLY LEU SER GLY GLY TYR GLY THR MET GLU GLU VAL SEQRES 16 A 274 PHE GLU VAL ILE THR TRP ASN GLN LEU GLY ILE HIS THR SEQRES 17 A 274 LYS GLY ILE CYS LEU LEU ASN VAL GLU GLY TYR TRP ASP SEQRES 18 A 274 GLY ILE LEU GLN TRP ILE ASN MET ALA ALA ALA GLN GLY SEQRES 19 A 274 PHE VAL GLN PRO GLY ASN GLU THR ILE VAL VAL SER ALA SEQRES 20 A 274 GLY ASP ALA GLU GLY ALA VAL ARG ALA LEU ARG GLU TYR SEQRES 21 A 274 LYS VAL SER GLU ALA THR PHE LYS LEU GLU TRP GLY ARG SEQRES 22 A 274 GLN HET RP5 A1241 14 HET SO4 A1242 5 HETNAM RP5 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE HETNAM SO4 SULFATE ION HETSYN RP5 [(2R,3S,4S,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2- HETSYN 2 RP5 YL]METHYL DIHYDROGEN PHOSPHATE; 5-O-PHOSPHONO-BETA-D- HETSYN 3 RP5 RIBOSE; 5-O-PHOSPHONO-D-RIBOSE; 5-O-PHOSPHONO-RIBOSE FORMUL 2 RP5 C5 H11 O8 P FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *2(H2 O) HELIX 1 1 PRO A 40 ASN A 56 1 17 HELIX 2 2 VAL A 67 GLY A 82 1 16 HELIX 3 3 ALA A 93 VAL A 95 5 3 HELIX 4 4 THR A 115 GLY A 120 1 6 HELIX 5 5 ASP A 127 SER A 141 1 15 HELIX 6 6 GLY A 154 LEU A 170 1 17 HELIX 7 7 TRP A 186 GLN A 199 1 14 HELIX 8 8 ASP A 215 GLU A 225 1 11 HELIX 9 9 VAL A 228 GLU A 236 1 9 SHEET 1 AA 7 ARG A 121 VAL A 125 0 SHEET 2 AA 7 VAL A 86 PRO A 91 1 O VAL A 86 N ARG A 121 SHEET 3 AA 7 ILE A 58 TYR A 62 1 O LEU A 60 N HIS A 87 SHEET 4 AA 7 ALA A 26 PHE A 31 1 O ALA A 26 N ASP A 59 SHEET 5 AA 7 GLY A 147 GLY A 150 1 O GLY A 147 N CYS A 29 SHEET 6 AA 7 GLY A 176 LEU A 180 1 O GLY A 176 N PHE A 148 SHEET 7 AA 7 VAL A 210 ALA A 213 1 O VAL A 211 N LEU A 179 SHEET 1 AB 2 THR A 105 VAL A 106 0 SHEET 2 AB 2 VAL A 112 VAL A 113 -1 O VAL A 113 N THR A 105 CRYST1 78.970 78.970 144.640 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012663 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006914 0.00000