HEADER UNKNOWN FUNCTION 04-MAR-15 5AKO TITLE THE COMPLEX OF TSE2 AND TSI2 FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TSI2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TSE2; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 11 ORGANISM_TAXID: 287; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS UNKNOWN FUNCTION, T6SS, IMMUNITY PROTEIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR C.S.ROBB,F.E.NANO,A.B.BORASTON REVDAT 5 10-JAN-24 5AKO 1 REMARK REVDAT 4 23-AUG-17 5AKO 1 REMARK REVDAT 3 02-MAR-16 5AKO 1 JRNL REVDAT 2 20-JAN-16 5AKO 1 JRNL REVDAT 1 23-DEC-15 5AKO 0 JRNL AUTH C.S.ROBB,M.ROBB,F.E.NANO,A.B.BORASTON JRNL TITL THE STRUCTURE OF THE TOXIN AND TYPE SIX SECRETION SYSTEM JRNL TITL 2 SUBSTRATE TSE2 IN COMPLEX WITH ITS IMMUNITY PROTEIN. JRNL REF STRUCTURE V. 24 277 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26749446 JRNL DOI 10.1016/J.STR.2015.11.012 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 16778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.81000 REMARK 3 B22 (A**2) : -2.66000 REMARK 3 B33 (A**2) : 9.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.182 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3510 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3257 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4790 ; 1.543 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7455 ; 1.020 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 6.875 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;36.793 ;24.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;14.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4071 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 773 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5AKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : K-B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17725 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 35.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3VPV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS PH 8.5, 0.2 M NACL, 22% PEG REMARK 280 4K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.86250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.32100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.56900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.32100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.86250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.56900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 76 REMARK 465 SER A 77 REMARK 465 ALA B 76 REMARK 465 SER B 77 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 MET C 2 REMARK 465 GLU C 38 REMARK 465 ALA C 39 REMARK 465 ALA C 40 REMARK 465 LEU C 159 REMARK 465 MET D -19 REMARK 465 GLY D -18 REMARK 465 SER D -17 REMARK 465 SER D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 GLY D -7 REMARK 465 LEU D -6 REMARK 465 VAL D -5 REMARK 465 PRO D -4 REMARK 465 ARG D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 MET D 2 REMARK 465 GLU D 38 REMARK 465 ALA D 39 REMARK 465 ALA D 40 REMARK 465 LEU D 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 GLN A 27 CG CD OE1 NE2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 GLU A 36 CD OE1 OE2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 GLU A 74 CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 GLU B 56 CD OE1 OE2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 SER C 3 OG REMARK 470 LYS C 8 CD CE NZ REMARK 470 LYS C 19 CG CD CE NZ REMARK 470 ASP C 23 CG OD1 OD2 REMARK 470 ARG C 28 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 31 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 33 CG OD1 OD2 REMARK 470 LYS C 34 CG CD CE NZ REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 LEU C 36 CG CD1 CD2 REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 THR C 55 OG1 CG2 REMARK 470 ARG C 61 CD NE CZ NH1 NH2 REMARK 470 ARG C 90 CZ NH1 NH2 REMARK 470 ARG C 157 CG CD NE CZ NH1 NH2 REMARK 470 SER D 3 OG REMARK 470 GLU D 7 CG CD OE1 OE2 REMARK 470 LYS D 8 CG CD CE NZ REMARK 470 LYS D 19 CG CD CE NZ REMARK 470 ASP D 33 CG OD1 OD2 REMARK 470 LYS D 34 CG CD CE NZ REMARK 470 LEU D 36 CG CD1 CD2 REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 ARG D 61 CG CD NE CZ NH1 NH2 REMARK 470 TRP D 153 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 153 CZ3 CH2 REMARK 470 ARG D 157 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 69 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 MET D 127 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 33 56.54 -119.79 REMARK 500 ASP C 23 73.10 -101.27 REMARK 500 ASP C 33 -88.70 -99.72 REMARK 500 LEU C 36 71.36 -102.49 REMARK 500 ASP C 113 -149.76 -104.90 REMARK 500 GLU D 35 39.19 -148.44 REMARK 500 ASP D 113 -150.78 -102.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 5AKO A 1 77 UNP Q9I0D9 Q9I0D9_PSEAE 1 77 DBREF 5AKO B 1 77 UNP Q9I0D9 Q9I0D9_PSEAE 1 77 DBREF 5AKO C 2 159 UNP Q9I0E0 Q9I0E0_PSEAE 1 158 DBREF 5AKO D 2 159 UNP Q9I0E0 Q9I0E0_PSEAE 1 158 SEQADV 5AKO MET C -19 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO GLY C -18 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER C -17 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER C -16 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS C -15 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS C -14 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS C -13 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS C -12 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS C -11 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS C -10 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER C -9 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER C -8 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO GLY C -7 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO LEU C -6 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO VAL C -5 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO PRO C -4 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO ARG C -3 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO GLY C -2 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER C -1 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS C 0 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO MET C 1 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO MET D -19 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO GLY D -18 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER D -17 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER D -16 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS D -15 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS D -14 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS D -13 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS D -12 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS D -11 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS D -10 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER D -9 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER D -8 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO GLY D -7 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO LEU D -6 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO VAL D -5 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO PRO D -4 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO ARG D -3 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO GLY D -2 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO SER D -1 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO HIS D 0 UNP Q9I0E0 EXPRESSION TAG SEQADV 5AKO MET D 1 UNP Q9I0E0 EXPRESSION TAG SEQRES 1 A 77 MET ASN LEU LYS PRO GLN THR LEU MET VAL ALA ILE GLN SEQRES 2 A 77 CYS VAL ALA ALA ARG THR ARG GLU LEU ASP ALA GLN LEU SEQRES 3 A 77 GLN ASN ASP ASP PRO GLN ASN ALA ALA GLU LEU GLU GLN SEQRES 4 A 77 LEU LEU VAL GLY TYR ASP LEU ALA ALA ASP ASP LEU LYS SEQRES 5 A 77 ASN ALA TYR GLU GLN ALA LEU GLY GLN TYR SER GLY LEU SEQRES 6 A 77 PRO PRO TYR ASP ARG LEU ILE GLU GLU PRO ALA SER SEQRES 1 B 77 MET ASN LEU LYS PRO GLN THR LEU MET VAL ALA ILE GLN SEQRES 2 B 77 CYS VAL ALA ALA ARG THR ARG GLU LEU ASP ALA GLN LEU SEQRES 3 B 77 GLN ASN ASP ASP PRO GLN ASN ALA ALA GLU LEU GLU GLN SEQRES 4 B 77 LEU LEU VAL GLY TYR ASP LEU ALA ALA ASP ASP LEU LYS SEQRES 5 B 77 ASN ALA TYR GLU GLN ALA LEU GLY GLN TYR SER GLY LEU SEQRES 6 B 77 PRO PRO TYR ASP ARG LEU ILE GLU GLU PRO ALA SER SEQRES 1 C 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 179 LEU VAL PRO ARG GLY SER HIS MET MET SER TYR ASP TYR SEQRES 3 C 179 GLU LYS THR SER LEU THR LEU TYR ARG ALA VAL PHE LYS SEQRES 4 C 179 ALA ASN TYR ASP GLY ASP VAL GLY ARG TYR LEU HIS PRO SEQRES 5 C 179 ASP LYS GLU LEU ALA GLU ALA ALA GLU VAL ALA PRO LEU SEQRES 6 C 179 LEU HIS PRO THR PHE ASP SER PRO ASN THR PRO GLY VAL SEQRES 7 C 179 PRO ALA ARG ALA PRO ASP ILE VAL ALA GLY ARG ASP GLY SEQRES 8 C 179 LEU TYR ALA PRO ASP THR GLY GLY THR SER VAL PHE ASP SEQRES 9 C 179 ARG ALA GLY VAL LEU ARG ARG ALA ASP GLY ASP PHE VAL SEQRES 10 C 179 ILE PRO ASP GLY THR ASP ILE PRO PRO ASP LEU LYS VAL SEQRES 11 C 179 LYS GLN ASP SER TYR ASN LYS ARG LEU GLN ALA THR HIS SEQRES 12 C 179 TYR THR ILE MET PRO ALA LYS PRO MET TYR ARG GLU VAL SEQRES 13 C 179 LEU MET GLY GLN LEU ASP ASN PHE VAL ARG ASN ALA ILE SEQRES 14 C 179 ARG ARG GLN TRP GLU LYS ALA ARG GLY LEU SEQRES 1 D 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 179 LEU VAL PRO ARG GLY SER HIS MET MET SER TYR ASP TYR SEQRES 3 D 179 GLU LYS THR SER LEU THR LEU TYR ARG ALA VAL PHE LYS SEQRES 4 D 179 ALA ASN TYR ASP GLY ASP VAL GLY ARG TYR LEU HIS PRO SEQRES 5 D 179 ASP LYS GLU LEU ALA GLU ALA ALA GLU VAL ALA PRO LEU SEQRES 6 D 179 LEU HIS PRO THR PHE ASP SER PRO ASN THR PRO GLY VAL SEQRES 7 D 179 PRO ALA ARG ALA PRO ASP ILE VAL ALA GLY ARG ASP GLY SEQRES 8 D 179 LEU TYR ALA PRO ASP THR GLY GLY THR SER VAL PHE ASP SEQRES 9 D 179 ARG ALA GLY VAL LEU ARG ARG ALA ASP GLY ASP PHE VAL SEQRES 10 D 179 ILE PRO ASP GLY THR ASP ILE PRO PRO ASP LEU LYS VAL SEQRES 11 D 179 LYS GLN ASP SER TYR ASN LYS ARG LEU GLN ALA THR HIS SEQRES 12 D 179 TYR THR ILE MET PRO ALA LYS PRO MET TYR ARG GLU VAL SEQRES 13 D 179 LEU MET GLY GLN LEU ASP ASN PHE VAL ARG ASN ALA ILE SEQRES 14 D 179 ARG ARG GLN TRP GLU LYS ALA ARG GLY LEU FORMUL 5 HOH *74(H2 O) HELIX 1 1 LYS A 4 ASP A 29 1 26 HELIX 2 2 ASN A 33 TYR A 62 1 30 HELIX 3 3 PRO A 67 ILE A 72 1 6 HELIX 4 4 LYS B 4 ASP B 29 1 26 HELIX 5 5 ASN B 33 GLY B 60 1 28 HELIX 6 6 PRO B 67 ILE B 72 1 6 HELIX 7 7 PHE C 18 TYR C 22 5 5 HELIX 8 8 VAL C 26 LEU C 30 5 5 HELIX 9 9 TYR C 133 ARG C 157 1 25 HELIX 10 10 PHE D 18 TYR D 22 5 5 HELIX 11 11 VAL D 26 HIS D 31 5 6 HELIX 12 12 TYR D 133 ARG D 157 1 25 SHEET 1 CA 4 TYR C 4 ASP C 5 0 SHEET 2 CA 4 LEU C 108 ASN C 116 -1 O VAL C 110 N ASP C 5 SHEET 3 CA 4 ALA C 121 PRO C 128 -1 O ALA C 121 N ASN C 116 SHEET 4 CA 4 THR C 80 PHE C 83 -1 O THR C 80 N ILE C 126 SHEET 1 CB 2 LEU C 13 VAL C 17 0 SHEET 2 CB 2 GLY C 94 ILE C 98 -1 O GLY C 94 N VAL C 17 SHEET 1 DA 4 TYR D 4 ASP D 5 0 SHEET 2 DA 4 LEU D 108 ASN D 116 -1 O VAL D 110 N ASP D 5 SHEET 3 DA 4 ALA D 121 PRO D 128 -1 O ALA D 121 N ASN D 116 SHEET 4 DA 4 THR D 80 PHE D 83 -1 O THR D 80 N ILE D 126 SHEET 1 DB 2 LEU D 13 VAL D 17 0 SHEET 2 DB 2 GLY D 94 ILE D 98 -1 O GLY D 94 N VAL D 17 CRYST1 37.725 103.138 114.642 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008723 0.00000