HEADER TRANSPORT PROTEIN 05-MAR-15 5AKT TITLE TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY OF TITLE 2 NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-4'-O- TITLE 3 GLUCURONIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-147; COMPND 5 SYNONYM: ATTR, PREALBUMIN, TBPA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS TRANSPORT PROTEIN, AMYLOID, FIBRILLOGENESIS, FIBRILLOGENESIS KEYWDS 2 INHIBITORS, POLYPHENOLS, POLYPHENOL METABOLITES, NEGATIVE KEYWDS 3 COOPERATIVITY EXPDTA X-RAY DIFFRACTION AUTHOR P.FLORIO,C.FOLLI,M.CIANCI,D.DEL RIO,G.ZANOTTI,R.BERNI REVDAT 6 10-JAN-24 5AKT 1 REMARK REVDAT 5 15-MAY-19 5AKT 1 REMARK REVDAT 4 07-MAR-18 5AKT 1 SOURCE REMARK REVDAT 3 13-JAN-16 5AKT 1 JRNL REVDAT 2 28-OCT-15 5AKT 1 JRNL REVDAT 1 21-OCT-15 5AKT 0 JRNL AUTH P.FLORIO,C.FOLLI,M.CIANCI,D.DEL RIO,G.ZANOTTI,R.BERNI JRNL TITL TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC JRNL TITL 2 ACTIVITY OF NATURAL POLYPHENOLS AND THEIR METABOLITES JRNL REF J.BIOL.CHEM. V. 290 29769 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26468275 JRNL DOI 10.1074/JBC.M115.690172 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 51383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.7429 - 3.6021 0.98 2748 156 0.1515 0.1936 REMARK 3 2 3.6021 - 2.8591 0.99 2668 125 0.1536 0.1917 REMARK 3 3 2.8591 - 2.4977 0.98 2594 145 0.1639 0.1708 REMARK 3 4 2.4977 - 2.2693 0.99 2598 138 0.1574 0.1625 REMARK 3 5 2.2693 - 2.1067 0.98 2603 125 0.1766 0.2117 REMARK 3 6 2.1067 - 1.9824 1.00 2601 116 0.1584 0.1303 REMARK 3 7 1.9824 - 1.8831 0.95 2458 134 0.1896 0.2333 REMARK 3 8 1.8831 - 1.8012 0.99 2537 153 0.1715 0.2080 REMARK 3 9 1.8012 - 1.7318 1.00 2577 140 0.1813 0.1956 REMARK 3 10 1.7318 - 1.6721 1.00 2583 125 0.1785 0.1834 REMARK 3 11 1.6721 - 1.6198 0.99 2586 135 0.1824 0.2177 REMARK 3 12 1.6198 - 1.5735 0.99 2499 140 0.1836 0.1948 REMARK 3 13 1.5735 - 1.5320 0.99 2545 159 0.1938 0.2096 REMARK 3 14 1.5320 - 1.4947 0.98 2538 122 0.2065 0.2090 REMARK 3 15 1.4947 - 1.4607 0.99 2512 149 0.2385 0.2566 REMARK 3 16 1.4607 - 1.4296 0.99 2541 142 0.2342 0.2676 REMARK 3 17 1.4296 - 1.4010 0.99 2543 132 0.2374 0.2598 REMARK 3 18 1.4010 - 1.3746 0.99 2540 139 0.2457 0.2407 REMARK 3 19 1.3746 - 1.3500 0.99 2486 151 0.2341 0.2488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2298 REMARK 3 ANGLE : 1.518 3187 REMARK 3 CHIRALITY : 0.076 353 REMARK 3 PLANARITY : 0.009 418 REMARK 3 DIHEDRAL : 14.045 857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KB MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 63.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1F41 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF WT HUMAN TTR- LIGAND REMARK 280 COMPLEXES WERE OBTAINED AT ROOM TEMPERATURE IN ABOUT ONE WEEK BY REMARK 280 CO-CRYSTALLIZATION, USING THE HANGING-DROP VAPOR DIFFUSION REMARK 280 METHOD. THE PROTEIN (5 MG/ML), IN 20 MM SODIUM PHOSPHATE, PH 7, REMARK 280 WAS INCUBATED WITH A FOUR-FOLD MOLAR EXCESS OF LIGANDS REMARK 280 SOLUBILIZED IN DMSO. DROPS WERE FORMED BY MIXING EQUAL VOLUMES REMARK 280 OF THE SOLUTION CONTAINING LIGAND-TTR COMPLEXES AND OF THE REMARK 280 RESERVOIR/PRECIPITANT SOLUTION (2.2 M AMMONIUM SULPHATE, 0.1 M REMARK 280 KCL, 0.03 M SODIUM PHOSPHATE, PH 7.0)., VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.37050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.74800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.37050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.74800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.74100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.49600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CAI R4G A1128 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2153 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2037 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2154 O HOH B 2101 1.90 REMARK 500 O HOH A 2152 O HOH B 2102 1.94 REMARK 500 O HOH A 2059 O HOH A 2060 1.96 REMARK 500 O HOH A 2150 O HOH A 2151 1.97 REMARK 500 O HOH A 2011 O HOH A 2110 1.98 REMARK 500 O HOH A 2026 O HOH A 2027 2.02 REMARK 500 O GLY B 101 O HOH B 2093 2.06 REMARK 500 O ILE A 84 O HOH A 2114 2.07 REMARK 500 OE2 GLU A 63 O HOH A 2056 2.07 REMARK 500 OE2 GLU B 72 O HOH A 2162 2.08 REMARK 500 O HOH A 2011 O HOH A 2104 2.09 REMARK 500 O HOH A 2077 O HOH A 2078 2.11 REMARK 500 OG SER B 115 O HOH B 2101 2.11 REMARK 500 OE2 GLU A 92 O HOH A 2094 2.12 REMARK 500 OE2 GLU A 63 O HOH A 2086 2.12 REMARK 500 NZ LYS A 80 O HOH A 2098 2.15 REMARK 500 OD2 ASP A 99 O HOH A 2135 2.16 REMARK 500 O GLY A 83 O HOH A 2113 2.16 REMARK 500 O HOH B 2033 O HOH B 2035 2.18 REMARK 500 OD1 ASN A 27 O HOH A 2028 2.18 REMARK 500 OE2 GLU B 63 O HOH B 2044 2.18 REMARK 500 O HOH B 2087 O HOH B 2088 2.19 REMARK 500 O HOH A 2050 O HOH B 2100 2.19 REMARK 500 O HOH A 2018 O HOH A 2019 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2040 O HOH A 2058 4456 1.91 REMARK 500 O HOH A 2036 O HOH A 2080 4556 2.10 REMARK 500 O HOH A 2009 O HOH A 2160 2665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 13.06 82.99 REMARK 500 SER A 85 85.42 54.11 REMARK 500 SER B 100 88.58 -59.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2037 DISTANCE = 7.27 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R4G B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R4G A 1128 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AKS RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-3-O- REMARK 900 GLUCURONIDE REMARK 900 RELATED ID: 5AKV RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: GENISTEIN-7-O- REMARK 900 GLUCURONIDE REMARK 900 RELATED ID: 5AL0 RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-3-O- REMARK 900 SULFATE REMARK 900 RELATED ID: 5AL8 RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: DAIDZEIN-7-O- REMARK 900 GLUCURONIDE DBREF 5AKT A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 5AKT B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU HET SO4 A1126 5 HET SO4 A1127 5 HET R4G A1128 29 HET R4G B1128 29 HETNAM SO4 SULFATE ION HETNAM R4G RESVERATROL-4'-O-GLUCURONIDE FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 R4G 2(C20 H20 O9) FORMUL 7 HOH *271(H2 O) HELIX 1 1 ASP A 74 ALA A 81 1 8 HELIX 2 2 ASP B 74 LEU B 82 1 9 SHEET 1 AA 2 SER A 23 PRO A 24 0 SHEET 2 AA 2 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 1 AB 2 GLU A 54 LEU A 55 0 SHEET 2 AB 2 LEU A 12 ASP A 18 -1 O VAL A 14 N LEU A 55 SHEET 1 BA 2 SER B 23 PRO B 24 0 SHEET 2 BA 2 LEU B 12 ASP B 18 -1 N ASP B 18 O SER B 23 SHEET 1 BB 2 GLU B 54 LEU B 55 0 SHEET 2 BB 2 LEU B 12 ASP B 18 -1 O VAL B 14 N LEU B 55 SHEET 1 AC 8 TRP A 41 LYS A 48 0 SHEET 2 AC 8 ALA A 29 LYS A 35 -1 O VAL A 30 N GLY A 47 SHEET 3 AC 8 GLY A 67 ILE A 73 -1 O ILE A 68 N LYS A 35 SHEET 4 AC 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 AC 8 HIS B 88 ALA B 97 -1 N GLU B 89 O VAL A 94 SHEET 6 AC 8 GLY B 67 ILE B 73 -1 O GLY B 67 N ALA B 97 SHEET 7 AC 8 ALA B 29 LYS B 35 -1 O HIS B 31 N GLU B 72 SHEET 8 AC 8 TRP B 41 LYS B 48 -1 O GLU B 42 N ARG B 34 SITE 1 AC1 7 LYS A 35 TRP A 41 HOH A2093 HOH A2161 SITE 2 AC1 7 HOH A2162 GLU B 72 HIS B 90 SITE 1 AC2 10 GLU A 72 HIS A 90 GLU A 92 HOH A2091 SITE 2 AC2 10 HOH A2094 HOH A2095 HOH A2163 HOH A2164 SITE 3 AC2 10 LYS B 35 TRP B 41 SITE 1 AC3 9 LYS B 15 LEU B 17 GLU B 54 LEU B 110 SITE 2 AC3 9 SER B 117 THR B 118 THR B 119 HOH B2105 SITE 3 AC3 9 HOH B2106 SITE 1 AC4 10 MET A 13 LYS A 15 LEU A 17 SER A 52 SITE 2 AC4 10 GLU A 54 LEU A 110 SER A 117 HOH A2005 SITE 3 AC4 10 HOH A2147 HOH A2165 CRYST1 42.741 85.496 63.672 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023397 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015705 0.00000