HEADER OXIDOREDUCTASE 07-MAR-15 5AL9 TITLE STRUCTURE OF LEISHMANIA MAJOR PEROXIDASE D211R MUTANT (HIGH RES) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASCORBATE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN, RESIDUES 35-303; COMPND 5 SYNONYM: CYTOCHROME C PEROXIDASE; COMPND 6 EC: 1.11.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.CHREIFI,S.A.HOLLINGSWORTH,H.LI,S.TRIPATHI,A.P.ARCE,H.I.MAGANA- AUTHOR 2 GARCIA,T.L.POULOS REVDAT 4 10-JAN-24 5AL9 1 REMARK LINK REVDAT 3 09-OCT-19 5AL9 1 JRNL REVDAT 2 17-JUN-15 5AL9 1 JRNL REVDAT 1 20-MAY-15 5AL9 0 JRNL AUTH G.CHREIFI,S.A.HOLLINGSWORTH,H.LI,S.TRIPATHI,A.P.ARCE, JRNL AUTH 2 H.I.MAGANA-GARCIA,T.L.POULOS JRNL TITL ENZYMATIC MECHANISM OF LEISHMANIA MAJOR PEROXIDASE AND THE JRNL TITL 2 CRITICAL ROLE OF SPECIFIC IONIC INTERACTIONS. JRNL REF BIOCHEMISTRY V. 54 3328 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25941976 JRNL DOI 10.1021/ACS.BIOCHEM.5B00338 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 60860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5235 - 4.2547 0.87 3361 174 0.1855 0.1624 REMARK 3 2 4.2547 - 3.3779 0.98 3788 194 0.1529 0.1563 REMARK 3 3 3.3779 - 2.9511 0.97 3758 185 0.1705 0.1885 REMARK 3 4 2.9511 - 2.6814 0.98 3786 201 0.1681 0.2027 REMARK 3 5 2.6814 - 2.4892 0.98 3755 204 0.1716 0.2379 REMARK 3 6 2.4892 - 2.3425 0.98 3780 187 0.1690 0.2063 REMARK 3 7 2.3425 - 2.2252 0.98 3775 207 0.1662 0.2140 REMARK 3 8 2.2252 - 2.1284 0.98 3771 200 0.1681 0.1811 REMARK 3 9 2.1284 - 2.0464 0.98 3828 196 0.1604 0.1831 REMARK 3 10 2.0464 - 1.9758 0.99 3778 215 0.1628 0.1735 REMARK 3 11 1.9758 - 1.9140 0.99 3825 189 0.1657 0.1952 REMARK 3 12 1.9140 - 1.8593 0.99 3816 201 0.1788 0.2231 REMARK 3 13 1.8593 - 1.8104 0.99 3787 197 0.1832 0.2077 REMARK 3 14 1.8104 - 1.7662 0.99 3838 225 0.1890 0.2185 REMARK 3 15 1.7662 - 1.7261 0.99 3800 196 0.1893 0.2020 REMARK 3 16 1.7261 - 1.6893 0.99 3860 207 0.1968 0.2127 REMARK 3 17 1.6893 - 1.6555 0.99 3744 176 0.2017 0.2116 REMARK 3 18 1.6555 - 1.6243 0.99 3896 200 0.2031 0.2166 REMARK 3 19 1.6243 - 1.5953 0.99 3734 198 0.2117 0.2055 REMARK 3 20 1.5953 - 1.5682 0.99 3878 203 0.2139 0.2168 REMARK 3 21 1.5682 - 1.5429 0.99 3863 196 0.2276 0.2737 REMARK 3 22 1.5429 - 1.5192 0.99 3722 207 0.2343 0.2638 REMARK 3 23 1.5192 - 1.4969 0.98 3826 225 0.2356 0.2566 REMARK 3 24 1.4969 - 1.4758 0.99 3771 177 0.2479 0.2910 REMARK 3 25 1.4758 - 1.4558 0.99 3766 236 0.2480 0.2350 REMARK 3 26 1.4558 - 1.4369 0.99 3876 203 0.2560 0.2782 REMARK 3 27 1.4369 - 1.4190 0.99 3779 184 0.2786 0.2738 REMARK 3 28 1.4190 - 1.4019 0.99 3783 222 0.2825 0.3274 REMARK 3 29 1.4019 - 1.3856 0.99 3816 258 0.3047 0.2638 REMARK 3 30 1.3856 - 1.3700 0.97 3647 186 0.3231 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 2257 REMARK 3 ANGLE : 1.118 3077 REMARK 3 CHIRALITY : 0.074 309 REMARK 3 PLANARITY : 0.006 394 REMARK 3 DIHEDRAL : 13.820 834 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -23.5726 -9.5031 15.9810 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.0610 REMARK 3 T33: 0.0534 T12: 0.0199 REMARK 3 T13: -0.0023 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.4382 L22: 1.0926 REMARK 3 L33: 0.7584 L12: 0.6018 REMARK 3 L13: -0.0037 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.0022 S13: -0.0291 REMARK 3 S21: -0.0204 S22: 0.0345 S23: -0.0017 REMARK 3 S31: 0.0381 S32: 0.0651 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 301-303 ARE DISORDERED. REMARK 4 REMARK 4 5AL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 53.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3RIV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG MME 5000, 0.1M MES:NAOH PH REMARK 280 6.5, 5% DMSO, 7.5 MM PRASEODIMIUM(III) ACETATE HYDRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.21950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.21950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -4.83689 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.29916 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 301 REMARK 465 GLU A 302 REMARK 465 SER A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2059 O HOH A 2060 1.92 REMARK 500 O SER A 81 O HOH A 2059 2.02 REMARK 500 OG SER A 86 O HOH A 2059 2.08 REMARK 500 OE2 GLU A 69 O HOH A 2059 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2008 O HOH A 2218 4446 2.15 REMARK 500 O HOH A 2065 O HOH A 2216 4446 2.16 REMARK 500 O HOH A 2065 O HOH A 2107 4446 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 55 86.65 -152.32 REMARK 500 SER A 81 57.37 36.77 REMARK 500 THR A 167 -149.27 -120.93 REMARK 500 ASP A 216 -166.53 -169.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PROTOPORPHYRIN IX CONTAINING FE (HEM): THERE IS A POSITIVE REMARK 600 DENSITY CONSISTENT WITH A DIATOMIC MOLECULE COVALENTLY REMARK 600 LINKED TO THE HEME MESO- CARBON CHB REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 69 O REMARK 620 2 SER A 72 OG 84.8 REMARK 620 3 GLU A 92 OE2 129.7 119.9 REMARK 620 4 HOH A2059 O 94.6 109.5 113.4 REMARK 620 5 HOH A2060 O 127.1 78.5 101.7 47.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 HEM A 305 NA 95.5 REMARK 620 3 HEM A 305 NB 92.9 89.7 REMARK 620 4 HEM A 305 NC 91.7 172.7 89.0 REMARK 620 5 HEM A 305 ND 97.9 90.3 169.2 89.7 REMARK 620 6 HOH A2054 O 174.7 81.2 83.0 91.5 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 310 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 193 O REMARK 620 2 THR A 193 OG1 72.0 REMARK 620 3 THR A 209 OG1 67.6 97.6 REMARK 620 4 ARG A 211 O 107.3 177.5 84.3 REMARK 620 5 GLY A 214 O 94.8 85.9 159.7 91.8 REMARK 620 6 HOH A2194 O 151.8 84.0 102.1 97.2 98.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ALA RELATED DB: PDB REMARK 900 STRUCTURE OF LEISHMANIA MAJOR PEROXIDASE D211R MUTANT ( LOW RES) DBREF 5AL9 A 35 303 UNP Q4Q3K2 Q4Q3K2_LEIMA 35 303 SEQADV 5AL9 SER A 34 UNP Q4Q3K2 EXPRESSION TAG SEQADV 5AL9 ARG A 211 UNP Q4Q3K2 ASP 211 ENGINEERED MUTATION SEQRES 1 A 270 SER GLU GLU PRO PRO PHE ASP ILE ARG ALA LEU ARG ALA SEQRES 2 A 270 ASP ILE GLU ASP MET ILE SER GLU LYS LEU GLU LEU GLY SEQRES 3 A 270 PRO SER LEU ILE ARG LEU ALA TRP HIS GLU ALA ALA SER SEQRES 4 A 270 TYR ASP CYS PHE LYS LYS ASP GLY SER PRO ASN SER ALA SEQRES 5 A 270 SER MET ARG PHE LYS PRO GLU CYS LEU TYR ALA GLY ASN SEQRES 6 A 270 LYS GLY LEU ASP ILE PRO ARG LYS ALA LEU GLU THR LEU SEQRES 7 A 270 LYS LYS LYS TYR PRO GLN ILE SER TYR ALA ASP LEU TRP SEQRES 8 A 270 VAL LEU ALA ALA TYR VAL ALA ILE GLU TYR MET GLY GLY SEQRES 9 A 270 PRO THR ILE PRO PHE CYS TRP GLY ARG VAL ASP ALA LYS SEQRES 10 A 270 ASP GLY SER VAL CYS GLY PRO ASP GLY ARG LEU PRO ASP SEQRES 11 A 270 GLY SER LYS THR GLN SER HIS VAL ARG GLU VAL PHE ARG SEQRES 12 A 270 ARG LEU GLY PHE ASN ASP GLN GLU THR VAL ALA LEU ILE SEQRES 13 A 270 GLY ALA HIS THR CYS GLY GLU CYS HIS ILE GLU PHE SER SEQRES 14 A 270 GLY TYR HIS GLY PRO TRP THR HIS ARG LYS ASN GLY PHE SEQRES 15 A 270 ASP ASN SER PHE PHE THR GLN LEU LEU ASP GLU ASP TRP SEQRES 16 A 270 VAL LEU ASN PRO LYS VAL GLU GLN MET GLN LEU MET ASP SEQRES 17 A 270 ARG ALA THR THR LYS LEU MET MET LEU PRO SER ASP VAL SEQRES 18 A 270 CYS LEU LEU LEU ASP PRO SER TYR ARG LYS TYR VAL GLU SEQRES 19 A 270 LEU TYR ALA LYS ASP ASN ASP ARG PHE ASN LYS ASP PHE SEQRES 20 A 270 ALA ASN ALA PHE LYS LYS LEU THR GLU LEU GLY THR ARG SEQRES 21 A 270 ASN LEU HIS LYS ALA PRO ALA SER GLU SER HET HEM A 305 43 HET CA A 307 1 HET K A 310 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CA CA 2+ FORMUL 4 K K 1+ FORMUL 5 HOH *277(H2 O) HELIX 1 1 ASP A 40 LYS A 55 1 16 HELIX 2 2 GLU A 57 ALA A 71 1 15 HELIX 3 3 ALA A 85 PHE A 89 5 5 HELIX 4 4 PRO A 91 TYR A 95 5 5 HELIX 5 5 TYR A 95 LYS A 99 5 5 HELIX 6 6 LEU A 101 TYR A 115 1 15 HELIX 7 7 SER A 119 MET A 135 1 17 HELIX 8 8 ASP A 151 CYS A 155 5 5 HELIX 9 9 THR A 167 GLY A 179 1 13 HELIX 10 10 ASN A 181 GLY A 190 1 10 HELIX 11 11 ALA A 191 CYS A 194 5 4 HELIX 12 12 HIS A 198 GLY A 203 1 6 HELIX 13 13 ASN A 217 GLU A 226 1 10 HELIX 14 14 LEU A 250 THR A 288 1 39 SHEET 1 AA 2 CYS A 143 TRP A 144 0 SHEET 2 AA 2 HIS A 296 LYS A 297 -1 O HIS A 296 N TRP A 144 SHEET 1 AB 2 GLU A 196 CYS A 197 0 SHEET 2 AB 2 GLY A 206 PRO A 207 -1 O GLY A 206 N CYS A 197 SHEET 1 AC 3 TRP A 228 LEU A 230 0 SHEET 2 AC 3 LEU A 239 ASP A 241 -1 O MET A 240 N VAL A 229 SHEET 3 AC 3 MET A 248 MET A 249 -1 O MET A 249 N LEU A 239 LINK O GLU A 69 CA CA A 307 1555 1555 2.68 LINK OG SER A 72 CA CA A 307 1555 1555 2.56 LINK OE2 GLU A 92 CA CA A 307 1555 1555 2.66 LINK NE2 HIS A 192 FE HEM A 305 1555 1555 2.10 LINK O THR A 193 K K A 310 1555 1555 2.27 LINK OG1 THR A 193 K K A 310 1555 1555 2.83 LINK OG1 THR A 209 K K A 310 1555 1555 2.82 LINK O ARG A 211 K K A 310 1555 1555 2.37 LINK O GLY A 214 K K A 310 1555 1555 2.38 LINK FE HEM A 305 O HOH A2054 1555 1555 2.18 LINK CA CA A 307 O HOH A2059 1555 1555 2.33 LINK CA CA A 307 O HOH A2060 1555 1555 2.43 LINK K K A 310 O HOH A2194 1555 1555 2.32 CISPEP 1 LYS A 90 PRO A 91 0 8.50 SITE 1 AC1 21 PRO A 60 SER A 61 TRP A 67 PRO A 162 SITE 2 AC1 21 GLY A 164 VAL A 171 LEU A 188 ALA A 191 SITE 3 AC1 21 HIS A 192 GLY A 195 GLU A 196 CYS A 197 SITE 4 AC1 21 HIS A 198 PHE A 201 SER A 202 TRP A 208 SITE 5 AC1 21 SER A 252 HOH A2045 HOH A2046 HOH A2050 SITE 6 AC1 21 HOH A2054 SITE 1 AC2 7 GLU A 69 SER A 72 SER A 81 SER A 86 SITE 2 AC2 7 GLU A 92 HOH A2059 HOH A2060 SITE 1 AC3 6 THR A 193 THR A 209 ARG A 211 GLY A 214 SITE 2 AC3 6 SER A 218 HOH A2194 CRYST1 142.439 57.860 36.620 90.00 97.59 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007021 0.000000 0.000935 0.00000 SCALE2 0.000000 0.017283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027549 0.00000