HEADER TRANSCRIPTION 10-MAR-15 5AME TITLE CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN SURFACE EPITOPE TITLE 2 ENGINEERED BRD1A IN COMPLEX WITH 3D CONSORTIUM FRAGMENT 4-ACETYL- TITLE 3 PIPERAZIN-2-ONE (SGC - DIAMOND I04-1 FRAGMENT SCREENING) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN AND PHD FINGER, RESIDUES 556-688; COMPND 5 SYNONYM: BRD1A, BR140-LIKE PROTEIN, BROMODOMAIN AND PHD FINGER- COMPND 6 CONTAINING PROTEIN 2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: SURFACE EPITOPE ENGINEERED P566E, V569R SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSCRIPTION, HISTONE-BINDING PROTEIN, BROMODOMAIN, EPIGENETIC, KEYWDS 2 FRAGMENTSCREENING, STRUCTURAL GENOMICS CONSORTIUM, SGC, DIAMOND I04- KEYWDS 3 1 EXPDTA X-RAY DIFFRACTION AUTHOR N.M.PEARCE,M.FAIRHEAD,C.STRAIN-DAMERELL,R.TALON,N.WRIGHT,J.T.NG, AUTHOR 2 A.BRADLEY,O.COX,D.BOWKETT,P.COLLINS,J.BRANDAO-NETO,A.DOUANGAMATH, AUTHOR 3 T.KROJER,N.BURGESS-BROWN,P.BRENNAN,C.H.ARROWSMITH,E.EDWARDS, AUTHOR 4 C.BOUNTRA,F.VON DELFT REVDAT 3 06-MAR-19 5AME 1 REMARK REVDAT 2 24-JAN-18 5AME 1 JRNL REVDAT 1 18-MAR-15 5AME 0 JRNL AUTH N.M.PEARCE,M.FAIRHEAD,C.STRAIN-DAMERELL,R.TALON,N.WRIGHT, JRNL AUTH 2 J.T.NG,A.BRADLEY,O.COX,D.BOWKETT,P.COLLINS,J.BRANDAO-NETO, JRNL AUTH 3 A.DOUANGAMATH,T.KROJER,N.BURGESS-BROWN,P.BRENNAN, JRNL AUTH 4 C.H.ARROWSMITH,E.EDWARDS,C.BOUNTRA,F.VON DELFT JRNL TITL CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN SURFACE JRNL TITL 2 EPITOPE ENGINEERED BRD1A IN COMPLEX WITH 3D CONSORTIUM JRNL TITL 3 FRAGMENT 4-ACETYL-PIPERAZIN-2-ONE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 44106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0642 - 3.8886 0.97 2935 156 0.1683 0.1763 REMARK 3 2 3.8886 - 3.0876 1.00 2899 135 0.1633 0.1893 REMARK 3 3 3.0876 - 2.6976 1.00 2857 154 0.1762 0.2033 REMARK 3 4 2.6976 - 2.4511 1.00 2813 187 0.1772 0.2301 REMARK 3 5 2.4511 - 2.2755 0.95 2707 128 0.1760 0.1806 REMARK 3 6 2.2755 - 2.1414 0.99 2826 109 0.1704 0.1852 REMARK 3 7 2.1414 - 2.0342 1.00 2811 153 0.1842 0.2201 REMARK 3 8 2.0342 - 1.9456 1.00 2816 146 0.1964 0.2152 REMARK 3 9 1.9456 - 1.8707 0.99 2825 138 0.2072 0.2660 REMARK 3 10 1.8707 - 1.8062 0.99 2744 170 0.2017 0.2528 REMARK 3 11 1.8062 - 1.7497 0.99 2796 139 0.2165 0.2125 REMARK 3 12 1.7497 - 1.6997 0.99 2792 137 0.2285 0.2466 REMARK 3 13 1.6997 - 1.6550 0.98 2717 148 0.2470 0.2270 REMARK 3 14 1.6550 - 1.6146 0.96 2690 122 0.2568 0.2875 REMARK 3 15 1.6146 - 1.5779 0.97 2732 124 0.2838 0.3048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2102 REMARK 3 ANGLE : 1.296 2849 REMARK 3 CHIRALITY : 0.058 314 REMARK 3 PLANARITY : 0.006 382 REMARK 3 DIHEDRAL : 13.888 828 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 22:60) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4218 -2.6660 7.6656 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.3605 REMARK 3 T33: 0.3728 T12: 0.0003 REMARK 3 T13: -0.0116 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.1116 L22: 1.2215 REMARK 3 L33: 0.1705 L12: -0.2909 REMARK 3 L13: -0.1434 L23: 0.5122 REMARK 3 S TENSOR REMARK 3 S11: 0.2425 S12: 0.1873 S13: -0.0214 REMARK 3 S21: -0.1122 S22: -0.2642 S23: -0.6132 REMARK 3 S31: 0.0139 S32: 0.4762 S33: 0.1633 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 61:107) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9904 4.6583 9.5137 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.1969 REMARK 3 T33: 0.1756 T12: -0.0233 REMARK 3 T13: 0.0008 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.4304 L22: 0.6548 REMARK 3 L33: 0.4368 L12: -0.1446 REMARK 3 L13: 0.1073 L23: 0.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: 0.0063 S13: -0.0010 REMARK 3 S21: 0.1135 S22: -0.0913 S23: -0.1401 REMARK 3 S31: -0.1625 S32: 0.0402 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 108:127) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9476 2.3870 -2.0278 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.2057 REMARK 3 T33: 0.1821 T12: 0.0123 REMARK 3 T13: 0.0090 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.3050 L22: 0.1525 REMARK 3 L33: 0.3570 L12: 0.2428 REMARK 3 L13: -0.1320 L23: -0.2198 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.2496 S13: -0.1535 REMARK 3 S21: 0.0886 S22: 0.1014 S23: 0.2204 REMARK 3 S31: 0.0368 S32: 0.0652 S33: 0.0195 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 128:144) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6674 -14.9942 7.9635 REMARK 3 T TENSOR REMARK 3 T11: 0.4053 T22: 0.3131 REMARK 3 T33: 0.5864 T12: 0.1228 REMARK 3 T13: -0.1488 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.5161 L22: 0.1942 REMARK 3 L33: 0.1052 L12: 0.3151 REMARK 3 L13: -0.1834 L23: -0.1119 REMARK 3 S TENSOR REMARK 3 S11: -0.3424 S12: -0.0251 S13: -0.1497 REMARK 3 S21: -0.0266 S22: -0.0106 S23: -1.1926 REMARK 3 S31: 0.5598 S32: -0.0286 S33: -0.0686 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 22:60) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6268 -4.4104 28.2775 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1683 REMARK 3 T33: 0.1985 T12: -0.0340 REMARK 3 T13: -0.0106 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4712 L22: 0.3142 REMARK 3 L33: 0.8123 L12: -0.1901 REMARK 3 L13: -0.5827 L23: 0.0262 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: -0.1165 S13: -0.0410 REMARK 3 S21: 0.0847 S22: 0.0844 S23: 0.0711 REMARK 3 S31: -0.1113 S32: -0.1956 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 61:107) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6325 -4.5213 14.8466 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1585 REMARK 3 T33: 0.1736 T12: 0.0240 REMARK 3 T13: -0.0101 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.1388 L22: 0.4958 REMARK 3 L33: 1.1866 L12: 0.4538 REMARK 3 L13: -0.3301 L23: -0.2732 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.0532 S13: -0.0335 REMARK 3 S21: -0.1298 S22: -0.0451 S23: -0.0614 REMARK 3 S31: 0.2512 S32: 0.0959 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 108:127) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4370 9.8757 10.0288 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1695 REMARK 3 T33: 0.1887 T12: 0.0346 REMARK 3 T13: -0.0041 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.2006 L22: 0.3831 REMARK 3 L33: 0.1126 L12: 0.1747 REMARK 3 L13: -0.0931 L23: -0.2708 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: 0.0668 S13: 0.0746 REMARK 3 S21: -0.1087 S22: -0.0903 S23: -0.0211 REMARK 3 S31: -0.0624 S32: -0.0414 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 128:144) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4596 1.9593 32.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.2486 T22: 0.2678 REMARK 3 T33: 0.2473 T12: -0.0443 REMARK 3 T13: -0.0452 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.1506 L22: 0.1267 REMARK 3 L33: 0.1758 L12: -0.0237 REMARK 3 L13: 0.1442 L23: 0.0820 REMARK 3 S TENSOR REMARK 3 S11: -0.1095 S12: 0.0215 S13: 0.1608 REMARK 3 S21: 0.2590 S22: -0.2257 S23: -0.4295 REMARK 3 S31: -0.3004 S32: 0.5442 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SGC - DIAMOND I04-1 FRAGMENT SCREENING REMARK 4 REMARK 4 5AME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44164 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 29.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.2 , 31% PEG3350, REMARK 280 293 K, 12 HOURS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.77700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.26850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.77700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.26850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 145 REMARK 465 ALA A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 MET A 149 REMARK 465 HIS A 150 REMARK 465 LEU A 151 REMARK 465 PRO A 152 REMARK 465 GLU A 153 REMARK 465 ARG A 154 REMARK 465 PRO A 155 REMARK 465 ALA A 156 REMARK 465 GLU B 145 REMARK 465 ALA B 146 REMARK 465 SER B 147 REMARK 465 GLY B 148 REMARK 465 MET B 149 REMARK 465 HIS B 150 REMARK 465 LEU B 151 REMARK 465 PRO B 152 REMARK 465 GLU B 153 REMARK 465 ARG B 154 REMARK 465 PRO B 155 REMARK 465 ALA B 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 CD OE1 NE2 REMARK 470 MET A 28 SD CE REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 ARG A 37 CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 141 CG1 CG2 CD1 REMARK 470 LEU A 143 CG CD1 CD2 REMARK 470 LYS B 62 CD CE NZ REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 66 O HOH A 2066 2.01 REMARK 500 O HOH B 2099 O HOH B 2100 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 113 58.90 -90.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 6.86 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 4-ACETYL-PIPERAZIN-2-ONE (PW3): 3D CONSORTIUM FRAGMENT, SGC REMARK 600 NAMES N10982A FMO3D000294A REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1146 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 110 O REMARK 620 2 HOH A2109 O 104.1 REMARK 620 3 MET B 107 O 86.7 104.5 REMARK 620 4 HOH A2110 O 102.7 89.3 161.1 REMARK 620 5 LYS A 108 O 154.3 101.4 89.9 74.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PW3 B 1145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AMF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN SURFACE EPITOPE REMARK 900 ENGINEERED BRD1A IN COMPLEX WITH 3D CONSORTIUM FRAGMENT ETHYL 4,5,6, REMARK 900 7-TETRAHYDRO-1H-INDAZOLE-5- CARBOXYLATE (SGC - DIAMOND I04-1 REMARK 900 FRAGMENT SCREENING) REMARK 999 REMARK 999 SEQUENCE REMARK 999 EPITOPE ENGINEERED MUTATIONS P566E,V569R DBREF 5AME A 24 156 UNP O95696 BRD1_HUMAN 556 688 DBREF 5AME B 24 156 UNP O95696 BRD1_HUMAN 556 688 SEQADV 5AME SER A 22 UNP O95696 EXPRESSION TAG SEQADV 5AME MET A 23 UNP O95696 EXPRESSION TAG SEQADV 5AME GLU A 34 UNP O95696 PRO 566 ENGINEERED MUTATION SEQADV 5AME ARG A 37 UNP O95696 VAL 569 ENGINEERED MUTATION SEQADV 5AME SER B 22 UNP O95696 EXPRESSION TAG SEQADV 5AME MET B 23 UNP O95696 EXPRESSION TAG SEQADV 5AME GLU B 34 UNP O95696 PRO 566 ENGINEERED MUTATION SEQADV 5AME ARG B 37 UNP O95696 VAL 569 ENGINEERED MUTATION SEQRES 1 A 135 SER MET GLU GLN VAL ALA MET GLU LEU ARG LEU THR GLU SEQRES 2 A 135 LEU THR ARG LEU LEU ARG SER VAL LEU ASP GLN LEU GLN SEQRES 3 A 135 ASP LYS ASP PRO ALA ARG ILE PHE ALA GLN PRO VAL SER SEQRES 4 A 135 LEU LYS GLU VAL PRO ASP TYR LEU ASP HIS ILE LYS HIS SEQRES 5 A 135 PRO MET ASP PHE ALA THR MET ARG LYS ARG LEU GLU ALA SEQRES 6 A 135 GLN GLY TYR LYS ASN LEU HIS GLU PHE GLU GLU ASP PHE SEQRES 7 A 135 ASP LEU ILE ILE ASP ASN CYS MET LYS TYR ASN ALA ARG SEQRES 8 A 135 ASP THR VAL PHE TYR ARG ALA ALA VAL ARG LEU ARG ASP SEQRES 9 A 135 GLN GLY GLY VAL VAL LEU ARG GLN ALA ARG ARG GLU VAL SEQRES 10 A 135 ASP SER ILE GLY LEU GLU GLU ALA SER GLY MET HIS LEU SEQRES 11 A 135 PRO GLU ARG PRO ALA SEQRES 1 B 135 SER MET GLU GLN VAL ALA MET GLU LEU ARG LEU THR GLU SEQRES 2 B 135 LEU THR ARG LEU LEU ARG SER VAL LEU ASP GLN LEU GLN SEQRES 3 B 135 ASP LYS ASP PRO ALA ARG ILE PHE ALA GLN PRO VAL SER SEQRES 4 B 135 LEU LYS GLU VAL PRO ASP TYR LEU ASP HIS ILE LYS HIS SEQRES 5 B 135 PRO MET ASP PHE ALA THR MET ARG LYS ARG LEU GLU ALA SEQRES 6 B 135 GLN GLY TYR LYS ASN LEU HIS GLU PHE GLU GLU ASP PHE SEQRES 7 B 135 ASP LEU ILE ILE ASP ASN CYS MET LYS TYR ASN ALA ARG SEQRES 8 B 135 ASP THR VAL PHE TYR ARG ALA ALA VAL ARG LEU ARG ASP SEQRES 9 B 135 GLN GLY GLY VAL VAL LEU ARG GLN ALA ARG ARG GLU VAL SEQRES 10 B 135 ASP SER ILE GLY LEU GLU GLU ALA SER GLY MET HIS LEU SEQRES 11 B 135 PRO GLU ARG PRO ALA HET PW3 B1145 10 HET NA B1146 1 HETNAM PW3 4-ACETYL-PIPERAZIN-2-ONE HETNAM NA SODIUM ION FORMUL 3 PW3 C6 H10 N2 O2 FORMUL 4 NA NA 1+ FORMUL 5 HOH *300(H2 O) HELIX 1 1 SER A 22 ASP A 48 1 27 HELIX 2 2 ASP A 66 ILE A 71 1 6 HELIX 3 3 ASP A 76 ALA A 86 1 11 HELIX 4 4 ASN A 91 ASN A 110 1 20 HELIX 5 5 THR A 114 GLY A 142 1 29 HELIX 6 6 SER B 22 ASP B 48 1 27 HELIX 7 7 ASP B 66 ILE B 71 1 6 HELIX 8 8 ASP B 76 ALA B 86 1 11 HELIX 9 9 ASN B 91 ASN B 110 1 20 HELIX 10 10 THR B 114 GLY B 142 1 29 LINK NA NA B1146 O ASN B 110 1555 1555 2.36 LINK NA NA B1146 O HOH A2109 1555 1555 2.34 LINK NA NA B1146 O MET B 107 1555 1555 2.30 LINK NA NA B1146 O HOH A2110 1555 1555 2.38 LINK NA NA B1146 O LYS A 108 1555 1555 2.36 SITE 1 AC1 3 ASN B 110 PHE B 116 HOH B2084 SITE 1 AC2 6 LYS A 108 HOH A2109 HOH A2110 MET B 107 SITE 2 AC2 6 ASN B 110 TYR B 117 CRYST1 55.554 56.537 101.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009840 0.00000