data_5AMF # _entry.id 5AMF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5AMF PDBE EBI-63287 WWPDB D_1290063287 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 5AME _pdbx_database_related.content_type unspecified _pdbx_database_related.details ;CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN SURFACE EPITOPE ENGINEERED BRD1A IN COMPLEX WITH 3D CONSORTIUM FRAGMENT 4-ACETYL-PIPERAZIN-2-ONE (SGC - DIAMOND I04- 1 FRAGMENT SCREENING) ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AMF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-03-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pearce, N.M.' 1 'Fairhead, M.' 2 'Strain-Damerell, C.' 3 'Talon, R.' 4 'Wright, N.' 5 'Ng, J.T.' 6 'Bradley, A.' 7 'Cox, O.' 8 'Bowkett, D.' 9 'Collins, P.' 10 'Brandao-Neto, J.' 11 'Douangamath, A.' 12 'Krojer, T.' 13 'Burgess-Brown, N.' 14 'Brennan, P.' 15 'Arrowsmith, C.H.' 16 'Edwards, E.' 17 'Bountra, C.' 18 'von Delft, F.' 19 # _citation.id primary _citation.title ;Crystal Structure of the Bromodomain of Human Surface Epitope Engineered Brd1A in Complex with 3D Consortium Fragment Ethyl 4,5,6,7-Tetrahydro-1H-Indazole-5-Carboxylate ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pearce, N.M.' 1 ? primary 'Fairhead, M.' 2 ? primary 'Strain-Damerell, C.' 3 ? primary 'Talon, R.' 4 ? primary 'Wright, N.' 5 ? primary 'Ng, J.T.' 6 ? primary 'Bradley, A.' 7 ? primary 'Cox, O.' 8 ? primary 'Bowkett, D.' 9 ? primary 'Collins, P.' 10 ? primary 'Brandao-Neto, J.' 11 ? primary 'Douangamath, A.' 12 ? primary 'Krojer, T.' 13 ? primary 'Burgess-Brown, N.' 14 ? primary 'Brennan, P.' 15 ? primary 'Arrowsmith, C.H.' 16 ? primary 'Edwards, E.' 17 ? primary 'Bountra, C.' 18 ? primary 'von Delft, F.' 19 ? # _cell.entry_id 5AMF _cell.length_a 55.550 _cell.length_b 56.330 _cell.length_c 101.690 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AMF _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BROMODOMAIN-CONTAINING PROTEIN 1' 15753.008 2 ? YES 'BROMODOMAIN AND PHD FINGER, RESIDUES 556-688' 'SURFACE EPITOPE ENGINEERED P566E, V569R' 2 non-polymer syn 'ETHYL (5R)-4,5,6,7-TETRAHYDRO-1H-INDAZOLE-5-CARBOXYLATE' 194.230 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 239 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BR140-LIKE PROTEIN, BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 2, BRD1A, BR140-LIKE PROTEIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMEQVAMELRLTELTRLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDL IIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHLPERPA ; _entity_poly.pdbx_seq_one_letter_code_can ;SMEQVAMELRLTELTRLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDL IIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHLPERPA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLU n 1 4 GLN n 1 5 VAL n 1 6 ALA n 1 7 MET n 1 8 GLU n 1 9 LEU n 1 10 ARG n 1 11 LEU n 1 12 THR n 1 13 GLU n 1 14 LEU n 1 15 THR n 1 16 ARG n 1 17 LEU n 1 18 LEU n 1 19 ARG n 1 20 SER n 1 21 VAL n 1 22 LEU n 1 23 ASP n 1 24 GLN n 1 25 LEU n 1 26 GLN n 1 27 ASP n 1 28 LYS n 1 29 ASP n 1 30 PRO n 1 31 ALA n 1 32 ARG n 1 33 ILE n 1 34 PHE n 1 35 ALA n 1 36 GLN n 1 37 PRO n 1 38 VAL n 1 39 SER n 1 40 LEU n 1 41 LYS n 1 42 GLU n 1 43 VAL n 1 44 PRO n 1 45 ASP n 1 46 TYR n 1 47 LEU n 1 48 ASP n 1 49 HIS n 1 50 ILE n 1 51 LYS n 1 52 HIS n 1 53 PRO n 1 54 MET n 1 55 ASP n 1 56 PHE n 1 57 ALA n 1 58 THR n 1 59 MET n 1 60 ARG n 1 61 LYS n 1 62 ARG n 1 63 LEU n 1 64 GLU n 1 65 ALA n 1 66 GLN n 1 67 GLY n 1 68 TYR n 1 69 LYS n 1 70 ASN n 1 71 LEU n 1 72 HIS n 1 73 GLU n 1 74 PHE n 1 75 GLU n 1 76 GLU n 1 77 ASP n 1 78 PHE n 1 79 ASP n 1 80 LEU n 1 81 ILE n 1 82 ILE n 1 83 ASP n 1 84 ASN n 1 85 CYS n 1 86 MET n 1 87 LYS n 1 88 TYR n 1 89 ASN n 1 90 ALA n 1 91 ARG n 1 92 ASP n 1 93 THR n 1 94 VAL n 1 95 PHE n 1 96 TYR n 1 97 ARG n 1 98 ALA n 1 99 ALA n 1 100 VAL n 1 101 ARG n 1 102 LEU n 1 103 ARG n 1 104 ASP n 1 105 GLN n 1 106 GLY n 1 107 GLY n 1 108 VAL n 1 109 VAL n 1 110 LEU n 1 111 ARG n 1 112 GLN n 1 113 ALA n 1 114 ARG n 1 115 ARG n 1 116 GLU n 1 117 VAL n 1 118 ASP n 1 119 SER n 1 120 ILE n 1 121 GLY n 1 122 LEU n 1 123 GLU n 1 124 GLU n 1 125 ALA n 1 126 SER n 1 127 GLY n 1 128 MET n 1 129 HIS n 1 130 LEU n 1 131 PRO n 1 132 GLU n 1 133 ARG n 1 134 PRO n 1 135 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant R3-PRARE2 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNIC28-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O95696 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5AMF A 3 ? 135 ? O95696 556 ? 688 ? 24 156 2 1 5AMF B 3 ? 135 ? O95696 556 ? 688 ? 24 156 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5AMF SER A 1 ? UNP O95696 ? ? 'expression tag' 22 1 1 5AMF MET A 2 ? UNP O95696 ? ? 'expression tag' 23 2 1 5AMF GLU A 13 ? UNP O95696 PRO 566 'engineered mutation' 34 3 1 5AMF ARG A 16 ? UNP O95696 VAL 569 'engineered mutation' 37 4 2 5AMF SER B 1 ? UNP O95696 ? ? 'expression tag' 22 5 2 5AMF MET B 2 ? UNP O95696 ? ? 'expression tag' 23 6 2 5AMF GLU B 13 ? UNP O95696 PRO 566 'engineered mutation' 34 7 2 5AMF ARG B 16 ? UNP O95696 VAL 569 'engineered mutation' 37 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TWL non-polymer . 'ETHYL (5R)-4,5,6,7-TETRAHYDRO-1H-INDAZOLE-5-CARBOXYLATE' ? 'C10 H14 N2 O2' 194.230 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5AMF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_percent_sol 52.02 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M BIS-TRIS PH 7.0 , 30% PEG3350, 293 K, 12 HOURS' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS' _diffrn_detector.pdbx_collection_date 2014-08-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9200 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength 0.9200 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AMF _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 49.28 _reflns.d_resolution_high 1.75 _reflns.number_obs 32740 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.90 _reflns.B_iso_Wilson_estimate 24.41 _reflns.pdbx_redundancy 6.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.80 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.70 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 6.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AMF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 32684 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.275 _refine.ls_d_res_high 1.750 _refine.ls_percent_reflns_obs 99.24 _refine.ls_R_factor_obs 0.1774 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1755 _refine.ls_R_factor_R_free 0.2126 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1616 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.77 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'IN-HOUSE MODEL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.pdbx_overall_phase_error 20.26 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1953 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 239 _refine_hist.number_atoms_total 2207 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 49.275 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.019 ? ? 2095 'X-RAY DIFFRACTION' ? f_angle_d 1.655 ? ? 2843 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.275 ? ? 828 'X-RAY DIFFRACTION' ? f_chiral_restr 0.088 ? ? 313 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 383 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.7500 1.8015 2559 0.2474 100.00 0.2733 . . 132 . . 'X-RAY DIFFRACTION' . 1.8015 1.8597 2550 0.2306 99.00 0.3228 . . 140 . . 'X-RAY DIFFRACTION' . 1.8597 1.9261 2557 0.2239 100.00 0.2402 . . 140 . . 'X-RAY DIFFRACTION' . 1.9261 2.0032 2565 0.2027 100.00 0.2718 . . 138 . . 'X-RAY DIFFRACTION' . 2.0032 2.0944 2578 0.1876 100.00 0.2246 . . 132 . . 'X-RAY DIFFRACTION' . 2.0944 2.2048 2583 0.1750 100.00 0.1822 . . 123 . . 'X-RAY DIFFRACTION' . 2.2048 2.3430 2546 0.1710 97.00 0.2047 . . 97 . . 'X-RAY DIFFRACTION' . 2.3430 2.5239 2576 0.1765 100.00 0.1982 . . 139 . . 'X-RAY DIFFRACTION' . 2.5239 2.7778 2570 0.1840 100.00 0.2401 . . 172 . . 'X-RAY DIFFRACTION' . 2.7778 3.1797 2606 0.1743 99.00 0.2079 . . 125 . . 'X-RAY DIFFRACTION' . 3.1797 4.0059 2658 0.1628 100.00 0.2360 . . 135 . . 'X-RAY DIFFRACTION' . 4.0059 49.2946 2720 0.1574 98.00 0.1634 . . 143 . . # _struct.entry_id 5AMF _struct.title ;Crystal structure of the bromodomain of human surface epitope engineered BRD1A in complex with 3D Consortium fragment Ethyl 4,5,6,7- tetrahydro-1H-indazole-5-carboxylate (SGC - Diamond I04-1 fragment screening) ; _struct.pdbx_descriptor 'BROMODOMAIN-CONTAINING PROTEIN 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AMF _struct_keywords.pdbx_keywords 'HISTONE-BINDING PROTEIN' _struct_keywords.text 'HISTONE-BINDING PROTEIN, BROMODOMAIN, EPIGENETIC, FRAGMENTSCREENING, STRUCTURAL GENOMICS CONSORTIUM, SGC, DIAMOND I04-1' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? LYS A 28 ? SER A 22 LYS A 49 1 ? 28 HELX_P HELX_P2 2 ASP A 45 ? ILE A 50 ? ASP A 66 ILE A 71 1 ? 6 HELX_P HELX_P3 3 ASP A 55 ? ALA A 65 ? ASP A 76 ALA A 86 1 ? 11 HELX_P HELX_P4 4 ASN A 70 ? ASN A 89 ? ASN A 91 ASN A 110 1 ? 20 HELX_P HELX_P5 5 THR A 93 ? GLY A 121 ? THR A 114 GLY A 142 1 ? 29 HELX_P HELX_P6 6 SER B 1 ? LYS B 28 ? SER B 22 LYS B 49 1 ? 28 HELX_P HELX_P7 7 ASP B 45 ? ILE B 50 ? ASP B 66 ILE B 71 1 ? 6 HELX_P HELX_P8 8 ASP B 55 ? ALA B 65 ? ASP B 76 ALA B 86 1 ? 11 HELX_P HELX_P9 9 ASN B 70 ? ASN B 89 ? ASN B 91 ASN B 110 1 ? 20 HELX_P HELX_P10 10 THR B 93 ? GLY B 121 ? THR B 114 GLY B 142 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? B NA 1145 A HOH 2089 1_555 ? ? ? ? ? ? ? 2.401 ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 B MET 86 O ? ? B NA 1145 B MET 107 1_555 ? ? ? ? ? ? ? 2.318 ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 B ASN 89 O ? ? B NA 1145 B ASN 110 1_555 ? ? ? ? ? ? ? 2.335 ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? B NA 1145 A HOH 2090 1_555 ? ? ? ? ? ? ? 2.418 ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 A LYS 87 O ? ? B NA 1145 A LYS 108 1_555 ? ? ? ? ? ? ? 2.381 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE TWL A 1143' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA B 1145' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ILE A 33 ? ILE A 54 . ? 1_555 ? 2 AC1 9 VAL A 38 ? VAL A 59 . ? 1_555 ? 3 AC1 9 TYR A 46 ? TYR A 67 . ? 1_555 ? 4 AC1 9 CYS A 85 ? CYS A 106 . ? 1_555 ? 5 AC1 9 TYR A 88 ? TYR A 109 . ? 1_555 ? 6 AC1 9 ASN A 89 ? ASN A 110 . ? 1_555 ? 7 AC1 9 PHE A 95 ? PHE A 116 . ? 1_555 ? 8 AC1 9 HOH E . ? HOH A 2083 . ? 1_555 ? 9 AC1 9 MET B 2 ? MET B 23 . ? 2_454 ? 10 AC2 6 LYS A 87 ? LYS A 108 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH A 2089 . ? 1_555 ? 12 AC2 6 HOH E . ? HOH A 2090 . ? 1_555 ? 13 AC2 6 MET B 86 ? MET B 107 . ? 1_555 ? 14 AC2 6 ASN B 89 ? ASN B 110 . ? 1_555 ? 15 AC2 6 TYR B 96 ? TYR B 117 . ? 1_555 ? # _database_PDB_matrix.entry_id 5AMF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5AMF _atom_sites.fract_transf_matrix[1][1] 0.018002 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009834 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 22 22 SER SER A . n A 1 2 MET 2 23 23 MET MET A . n A 1 3 GLU 3 24 24 GLU GLU A . n A 1 4 GLN 4 25 25 GLN GLN A . n A 1 5 VAL 5 26 26 VAL VAL A . n A 1 6 ALA 6 27 27 ALA ALA A . n A 1 7 MET 7 28 28 MET MET A . n A 1 8 GLU 8 29 29 GLU GLU A . n A 1 9 LEU 9 30 30 LEU LEU A . n A 1 10 ARG 10 31 31 ARG ARG A . n A 1 11 LEU 11 32 32 LEU LEU A . n A 1 12 THR 12 33 33 THR THR A . n A 1 13 GLU 13 34 34 GLU GLU A . n A 1 14 LEU 14 35 35 LEU LEU A . n A 1 15 THR 15 36 36 THR THR A . n A 1 16 ARG 16 37 37 ARG ARG A . n A 1 17 LEU 17 38 38 LEU LEU A . n A 1 18 LEU 18 39 39 LEU LEU A . n A 1 19 ARG 19 40 40 ARG ARG A . n A 1 20 SER 20 41 41 SER SER A . n A 1 21 VAL 21 42 42 VAL VAL A . n A 1 22 LEU 22 43 43 LEU LEU A . n A 1 23 ASP 23 44 44 ASP ASP A . n A 1 24 GLN 24 45 45 GLN GLN A . n A 1 25 LEU 25 46 46 LEU LEU A . n A 1 26 GLN 26 47 47 GLN GLN A . n A 1 27 ASP 27 48 48 ASP ASP A . n A 1 28 LYS 28 49 49 LYS LYS A . n A 1 29 ASP 29 50 50 ASP ASP A . n A 1 30 PRO 30 51 51 PRO PRO A . n A 1 31 ALA 31 52 52 ALA ALA A . n A 1 32 ARG 32 53 53 ARG ARG A . n A 1 33 ILE 33 54 54 ILE ILE A . n A 1 34 PHE 34 55 55 PHE PHE A . n A 1 35 ALA 35 56 56 ALA ALA A . n A 1 36 GLN 36 57 57 GLN GLN A . n A 1 37 PRO 37 58 58 PRO PRO A . n A 1 38 VAL 38 59 59 VAL VAL A . n A 1 39 SER 39 60 60 SER SER A . n A 1 40 LEU 40 61 61 LEU LEU A . n A 1 41 LYS 41 62 62 LYS LYS A . n A 1 42 GLU 42 63 63 GLU GLU A . n A 1 43 VAL 43 64 64 VAL VAL A . n A 1 44 PRO 44 65 65 PRO PRO A . n A 1 45 ASP 45 66 66 ASP ASP A . n A 1 46 TYR 46 67 67 TYR TYR A . n A 1 47 LEU 47 68 68 LEU LEU A . n A 1 48 ASP 48 69 69 ASP ASP A . n A 1 49 HIS 49 70 70 HIS HIS A . n A 1 50 ILE 50 71 71 ILE ILE A . n A 1 51 LYS 51 72 72 LYS LYS A . n A 1 52 HIS 52 73 73 HIS HIS A . n A 1 53 PRO 53 74 74 PRO PRO A . n A 1 54 MET 54 75 75 MET MET A . n A 1 55 ASP 55 76 76 ASP ASP A . n A 1 56 PHE 56 77 77 PHE PHE A . n A 1 57 ALA 57 78 78 ALA ALA A . n A 1 58 THR 58 79 79 THR THR A . n A 1 59 MET 59 80 80 MET MET A . n A 1 60 ARG 60 81 81 ARG ARG A . n A 1 61 LYS 61 82 82 LYS LYS A . n A 1 62 ARG 62 83 83 ARG ARG A . n A 1 63 LEU 63 84 84 LEU LEU A . n A 1 64 GLU 64 85 85 GLU GLU A . n A 1 65 ALA 65 86 86 ALA ALA A . n A 1 66 GLN 66 87 87 GLN GLN A . n A 1 67 GLY 67 88 88 GLY GLY A . n A 1 68 TYR 68 89 89 TYR TYR A . n A 1 69 LYS 69 90 90 LYS LYS A . n A 1 70 ASN 70 91 91 ASN ASN A . n A 1 71 LEU 71 92 92 LEU LEU A . n A 1 72 HIS 72 93 93 HIS HIS A . n A 1 73 GLU 73 94 94 GLU GLU A . n A 1 74 PHE 74 95 95 PHE PHE A . n A 1 75 GLU 75 96 96 GLU GLU A . n A 1 76 GLU 76 97 97 GLU GLU A . n A 1 77 ASP 77 98 98 ASP ASP A . n A 1 78 PHE 78 99 99 PHE PHE A . n A 1 79 ASP 79 100 100 ASP ASP A . n A 1 80 LEU 80 101 101 LEU LEU A . n A 1 81 ILE 81 102 102 ILE ILE A . n A 1 82 ILE 82 103 103 ILE ILE A . n A 1 83 ASP 83 104 104 ASP ASP A . n A 1 84 ASN 84 105 105 ASN ASN A . n A 1 85 CYS 85 106 106 CYS CYS A . n A 1 86 MET 86 107 107 MET MET A . n A 1 87 LYS 87 108 108 LYS LYS A . n A 1 88 TYR 88 109 109 TYR TYR A . n A 1 89 ASN 89 110 110 ASN ASN A . n A 1 90 ALA 90 111 111 ALA ALA A . n A 1 91 ARG 91 112 112 ARG ARG A . n A 1 92 ASP 92 113 113 ASP ASP A . n A 1 93 THR 93 114 114 THR THR A . n A 1 94 VAL 94 115 115 VAL VAL A . n A 1 95 PHE 95 116 116 PHE PHE A . n A 1 96 TYR 96 117 117 TYR TYR A . n A 1 97 ARG 97 118 118 ARG ARG A . n A 1 98 ALA 98 119 119 ALA ALA A . n A 1 99 ALA 99 120 120 ALA ALA A . n A 1 100 VAL 100 121 121 VAL VAL A . n A 1 101 ARG 101 122 122 ARG ARG A . n A 1 102 LEU 102 123 123 LEU LEU A . n A 1 103 ARG 103 124 124 ARG ARG A . n A 1 104 ASP 104 125 125 ASP ASP A . n A 1 105 GLN 105 126 126 GLN GLN A . n A 1 106 GLY 106 127 127 GLY GLY A . n A 1 107 GLY 107 128 128 GLY GLY A . n A 1 108 VAL 108 129 129 VAL VAL A . n A 1 109 VAL 109 130 130 VAL VAL A . n A 1 110 LEU 110 131 131 LEU LEU A . n A 1 111 ARG 111 132 132 ARG ARG A . n A 1 112 GLN 112 133 133 GLN GLN A . n A 1 113 ALA 113 134 134 ALA ALA A . n A 1 114 ARG 114 135 135 ARG ARG A . n A 1 115 ARG 115 136 136 ARG ARG A . n A 1 116 GLU 116 137 137 GLU GLU A . n A 1 117 VAL 117 138 138 VAL VAL A . n A 1 118 ASP 118 139 139 ASP ASP A . n A 1 119 SER 119 140 140 SER SER A . n A 1 120 ILE 120 141 141 ILE ILE A . n A 1 121 GLY 121 142 142 GLY GLY A . n A 1 122 LEU 122 143 ? ? ? A . n A 1 123 GLU 123 144 ? ? ? A . n A 1 124 GLU 124 145 ? ? ? A . n A 1 125 ALA 125 146 ? ? ? A . n A 1 126 SER 126 147 ? ? ? A . n A 1 127 GLY 127 148 ? ? ? A . n A 1 128 MET 128 149 ? ? ? A . n A 1 129 HIS 129 150 ? ? ? A . n A 1 130 LEU 130 151 ? ? ? A . n A 1 131 PRO 131 152 ? ? ? A . n A 1 132 GLU 132 153 ? ? ? A . n A 1 133 ARG 133 154 ? ? ? A . n A 1 134 PRO 134 155 ? ? ? A . n A 1 135 ALA 135 156 ? ? ? A . n B 1 1 SER 1 22 22 SER SER B . n B 1 2 MET 2 23 23 MET MET B . n B 1 3 GLU 3 24 24 GLU GLU B . n B 1 4 GLN 4 25 25 GLN GLN B . n B 1 5 VAL 5 26 26 VAL VAL B . n B 1 6 ALA 6 27 27 ALA ALA B . n B 1 7 MET 7 28 28 MET MET B . n B 1 8 GLU 8 29 29 GLU GLU B . n B 1 9 LEU 9 30 30 LEU LEU B . n B 1 10 ARG 10 31 31 ARG ARG B . n B 1 11 LEU 11 32 32 LEU LEU B . n B 1 12 THR 12 33 33 THR THR B . n B 1 13 GLU 13 34 34 GLU GLU B . n B 1 14 LEU 14 35 35 LEU LEU B . n B 1 15 THR 15 36 36 THR THR B . n B 1 16 ARG 16 37 37 ARG ARG B . n B 1 17 LEU 17 38 38 LEU LEU B . n B 1 18 LEU 18 39 39 LEU LEU B . n B 1 19 ARG 19 40 40 ARG ARG B . n B 1 20 SER 20 41 41 SER SER B . n B 1 21 VAL 21 42 42 VAL VAL B . n B 1 22 LEU 22 43 43 LEU LEU B . n B 1 23 ASP 23 44 44 ASP ASP B . n B 1 24 GLN 24 45 45 GLN GLN B . n B 1 25 LEU 25 46 46 LEU LEU B . n B 1 26 GLN 26 47 47 GLN GLN B . n B 1 27 ASP 27 48 48 ASP ASP B . n B 1 28 LYS 28 49 49 LYS LYS B . n B 1 29 ASP 29 50 50 ASP ASP B . n B 1 30 PRO 30 51 51 PRO PRO B . n B 1 31 ALA 31 52 52 ALA ALA B . n B 1 32 ARG 32 53 53 ARG ARG B . n B 1 33 ILE 33 54 54 ILE ILE B . n B 1 34 PHE 34 55 55 PHE PHE B . n B 1 35 ALA 35 56 56 ALA ALA B . n B 1 36 GLN 36 57 57 GLN GLN B . n B 1 37 PRO 37 58 58 PRO PRO B . n B 1 38 VAL 38 59 59 VAL VAL B . n B 1 39 SER 39 60 60 SER SER B . n B 1 40 LEU 40 61 61 LEU LEU B . n B 1 41 LYS 41 62 62 LYS LYS B . n B 1 42 GLU 42 63 63 GLU GLU B . n B 1 43 VAL 43 64 64 VAL VAL B . n B 1 44 PRO 44 65 65 PRO PRO B . n B 1 45 ASP 45 66 66 ASP ASP B . n B 1 46 TYR 46 67 67 TYR TYR B . n B 1 47 LEU 47 68 68 LEU LEU B . n B 1 48 ASP 48 69 69 ASP ASP B . n B 1 49 HIS 49 70 70 HIS HIS B . n B 1 50 ILE 50 71 71 ILE ILE B . n B 1 51 LYS 51 72 72 LYS LYS B . n B 1 52 HIS 52 73 73 HIS HIS B . n B 1 53 PRO 53 74 74 PRO PRO B . n B 1 54 MET 54 75 75 MET MET B . n B 1 55 ASP 55 76 76 ASP ASP B . n B 1 56 PHE 56 77 77 PHE PHE B . n B 1 57 ALA 57 78 78 ALA ALA B . n B 1 58 THR 58 79 79 THR THR B . n B 1 59 MET 59 80 80 MET MET B . n B 1 60 ARG 60 81 81 ARG ARG B . n B 1 61 LYS 61 82 82 LYS LYS B . n B 1 62 ARG 62 83 83 ARG ARG B . n B 1 63 LEU 63 84 84 LEU LEU B . n B 1 64 GLU 64 85 85 GLU GLU B . n B 1 65 ALA 65 86 86 ALA ALA B . n B 1 66 GLN 66 87 87 GLN GLN B . n B 1 67 GLY 67 88 88 GLY GLY B . n B 1 68 TYR 68 89 89 TYR TYR B . n B 1 69 LYS 69 90 90 LYS LYS B . n B 1 70 ASN 70 91 91 ASN ASN B . n B 1 71 LEU 71 92 92 LEU LEU B . n B 1 72 HIS 72 93 93 HIS HIS B . n B 1 73 GLU 73 94 94 GLU GLU B . n B 1 74 PHE 74 95 95 PHE PHE B . n B 1 75 GLU 75 96 96 GLU GLU B . n B 1 76 GLU 76 97 97 GLU GLU B . n B 1 77 ASP 77 98 98 ASP ASP B . n B 1 78 PHE 78 99 99 PHE PHE B . n B 1 79 ASP 79 100 100 ASP ASP B . n B 1 80 LEU 80 101 101 LEU LEU B . n B 1 81 ILE 81 102 102 ILE ILE B . n B 1 82 ILE 82 103 103 ILE ILE B . n B 1 83 ASP 83 104 104 ASP ASP B . n B 1 84 ASN 84 105 105 ASN ASN B . n B 1 85 CYS 85 106 106 CYS CYS B . n B 1 86 MET 86 107 107 MET MET B . n B 1 87 LYS 87 108 108 LYS LYS B . n B 1 88 TYR 88 109 109 TYR TYR B . n B 1 89 ASN 89 110 110 ASN ASN B . n B 1 90 ALA 90 111 111 ALA ALA B . n B 1 91 ARG 91 112 112 ARG ARG B . n B 1 92 ASP 92 113 113 ASP ASP B . n B 1 93 THR 93 114 114 THR THR B . n B 1 94 VAL 94 115 115 VAL VAL B . n B 1 95 PHE 95 116 116 PHE PHE B . n B 1 96 TYR 96 117 117 TYR TYR B . n B 1 97 ARG 97 118 118 ARG ARG B . n B 1 98 ALA 98 119 119 ALA ALA B . n B 1 99 ALA 99 120 120 ALA ALA B . n B 1 100 VAL 100 121 121 VAL VAL B . n B 1 101 ARG 101 122 122 ARG ARG B . n B 1 102 LEU 102 123 123 LEU LEU B . n B 1 103 ARG 103 124 124 ARG ARG B . n B 1 104 ASP 104 125 125 ASP ASP B . n B 1 105 GLN 105 126 126 GLN GLN B . n B 1 106 GLY 106 127 127 GLY GLY B . n B 1 107 GLY 107 128 128 GLY GLY B . n B 1 108 VAL 108 129 129 VAL VAL B . n B 1 109 VAL 109 130 130 VAL VAL B . n B 1 110 LEU 110 131 131 LEU LEU B . n B 1 111 ARG 111 132 132 ARG ARG B . n B 1 112 GLN 112 133 133 GLN GLN B . n B 1 113 ALA 113 134 134 ALA ALA B . n B 1 114 ARG 114 135 135 ARG ARG B . n B 1 115 ARG 115 136 136 ARG ARG B . n B 1 116 GLU 116 137 137 GLU GLU B . n B 1 117 VAL 117 138 138 VAL VAL B . n B 1 118 ASP 118 139 139 ASP ASP B . n B 1 119 SER 119 140 140 SER SER B . n B 1 120 ILE 120 141 141 ILE ILE B . n B 1 121 GLY 121 142 142 GLY GLY B . n B 1 122 LEU 122 143 143 LEU LEU B . n B 1 123 GLU 123 144 144 GLU GLU B . n B 1 124 GLU 124 145 ? ? ? B . n B 1 125 ALA 125 146 ? ? ? B . n B 1 126 SER 126 147 ? ? ? B . n B 1 127 GLY 127 148 ? ? ? B . n B 1 128 MET 128 149 ? ? ? B . n B 1 129 HIS 129 150 ? ? ? B . n B 1 130 LEU 130 151 ? ? ? B . n B 1 131 PRO 131 152 ? ? ? B . n B 1 132 GLU 132 153 ? ? ? B . n B 1 133 ARG 133 154 ? ? ? B . n B 1 134 PRO 134 155 ? ? ? B . n B 1 135 ALA 135 156 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TWL 1 1143 1143 TWL TWL A . D 3 NA 1 1145 1145 NA NA B . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . E 4 HOH 54 2054 2054 HOH HOH A . E 4 HOH 55 2055 2055 HOH HOH A . E 4 HOH 56 2056 2056 HOH HOH A . E 4 HOH 57 2057 2057 HOH HOH A . E 4 HOH 58 2058 2058 HOH HOH A . E 4 HOH 59 2059 2059 HOH HOH A . E 4 HOH 60 2060 2060 HOH HOH A . E 4 HOH 61 2061 2061 HOH HOH A . E 4 HOH 62 2062 2062 HOH HOH A . E 4 HOH 63 2063 2063 HOH HOH A . E 4 HOH 64 2064 2064 HOH HOH A . E 4 HOH 65 2065 2065 HOH HOH A . E 4 HOH 66 2066 2066 HOH HOH A . E 4 HOH 67 2067 2067 HOH HOH A . E 4 HOH 68 2068 2068 HOH HOH A . E 4 HOH 69 2069 2069 HOH HOH A . E 4 HOH 70 2070 2070 HOH HOH A . E 4 HOH 71 2071 2071 HOH HOH A . E 4 HOH 72 2072 2072 HOH HOH A . E 4 HOH 73 2073 2073 HOH HOH A . E 4 HOH 74 2074 2074 HOH HOH A . E 4 HOH 75 2075 2075 HOH HOH A . E 4 HOH 76 2076 2076 HOH HOH A . E 4 HOH 77 2077 2077 HOH HOH A . E 4 HOH 78 2078 2078 HOH HOH A . E 4 HOH 79 2079 2079 HOH HOH A . E 4 HOH 80 2080 2080 HOH HOH A . E 4 HOH 81 2081 2081 HOH HOH A . E 4 HOH 82 2082 2082 HOH HOH A . E 4 HOH 83 2083 2083 HOH HOH A . E 4 HOH 84 2084 2084 HOH HOH A . E 4 HOH 85 2085 2085 HOH HOH A . E 4 HOH 86 2086 2086 HOH HOH A . E 4 HOH 87 2087 2087 HOH HOH A . E 4 HOH 88 2088 2088 HOH HOH A . E 4 HOH 89 2089 2089 HOH HOH A . E 4 HOH 90 2090 2090 HOH HOH A . E 4 HOH 91 2091 2091 HOH HOH A . E 4 HOH 92 2092 2092 HOH HOH A . E 4 HOH 93 2093 2093 HOH HOH A . E 4 HOH 94 2094 2094 HOH HOH A . E 4 HOH 95 2095 2095 HOH HOH A . E 4 HOH 96 2096 2096 HOH HOH A . E 4 HOH 97 2097 2097 HOH HOH A . E 4 HOH 98 2098 2098 HOH HOH A . E 4 HOH 99 2099 2099 HOH HOH A . E 4 HOH 100 2100 2100 HOH HOH A . E 4 HOH 101 2101 2101 HOH HOH A . E 4 HOH 102 2102 2102 HOH HOH A . E 4 HOH 103 2103 2103 HOH HOH A . E 4 HOH 104 2104 2104 HOH HOH A . E 4 HOH 105 2105 2105 HOH HOH A . E 4 HOH 106 2106 2106 HOH HOH A . E 4 HOH 107 2107 2107 HOH HOH A . E 4 HOH 108 2108 2108 HOH HOH A . E 4 HOH 109 2109 2109 HOH HOH A . E 4 HOH 110 2110 2110 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH B . F 4 HOH 2 2002 2002 HOH HOH B . F 4 HOH 3 2003 2003 HOH HOH B . F 4 HOH 4 2004 2004 HOH HOH B . F 4 HOH 5 2005 2005 HOH HOH B . F 4 HOH 6 2006 2006 HOH HOH B . F 4 HOH 7 2007 2007 HOH HOH B . F 4 HOH 8 2008 2008 HOH HOH B . F 4 HOH 9 2009 2009 HOH HOH B . F 4 HOH 10 2010 2010 HOH HOH B . F 4 HOH 11 2011 2011 HOH HOH B . F 4 HOH 12 2012 2012 HOH HOH B . F 4 HOH 13 2013 2013 HOH HOH B . F 4 HOH 14 2014 2014 HOH HOH B . F 4 HOH 15 2015 2015 HOH HOH B . F 4 HOH 16 2016 2016 HOH HOH B . F 4 HOH 17 2017 2017 HOH HOH B . F 4 HOH 18 2018 2018 HOH HOH B . F 4 HOH 19 2019 2019 HOH HOH B . F 4 HOH 20 2020 2020 HOH HOH B . F 4 HOH 21 2021 2021 HOH HOH B . F 4 HOH 22 2022 2022 HOH HOH B . F 4 HOH 23 2023 2023 HOH HOH B . F 4 HOH 24 2024 2024 HOH HOH B . F 4 HOH 25 2025 2025 HOH HOH B . F 4 HOH 26 2026 2026 HOH HOH B . F 4 HOH 27 2027 2027 HOH HOH B . F 4 HOH 28 2028 2028 HOH HOH B . F 4 HOH 29 2029 2029 HOH HOH B . F 4 HOH 30 2030 2030 HOH HOH B . F 4 HOH 31 2031 2031 HOH HOH B . F 4 HOH 32 2032 2032 HOH HOH B . F 4 HOH 33 2033 2033 HOH HOH B . F 4 HOH 34 2034 2034 HOH HOH B . F 4 HOH 35 2035 2035 HOH HOH B . F 4 HOH 36 2036 2036 HOH HOH B . F 4 HOH 37 2037 2037 HOH HOH B . F 4 HOH 38 2038 2038 HOH HOH B . F 4 HOH 39 2039 2039 HOH HOH B . F 4 HOH 40 2040 2040 HOH HOH B . F 4 HOH 41 2041 2041 HOH HOH B . F 4 HOH 42 2042 2042 HOH HOH B . F 4 HOH 43 2043 2043 HOH HOH B . F 4 HOH 44 2044 2044 HOH HOH B . F 4 HOH 45 2045 2045 HOH HOH B . F 4 HOH 46 2046 2046 HOH HOH B . F 4 HOH 47 2047 2047 HOH HOH B . F 4 HOH 48 2048 2048 HOH HOH B . F 4 HOH 49 2049 2049 HOH HOH B . F 4 HOH 50 2050 2050 HOH HOH B . F 4 HOH 51 2051 2051 HOH HOH B . F 4 HOH 52 2052 2052 HOH HOH B . F 4 HOH 53 2053 2053 HOH HOH B . F 4 HOH 54 2054 2054 HOH HOH B . F 4 HOH 55 2055 2055 HOH HOH B . F 4 HOH 56 2056 2056 HOH HOH B . F 4 HOH 57 2057 2057 HOH HOH B . F 4 HOH 58 2058 2058 HOH HOH B . F 4 HOH 59 2059 2059 HOH HOH B . F 4 HOH 60 2060 2060 HOH HOH B . F 4 HOH 61 2061 2061 HOH HOH B . F 4 HOH 62 2062 2062 HOH HOH B . F 4 HOH 63 2063 2063 HOH HOH B . F 4 HOH 64 2064 2064 HOH HOH B . F 4 HOH 65 2065 2065 HOH HOH B . F 4 HOH 66 2066 2066 HOH HOH B . F 4 HOH 67 2067 2067 HOH HOH B . F 4 HOH 68 2068 2068 HOH HOH B . F 4 HOH 69 2069 2069 HOH HOH B . F 4 HOH 70 2070 2070 HOH HOH B . F 4 HOH 71 2071 2071 HOH HOH B . F 4 HOH 72 2072 2072 HOH HOH B . F 4 HOH 73 2073 2073 HOH HOH B . F 4 HOH 74 2074 2074 HOH HOH B . F 4 HOH 75 2075 2075 HOH HOH B . F 4 HOH 76 2076 2076 HOH HOH B . F 4 HOH 77 2077 2077 HOH HOH B . F 4 HOH 78 2078 2078 HOH HOH B . F 4 HOH 79 2079 2079 HOH HOH B . F 4 HOH 80 2080 2080 HOH HOH B . F 4 HOH 81 2081 2081 HOH HOH B . F 4 HOH 82 2082 2082 HOH HOH B . F 4 HOH 83 2083 2083 HOH HOH B . F 4 HOH 84 2084 2084 HOH HOH B . F 4 HOH 85 2085 2085 HOH HOH B . F 4 HOH 86 2086 2086 HOH HOH B . F 4 HOH 87 2087 2087 HOH HOH B . F 4 HOH 88 2088 2088 HOH HOH B . F 4 HOH 89 2089 2089 HOH HOH B . F 4 HOH 90 2090 2090 HOH HOH B . F 4 HOH 91 2091 2091 HOH HOH B . F 4 HOH 92 2092 2092 HOH HOH B . F 4 HOH 93 2093 2093 HOH HOH B . F 4 HOH 94 2094 2094 HOH HOH B . F 4 HOH 95 2095 2095 HOH HOH B . F 4 HOH 96 2096 2096 HOH HOH B . F 4 HOH 97 2097 2097 HOH HOH B . F 4 HOH 98 2098 2098 HOH HOH B . F 4 HOH 99 2099 2099 HOH HOH B . F 4 HOH 100 2100 2100 HOH HOH B . F 4 HOH 101 2101 2101 HOH HOH B . F 4 HOH 102 2102 2102 HOH HOH B . F 4 HOH 103 2103 2103 HOH HOH B . F 4 HOH 104 2104 2104 HOH HOH B . F 4 HOH 105 2105 2105 HOH HOH B . F 4 HOH 106 2106 2106 HOH HOH B . F 4 HOH 107 2107 2107 HOH HOH B . F 4 HOH 108 2108 2108 HOH HOH B . F 4 HOH 109 2109 2109 HOH HOH B . F 4 HOH 110 2110 2110 HOH HOH B . F 4 HOH 111 2111 2111 HOH HOH B . F 4 HOH 112 2112 2112 HOH HOH B . F 4 HOH 113 2113 2113 HOH HOH B . F 4 HOH 114 2114 2114 HOH HOH B . F 4 HOH 115 2115 2115 HOH HOH B . F 4 HOH 116 2116 2116 HOH HOH B . F 4 HOH 117 2117 2117 HOH HOH B . F 4 HOH 118 2118 2118 HOH HOH B . F 4 HOH 119 2119 2119 HOH HOH B . F 4 HOH 120 2120 2120 HOH HOH B . F 4 HOH 121 2121 2121 HOH HOH B . F 4 HOH 122 2122 2122 HOH HOH B . F 4 HOH 123 2123 2123 HOH HOH B . F 4 HOH 124 2124 2124 HOH HOH B . F 4 HOH 125 2125 2125 HOH HOH B . F 4 HOH 126 2126 2126 HOH HOH B . F 4 HOH 127 2127 2127 HOH HOH B . F 4 HOH 128 2128 2128 HOH HOH B . F 4 HOH 129 2129 2129 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 2089 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? B MET 86 ? B MET 107 ? 1_555 104.0 ? 2 O ? E HOH . ? A HOH 2089 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? B ASN 89 ? B ASN 110 ? 1_555 103.3 ? 3 O ? B MET 86 ? B MET 107 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? B ASN 89 ? B ASN 110 ? 1_555 87.5 ? 4 O ? E HOH . ? A HOH 2089 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? E HOH . ? A HOH 2090 ? 1_555 87.8 ? 5 O ? B MET 86 ? B MET 107 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? E HOH . ? A HOH 2090 ? 1_555 162.2 ? 6 O ? B ASN 89 ? B ASN 110 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? E HOH . ? A HOH 2090 ? 1_555 102.8 ? 7 O ? E HOH . ? A HOH 2089 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? A LYS 87 ? A LYS 108 ? 1_555 101.8 ? 8 O ? B MET 86 ? B MET 107 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? A LYS 87 ? A LYS 108 ? 1_555 89.8 ? 9 O ? B ASN 89 ? B ASN 110 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? A LYS 87 ? A LYS 108 ? 1_555 154.7 ? 10 O ? E HOH . ? A HOH 2090 ? 1_555 NA ? D NA . ? B NA 1145 ? 1_555 O ? A LYS 87 ? A LYS 108 ? 1_555 74.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-18 2 'Structure model' 1 1 2018-01-24 3 'Structure model' 1 2 2019-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation_author 2 3 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation_author.name' 2 3 'Structure model' '_exptl_crystal_grow.temp' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 7.3338 -2.4995 7.6836 0.1721 0.3263 0.3749 0.0542 -0.0505 0.0040 0.9233 1.3594 0.1625 0.4870 0.0376 0.3435 0.2008 0.1439 -0.0798 -0.0166 -0.1552 -0.7364 -0.0434 0.4397 0.0788 'X-RAY DIFFRACTION' 2 ? refined -3.2057 4.4207 9.5952 0.2176 0.2124 0.1750 -0.0053 -0.0035 0.0136 1.2300 0.4341 0.4837 -0.0352 -0.1798 0.0214 0.1352 -0.0471 -0.0659 0.1359 -0.0715 -0.1178 -0.0525 0.0973 0.0019 'X-RAY DIFFRACTION' 3 ? refined -12.1313 2.4875 -2.0721 0.2401 0.2027 0.2086 0.0092 0.0129 -0.0190 0.1154 0.0632 0.3019 0.1155 -0.1711 -0.1527 -0.0755 0.2117 -0.1705 -0.0941 0.0569 0.2837 0.0591 0.0439 0.0000 'X-RAY DIFFRACTION' 4 ? refined 2.0403 -15.1961 6.9317 0.4175 0.2953 0.5492 0.0704 -0.0722 0.0087 0.0433 0.0463 0.0365 0.0835 0.0701 -0.0450 0.0647 -0.0690 -0.1041 0.1176 -0.2690 -1.0692 0.7834 -0.1895 -0.0015 'X-RAY DIFFRACTION' 5 ? refined -26.9920 -3.5783 28.1000 0.1591 0.1907 0.2071 -0.0296 -0.0150 -0.0122 0.3238 0.2335 0.7727 -0.1216 -0.4635 0.1205 0.0018 -0.1101 -0.0229 0.0328 0.1153 0.0453 -0.0954 -0.2353 -0.0000 'X-RAY DIFFRACTION' 6 ? refined -23.6882 -4.2939 14.6191 0.2078 0.1881 0.1952 0.0201 -0.0136 0.0035 -0.0869 0.7637 0.9687 0.7145 -0.2385 -0.5094 0.0504 0.0534 -0.0200 -0.1373 0.0094 -0.0434 0.2593 0.1128 0.0001 'X-RAY DIFFRACTION' 7 ? refined -22.9230 9.9056 10.0539 0.1688 0.1751 0.1871 0.0186 -0.0102 0.0095 0.1025 0.3524 0.1309 0.1720 -0.1514 -0.2341 0.0547 0.0057 0.0617 -0.0775 0.0002 -0.0378 -0.0526 -0.0396 0.0001 'X-RAY DIFFRACTION' 8 ? refined -16.4129 2.2846 32.0131 0.2284 0.2296 0.2348 -0.0327 -0.0367 0.0189 0.0798 0.1254 0.0734 -0.0142 0.1013 -0.0012 -0.0684 0.0791 0.1155 0.2063 -0.0946 -0.3381 -0.0707 0.2965 -0.0005 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 22:60)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 61:107)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 108:127)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 128:144)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 22:60)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 61:107)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 108:127)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 128:144)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 Aimless 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 5AMF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;ETHYL 4,5,6,7-TETRAHYDRO-1H-INDAZOLE-5-CARBOXYLATE (LIG): 3D CONSORTIUM FRAGMENT, SGC NAMES N11075A, FMO3D000387A ; _pdbx_entry_details.sequence_details 'EPITOPE ENGINEERED MUTATIONS P566E,V569R' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 34 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2013 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 66 ? ? CG A ASP 66 ? ? OD1 A ASP 66 ? ? 125.02 118.30 6.72 0.90 N 2 1 CB B ASP 125 ? A CG B ASP 125 ? A OD1 B ASP 125 ? A 125.84 118.30 7.54 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 50 ? ? -119.80 64.93 2 1 ASP B 113 ? ? -93.49 57.06 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2012 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.87 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 24 ? CG ? A GLU 3 CG 2 1 Y 1 A GLU 24 ? CD ? A GLU 3 CD 3 1 Y 1 A GLU 24 ? OE1 ? A GLU 3 OE1 4 1 Y 1 A GLU 24 ? OE2 ? A GLU 3 OE2 5 1 Y 1 A MET 28 ? CE ? A MET 7 CE 6 1 Y 1 A LEU 30 ? CG ? A LEU 9 CG 7 1 Y 1 A LEU 30 ? CD1 ? A LEU 9 CD1 8 1 Y 1 A LEU 30 ? CD2 ? A LEU 9 CD2 9 1 Y 1 A ARG 31 ? CG ? A ARG 10 CG 10 1 Y 1 A ARG 31 ? CD ? A ARG 10 CD 11 1 Y 1 A ARG 31 ? NE ? A ARG 10 NE 12 1 Y 1 A ARG 31 ? CZ ? A ARG 10 CZ 13 1 Y 1 A ARG 31 ? NH1 ? A ARG 10 NH1 14 1 Y 1 A ARG 31 ? NH2 ? A ARG 10 NH2 15 1 Y 1 A ARG 37 ? CG ? A ARG 16 CG 16 1 Y 1 A ARG 37 ? CD ? A ARG 16 CD 17 1 Y 1 A ARG 37 ? NE ? A ARG 16 NE 18 1 Y 1 A ARG 37 ? CZ ? A ARG 16 CZ 19 1 Y 1 A ARG 37 ? NH1 ? A ARG 16 NH1 20 1 Y 1 A ARG 37 ? NH2 ? A ARG 16 NH2 21 1 Y 1 A LYS 62 ? CD ? A LYS 41 CD 22 1 Y 1 A LYS 62 ? CE ? A LYS 41 CE 23 1 Y 1 A LYS 62 ? NZ ? A LYS 41 NZ 24 1 Y 1 A LYS 82 ? CG ? A LYS 61 CG 25 1 Y 1 A LYS 82 ? CD ? A LYS 61 CD 26 1 Y 1 A LYS 82 ? CE ? A LYS 61 CE 27 1 Y 1 A LYS 82 ? NZ ? A LYS 61 NZ 28 1 Y 1 A LYS 90 ? CG ? A LYS 69 CG 29 1 Y 1 A LYS 90 ? CD ? A LYS 69 CD 30 1 Y 1 A LYS 90 ? CE ? A LYS 69 CE 31 1 Y 1 A LYS 90 ? NZ ? A LYS 69 NZ 32 1 Y 1 A ARG 132 ? CG ? A ARG 111 CG 33 1 Y 1 A ARG 132 ? CD ? A ARG 111 CD 34 1 Y 1 A ARG 132 ? NE ? A ARG 111 NE 35 1 Y 1 A ARG 132 ? CZ ? A ARG 111 CZ 36 1 Y 1 A ARG 132 ? NH1 ? A ARG 111 NH1 37 1 Y 1 A ARG 132 ? NH2 ? A ARG 111 NH2 38 1 Y 1 A ILE 141 ? CG1 ? A ILE 120 CG1 39 1 Y 1 A ILE 141 ? CG2 ? A ILE 120 CG2 40 1 Y 1 A ILE 141 ? CD1 ? A ILE 120 CD1 41 1 Y 1 B LYS 62 ? CG ? B LYS 41 CG 42 1 Y 1 B LYS 62 ? CD ? B LYS 41 CD 43 1 Y 1 B LYS 62 ? CE ? B LYS 41 CE 44 1 Y 1 B LYS 62 ? NZ ? B LYS 41 NZ 45 1 Y 1 B GLU 63 ? CG ? B GLU 42 CG 46 1 Y 1 B GLU 63 ? CD ? B GLU 42 CD 47 1 Y 1 B GLU 63 ? OE1 ? B GLU 42 OE1 48 1 Y 1 B GLU 63 ? OE2 ? B GLU 42 OE2 49 1 Y 1 B LYS 90 ? CG ? B LYS 69 CG 50 1 Y 1 B LYS 90 ? CD ? B LYS 69 CD 51 1 Y 1 B LYS 90 ? CE ? B LYS 69 CE 52 1 Y 1 B LYS 90 ? NZ ? B LYS 69 NZ 53 1 Y 1 B ARG 136 ? NE ? B ARG 115 NE 54 1 Y 1 B ARG 136 ? CZ ? B ARG 115 CZ 55 1 Y 1 B ARG 136 ? NH1 ? B ARG 115 NH1 56 1 Y 1 B ARG 136 ? NH2 ? B ARG 115 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 143 ? A LEU 122 2 1 Y 1 A GLU 144 ? A GLU 123 3 1 Y 1 A GLU 145 ? A GLU 124 4 1 Y 1 A ALA 146 ? A ALA 125 5 1 Y 1 A SER 147 ? A SER 126 6 1 Y 1 A GLY 148 ? A GLY 127 7 1 Y 1 A MET 149 ? A MET 128 8 1 Y 1 A HIS 150 ? A HIS 129 9 1 Y 1 A LEU 151 ? A LEU 130 10 1 Y 1 A PRO 152 ? A PRO 131 11 1 Y 1 A GLU 153 ? A GLU 132 12 1 Y 1 A ARG 154 ? A ARG 133 13 1 Y 1 A PRO 155 ? A PRO 134 14 1 Y 1 A ALA 156 ? A ALA 135 15 1 Y 1 B GLU 145 ? B GLU 124 16 1 Y 1 B ALA 146 ? B ALA 125 17 1 Y 1 B SER 147 ? B SER 126 18 1 Y 1 B GLY 148 ? B GLY 127 19 1 Y 1 B MET 149 ? B MET 128 20 1 Y 1 B HIS 150 ? B HIS 129 21 1 Y 1 B LEU 151 ? B LEU 130 22 1 Y 1 B PRO 152 ? B PRO 131 23 1 Y 1 B GLU 153 ? B GLU 132 24 1 Y 1 B ARG 154 ? B ARG 133 25 1 Y 1 B PRO 155 ? B PRO 134 26 1 Y 1 B ALA 156 ? B ALA 135 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ETHYL (5R)-4,5,6,7-TETRAHYDRO-1H-INDAZOLE-5-CARBOXYLATE' TWL 3 'SODIUM ION' NA 4 water HOH #