data_5AMH # _entry.id 5AMH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AMH pdb_00005amh 10.2210/pdb5amh/pdb PDBE EBI-63291 ? ? WWPDB D_1290063291 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-01 2 'Structure model' 1 1 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_database_status 5 2 'Structure model' pdbx_initial_refinement_model 6 2 'Structure model' pdbx_struct_conn_angle 7 2 'Structure model' struct_conn 8 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_sf' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 18 2 'Structure model' '_pdbx_struct_conn_angle.value' 19 2 'Structure model' '_struct_conn.pdbx_dist_value' 20 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 2 'Structure model' '_struct_conn.ptnr1_symmetry' 27 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 2 'Structure model' '_struct_conn.ptnr2_symmetry' 34 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AMH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-03-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5AMI unspecified 'CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX WITH THALIDOMIDE, WASH I STRUCTURE' PDB 5AMJ unspecified 'CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX WITH THALIDOMIDE, WASH II STRUCTURE' PDB 5AMK unspecified 'CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN MULTIPLE CONFORMATIONS, HEXAGONAL CRYSTAL FORM' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hartmann, M.D.' 1 'Lupas, A.N.' 2 'Hernandez Alvarez, B.' 3 # _citation.id primary _citation.title 'Structural Dynamics of the Cereblon Ligand Binding Domain.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 10 _citation.page_first 28342 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26024445 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PONE.0128342 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hartmann, M.D.' 1 ? primary 'Boichenko, I.' 2 ? primary 'Coles, M.' 3 ? primary 'Lupas, A.N.' 4 ? primary 'Hernandez Alvarez, B.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CEREBLON ISOFORM 4' 13703.577 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn S-Thalidomide 258.229 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 7 ? ? ? ? 6 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 7 water nat water 18.015 149 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AMPLDAGGQNSTQMVLAPGASIFRCRQCGQTISRRDWLLPMGGDHEHVVFNPAGMIFRVWCFSLAQGLRLIGAPSGEFSW FKGYDWTIALCGQCGSHLGWHYEGGSQPQTFFGLIKDRLAEGPAD ; _entity_poly.pdbx_seq_one_letter_code_can ;AMPLDAGGQNSTQMVLAPGASIFRCRQCGQTISRRDWLLPMGGDHEHVVFNPAGMIFRVWCFSLAQGLRLIGAPSGEFSW FKGYDWTIALCGQCGSHLGWHYEGGSQPQTFFGLIKDRLAEGPAD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 S-Thalidomide EF2 4 'CALCIUM ION' CA 5 'CHLORIDE ION' CL 6 'NICKEL (II) ION' NI 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 PRO n 1 4 LEU n 1 5 ASP n 1 6 ALA n 1 7 GLY n 1 8 GLY n 1 9 GLN n 1 10 ASN n 1 11 SER n 1 12 THR n 1 13 GLN n 1 14 MET n 1 15 VAL n 1 16 LEU n 1 17 ALA n 1 18 PRO n 1 19 GLY n 1 20 ALA n 1 21 SER n 1 22 ILE n 1 23 PHE n 1 24 ARG n 1 25 CYS n 1 26 ARG n 1 27 GLN n 1 28 CYS n 1 29 GLY n 1 30 GLN n 1 31 THR n 1 32 ILE n 1 33 SER n 1 34 ARG n 1 35 ARG n 1 36 ASP n 1 37 TRP n 1 38 LEU n 1 39 LEU n 1 40 PRO n 1 41 MET n 1 42 GLY n 1 43 GLY n 1 44 ASP n 1 45 HIS n 1 46 GLU n 1 47 HIS n 1 48 VAL n 1 49 VAL n 1 50 PHE n 1 51 ASN n 1 52 PRO n 1 53 ALA n 1 54 GLY n 1 55 MET n 1 56 ILE n 1 57 PHE n 1 58 ARG n 1 59 VAL n 1 60 TRP n 1 61 CYS n 1 62 PHE n 1 63 SER n 1 64 LEU n 1 65 ALA n 1 66 GLN n 1 67 GLY n 1 68 LEU n 1 69 ARG n 1 70 LEU n 1 71 ILE n 1 72 GLY n 1 73 ALA n 1 74 PRO n 1 75 SER n 1 76 GLY n 1 77 GLU n 1 78 PHE n 1 79 SER n 1 80 TRP n 1 81 PHE n 1 82 LYS n 1 83 GLY n 1 84 TYR n 1 85 ASP n 1 86 TRP n 1 87 THR n 1 88 ILE n 1 89 ALA n 1 90 LEU n 1 91 CYS n 1 92 GLY n 1 93 GLN n 1 94 CYS n 1 95 GLY n 1 96 SER n 1 97 HIS n 1 98 LEU n 1 99 GLY n 1 100 TRP n 1 101 HIS n 1 102 TYR n 1 103 GLU n 1 104 GLY n 1 105 GLY n 1 106 SER n 1 107 GLN n 1 108 PRO n 1 109 GLN n 1 110 THR n 1 111 PHE n 1 112 PHE n 1 113 GLY n 1 114 LEU n 1 115 ILE n 1 116 LYS n 1 117 ASP n 1 118 ARG n 1 119 LEU n 1 120 ALA n 1 121 GLU n 1 122 GLY n 1 123 PRO n 1 124 ALA n 1 125 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MSR-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MAGNETOSPIRILLUM GRYPHISWALDENSE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 431944 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EF2 non-polymer . S-Thalidomide ? 'C13 H10 N2 O4' 258.229 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 PRO 3 2 ? ? ? A . n A 1 4 LEU 4 3 ? ? ? A . n A 1 5 ASP 5 4 ? ? ? A . n A 1 6 ALA 6 5 ? ? ? A . n A 1 7 GLY 7 6 ? ? ? A . n A 1 8 GLY 8 7 ? ? ? A . n A 1 9 GLN 9 8 ? ? ? A . n A 1 10 ASN 10 9 ? ? ? A . n A 1 11 SER 11 10 ? ? ? A . n A 1 12 THR 12 11 ? ? ? A . n A 1 13 GLN 13 12 ? ? ? A . n A 1 14 MET 14 13 ? ? ? A . n A 1 15 VAL 15 14 ? ? ? A . n A 1 16 LEU 16 15 ? ? ? A . n A 1 17 ALA 17 16 ? ? ? A . n A 1 18 PRO 18 17 ? ? ? A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 CYS 25 24 24 CYS CYS A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 GLN 27 26 26 GLN GLN A . n A 1 28 CYS 28 27 27 CYS CYS A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 THR 31 30 30 THR THR A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 TRP 37 36 36 TRP TRP A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 MET 41 40 40 MET MET A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 HIS 45 44 44 HIS HIS A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 HIS 47 46 46 HIS HIS A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 PHE 50 49 49 PHE PHE A . n A 1 51 ASN 51 50 50 ASN ASN A . n A 1 52 PRO 52 51 51 PRO PRO A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 MET 55 54 54 MET MET A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 TRP 60 59 59 TRP TRP A . n A 1 61 CYS 61 60 60 CYS CYS A . n A 1 62 PHE 62 61 61 PHE PHE A . n A 1 63 SER 63 62 62 SER SER A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 GLY 67 66 66 GLY GLY A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ILE 71 70 70 ILE ILE A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 PRO 74 73 73 PRO PRO A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 PHE 78 77 77 PHE PHE A . n A 1 79 SER 79 78 78 SER SER A . n A 1 80 TRP 80 79 79 TRP TRP A . n A 1 81 PHE 81 80 80 PHE PHE A . n A 1 82 LYS 82 81 81 LYS LYS A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 TYR 84 83 83 TYR TYR A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 TRP 86 85 85 TRP TRP A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 ILE 88 87 87 ILE ILE A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 CYS 91 90 90 CYS CYS A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 GLN 93 92 92 GLN GLN A . n A 1 94 CYS 94 93 93 CYS CYS A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 SER 96 95 95 SER SER A . n A 1 97 HIS 97 96 96 HIS HIS A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 TRP 100 99 99 TRP TRP A . n A 1 101 HIS 101 100 100 HIS HIS A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 GLY 104 103 103 GLY GLY A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 SER 106 105 105 SER SER A . n A 1 107 GLN 107 106 106 GLN GLN A . n A 1 108 PRO 108 107 107 PRO PRO A . n A 1 109 GLN 109 108 108 GLN GLN A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 PHE 112 111 111 PHE PHE A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 ARG 118 117 117 ARG ARG A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 ALA 120 119 119 ALA ALA A . n A 1 121 GLU 121 120 120 GLU GLU A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 PRO 123 122 122 PRO PRO A . n A 1 124 ALA 124 123 123 ALA ALA A . n A 1 125 ASP 125 124 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 150 150 ZN ZN A . C 3 EF2 1 151 151 EF2 EF2 A . D 4 CA 1 1126 1126 CA CA A . E 5 CL 1 1127 1127 CL CL A . F 5 CL 1 1128 1128 CL CL A . G 5 CL 1 1129 1129 CL CL A . H 5 CL 1 1130 1130 CL CL A . I 5 CL 1 1131 1131 CL CL A . J 5 CL 1 1132 1132 CL CL A . K 5 CL 1 1133 1133 CL CL A . L 6 NI 1 1134 1134 NI NI A . M 7 HOH 1 2001 2001 HOH HOH A . M 7 HOH 2 2002 2002 HOH HOH A . M 7 HOH 3 2003 2003 HOH HOH A . M 7 HOH 4 2004 2004 HOH HOH A . M 7 HOH 5 2005 2005 HOH HOH A . M 7 HOH 6 2006 2006 HOH HOH A . M 7 HOH 7 2007 2007 HOH HOH A . M 7 HOH 8 2008 2008 HOH HOH A . M 7 HOH 9 2009 2009 HOH HOH A . M 7 HOH 10 2010 2010 HOH HOH A . M 7 HOH 11 2011 2011 HOH HOH A . M 7 HOH 12 2012 2012 HOH HOH A . M 7 HOH 13 2013 2013 HOH HOH A . M 7 HOH 14 2014 2014 HOH HOH A . M 7 HOH 15 2015 2015 HOH HOH A . M 7 HOH 16 2016 2016 HOH HOH A . M 7 HOH 17 2017 2017 HOH HOH A . M 7 HOH 18 2018 2018 HOH HOH A . M 7 HOH 19 2019 2019 HOH HOH A . M 7 HOH 20 2020 2020 HOH HOH A . M 7 HOH 21 2021 2021 HOH HOH A . M 7 HOH 22 2022 2022 HOH HOH A . M 7 HOH 23 2023 2023 HOH HOH A . M 7 HOH 24 2024 2024 HOH HOH A . M 7 HOH 25 2025 2025 HOH HOH A . M 7 HOH 26 2026 2026 HOH HOH A . M 7 HOH 27 2027 2027 HOH HOH A . M 7 HOH 28 2028 2028 HOH HOH A . M 7 HOH 29 2029 2029 HOH HOH A . M 7 HOH 30 2030 2030 HOH HOH A . M 7 HOH 31 2031 2031 HOH HOH A . M 7 HOH 32 2032 2032 HOH HOH A . M 7 HOH 33 2033 2033 HOH HOH A . M 7 HOH 34 2034 2034 HOH HOH A . M 7 HOH 35 2035 2035 HOH HOH A . M 7 HOH 36 2036 2036 HOH HOH A . M 7 HOH 37 2037 2037 HOH HOH A . M 7 HOH 38 2038 2038 HOH HOH A . M 7 HOH 39 2039 2039 HOH HOH A . M 7 HOH 40 2040 2040 HOH HOH A . M 7 HOH 41 2041 2041 HOH HOH A . M 7 HOH 42 2042 2042 HOH HOH A . M 7 HOH 43 2043 2043 HOH HOH A . M 7 HOH 44 2044 2044 HOH HOH A . M 7 HOH 45 2045 2045 HOH HOH A . M 7 HOH 46 2046 2046 HOH HOH A . M 7 HOH 47 2047 2047 HOH HOH A . M 7 HOH 48 2048 2048 HOH HOH A . M 7 HOH 49 2049 2049 HOH HOH A . M 7 HOH 50 2050 2050 HOH HOH A . M 7 HOH 51 2051 2051 HOH HOH A . M 7 HOH 52 2052 2052 HOH HOH A . M 7 HOH 53 2053 2053 HOH HOH A . M 7 HOH 54 2054 2054 HOH HOH A . M 7 HOH 55 2055 2055 HOH HOH A . M 7 HOH 56 2056 2056 HOH HOH A . M 7 HOH 57 2057 2057 HOH HOH A . M 7 HOH 58 2058 2058 HOH HOH A . M 7 HOH 59 2059 2059 HOH HOH A . M 7 HOH 60 2060 2060 HOH HOH A . M 7 HOH 61 2061 2061 HOH HOH A . M 7 HOH 62 2062 2062 HOH HOH A . M 7 HOH 63 2063 2063 HOH HOH A . M 7 HOH 64 2064 2064 HOH HOH A . M 7 HOH 65 2065 2065 HOH HOH A . M 7 HOH 66 2066 2066 HOH HOH A . M 7 HOH 67 2067 2067 HOH HOH A . M 7 HOH 68 2068 2068 HOH HOH A . M 7 HOH 69 2069 2069 HOH HOH A . M 7 HOH 70 2070 2070 HOH HOH A . M 7 HOH 71 2071 2071 HOH HOH A . M 7 HOH 72 2072 2072 HOH HOH A . M 7 HOH 73 2073 2073 HOH HOH A . M 7 HOH 74 2074 2074 HOH HOH A . M 7 HOH 75 2075 2075 HOH HOH A . M 7 HOH 76 2076 2076 HOH HOH A . M 7 HOH 77 2077 2077 HOH HOH A . M 7 HOH 78 2078 2078 HOH HOH A . M 7 HOH 79 2079 2079 HOH HOH A . M 7 HOH 80 2080 2080 HOH HOH A . M 7 HOH 81 2081 2081 HOH HOH A . M 7 HOH 82 2082 2082 HOH HOH A . M 7 HOH 83 2083 2083 HOH HOH A . M 7 HOH 84 2084 2084 HOH HOH A . M 7 HOH 85 2085 2085 HOH HOH A . M 7 HOH 86 2086 2086 HOH HOH A . M 7 HOH 87 2087 2087 HOH HOH A . M 7 HOH 88 2088 2088 HOH HOH A . M 7 HOH 89 2089 2089 HOH HOH A . M 7 HOH 90 2090 2090 HOH HOH A . M 7 HOH 91 2091 2091 HOH HOH A . M 7 HOH 92 2092 2092 HOH HOH A . M 7 HOH 93 2093 2093 HOH HOH A . M 7 HOH 94 2094 2094 HOH HOH A . M 7 HOH 95 2095 2095 HOH HOH A . M 7 HOH 96 2096 2096 HOH HOH A . M 7 HOH 97 2097 2097 HOH HOH A . M 7 HOH 98 2098 2098 HOH HOH A . M 7 HOH 99 2099 2099 HOH HOH A . M 7 HOH 100 2100 2100 HOH HOH A . M 7 HOH 101 2101 2101 HOH HOH A . M 7 HOH 102 2102 2102 HOH HOH A . M 7 HOH 103 2103 2103 HOH HOH A . M 7 HOH 104 2104 2104 HOH HOH A . M 7 HOH 105 2105 2105 HOH HOH A . M 7 HOH 106 2106 2106 HOH HOH A . M 7 HOH 107 2107 2107 HOH HOH A . M 7 HOH 108 2108 2108 HOH HOH A . M 7 HOH 109 2109 2109 HOH HOH A . M 7 HOH 110 2110 2110 HOH HOH A . M 7 HOH 111 2111 2111 HOH HOH A . M 7 HOH 112 2112 2112 HOH HOH A . M 7 HOH 113 2113 2113 HOH HOH A . M 7 HOH 114 2114 2114 HOH HOH A . M 7 HOH 115 2115 2115 HOH HOH A . M 7 HOH 116 2116 2116 HOH HOH A . M 7 HOH 117 2117 2117 HOH HOH A . M 7 HOH 118 2118 2118 HOH HOH A . M 7 HOH 119 2119 2119 HOH HOH A . M 7 HOH 120 2120 2120 HOH HOH A . M 7 HOH 121 2121 2121 HOH HOH A . M 7 HOH 122 2122 2122 HOH HOH A . M 7 HOH 123 2123 2123 HOH HOH A . M 7 HOH 124 2124 2124 HOH HOH A . M 7 HOH 125 2125 2125 HOH HOH A . M 7 HOH 126 2126 2126 HOH HOH A . M 7 HOH 127 2127 2127 HOH HOH A . M 7 HOH 128 2128 2128 HOH HOH A . M 7 HOH 129 2129 2129 HOH HOH A . M 7 HOH 130 2130 2130 HOH HOH A . M 7 HOH 131 2131 2131 HOH HOH A . M 7 HOH 132 2132 2132 HOH HOH A . M 7 HOH 133 2133 2133 HOH HOH A . M 7 HOH 134 2134 2134 HOH HOH A . M 7 HOH 135 2135 2135 HOH HOH A . M 7 HOH 136 2136 2136 HOH HOH A . M 7 HOH 137 2137 2137 HOH HOH A . M 7 HOH 138 2138 2138 HOH HOH A . M 7 HOH 139 2139 2139 HOH HOH A . M 7 HOH 140 2140 2140 HOH HOH A . M 7 HOH 141 2141 2141 HOH HOH A . M 7 HOH 142 2142 2142 HOH HOH A . M 7 HOH 143 2143 2143 HOH HOH A . M 7 HOH 144 2144 2144 HOH HOH A . M 7 HOH 145 2145 2145 HOH HOH A . M 7 HOH 146 2146 2146 HOH HOH A . M 7 HOH 147 2147 2147 HOH HOH A . M 7 HOH 148 2148 2148 HOH HOH A . M 7 HOH 149 2149 2149 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 106 ? CG ? A GLN 107 CG 2 1 Y 1 A GLN 106 ? CD ? A GLN 107 CD 3 1 Y 1 A GLN 106 ? OE1 ? A GLN 107 OE1 4 1 Y 1 A GLN 106 ? NE2 ? A GLN 107 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0049 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 5AMH _cell.length_a 51.720 _cell.length_b 51.720 _cell.length_c 84.710 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AMH _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 5AMH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 48 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM SODIUM ACETATE PH 4.6, 2.2 M CALCIUM CHLORIDE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-06-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 1 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AMH _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.80 _reflns.d_resolution_high 1.20 _reflns.number_obs 41611 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.85 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.91 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.27 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.74 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.78 _reflns_shell.pdbx_redundancy 3.69 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AMH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 39531 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.77 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 99.82 _refine.ls_R_factor_obs 0.12716 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.12565 _refine.ls_R_factor_R_free 0.15737 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2076 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.982 _refine.correlation_coeff_Fo_to_Fc_free 0.975 _refine.B_iso_mean 24.966 _refine.aniso_B[1][1] 0.29 _refine.aniso_B[2][2] 0.29 _refine.aniso_B[3][3] -0.95 _refine.aniso_B[1][2] 0.15 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.U VALUES REFINED INDIVIDUALLY.' _refine.pdbx_starting_model 'PDB ENTRY 4V2Y' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.029 _refine.pdbx_overall_ESU_R_Free 0.031 _refine.overall_SU_ML 0.020 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.990 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 827 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 1005 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 30.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.019 ? 941 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 865 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.398 1.945 ? 1289 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.960 3.000 ? 1992 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.723 5.000 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.583 21.591 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.964 15.000 ? 147 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.455 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.127 0.200 ? 125 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.021 ? 1100 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.010 0.020 ? 260 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 4.802 8.296 ? 443 'X-RAY DIFFRACTION' ? r_mcbond_other 4.774 8.248 ? 442 'X-RAY DIFFRACTION' ? r_mcangle_it 4.943 13.919 ? 557 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 7.159 9.877 ? 498 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 6.304 3.000 ? 1806 'X-RAY DIFFRACTION' ? r_sphericity_free 30.891 5.000 ? 43 'X-RAY DIFFRACTION' ? r_sphericity_bonded 19.896 5.000 ? 1882 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.200 _refine_ls_shell.d_res_low 1.231 _refine_ls_shell.number_reflns_R_work 2847 _refine_ls_shell.R_factor_R_work 0.255 _refine_ls_shell.percent_reflns_obs 99.08 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 162 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 5AMH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5AMH _struct.title 'Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, trigonal crystal form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AMH _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, TERATOGENICITY, AROMATIC CAGE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 6 ? M N N 7 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4TVL0_9PROT _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A4TVL0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5AMH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A4TVL0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5AMH _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A4TVL0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 40 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 44 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 39 _struct_conf.end_auth_comp_id ASP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 43 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 25 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 24 A ZN 150 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc2 metalc ? ? A CYS 28 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 27 A ZN 150 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc3 metalc ? ? A ASP 44 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 43 A CA 1126 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc4 metalc ? ? A ASP 44 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 43 A CA 1126 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc5 metalc ? ? A HIS 45 ND1 ? ? ? 1_555 L NI . NI ? ? A HIS 44 A NI 1134 1_555 ? ? ? ? ? ? ? 1.777 ? ? metalc6 metalc ? ? A GLU 46 O ? ? ? 1_555 D CA . CA ? ? A GLU 45 A CA 1126 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc7 metalc ? ? A LEU 68 O ? ? ? 6_654 D CA . CA ? ? A LEU 67 A CA 1126 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc8 metalc ? ? A CYS 91 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 90 A ZN 150 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc9 metalc ? ? A CYS 94 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 93 A ZN 150 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 M HOH . O ? ? A CA 1126 A HOH 2065 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 M HOH . O ? ? A CA 1126 A HOH 2067 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc12 metalc ? ? D CA . CA ? ? ? 1_555 M HOH . O ? ? A CA 1126 A HOH 2071 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc13 metalc ? ? L NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 1134 A HOH 2068 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc14 metalc ? ? L NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 1134 A HOH 2069 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc15 metalc ? ? L NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 1134 A HOH 2070 1_555 ? ? ? ? ? ? ? 2.165 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 25 ? A CYS 24 ? 1_555 ZN ? B ZN . ? A ZN 150 ? 1_555 SG ? A CYS 28 ? A CYS 27 ? 1_555 112.0 ? 2 SG ? A CYS 25 ? A CYS 24 ? 1_555 ZN ? B ZN . ? A ZN 150 ? 1_555 SG ? A CYS 91 ? A CYS 90 ? 1_555 111.7 ? 3 SG ? A CYS 28 ? A CYS 27 ? 1_555 ZN ? B ZN . ? A ZN 150 ? 1_555 SG ? A CYS 91 ? A CYS 90 ? 1_555 103.8 ? 4 SG ? A CYS 25 ? A CYS 24 ? 1_555 ZN ? B ZN . ? A ZN 150 ? 1_555 SG ? A CYS 94 ? A CYS 93 ? 1_555 103.7 ? 5 SG ? A CYS 28 ? A CYS 27 ? 1_555 ZN ? B ZN . ? A ZN 150 ? 1_555 SG ? A CYS 94 ? A CYS 93 ? 1_555 114.1 ? 6 SG ? A CYS 91 ? A CYS 90 ? 1_555 ZN ? B ZN . ? A ZN 150 ? 1_555 SG ? A CYS 94 ? A CYS 93 ? 1_555 111.9 ? 7 OD1 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 OD2 ? A ASP 44 ? A ASP 43 ? 1_555 53.5 ? 8 OD1 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? A GLU 46 ? A GLU 45 ? 1_555 77.4 ? 9 OD2 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? A GLU 46 ? A GLU 45 ? 1_555 83.7 ? 10 OD1 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? A LEU 68 ? A LEU 67 ? 6_654 92.3 ? 11 OD2 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? A LEU 68 ? A LEU 67 ? 6_654 81.2 ? 12 O ? A GLU 46 ? A GLU 45 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? A LEU 68 ? A LEU 67 ? 6_654 164.9 ? 13 OD1 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2065 ? 1_555 73.3 ? 14 OD2 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2065 ? 1_555 124.4 ? 15 O ? A GLU 46 ? A GLU 45 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2065 ? 1_555 100.9 ? 16 O ? A LEU 68 ? A LEU 67 ? 6_654 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2065 ? 1_555 86.4 ? 17 OD1 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2067 ? 1_555 129.7 ? 18 OD2 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2067 ? 1_555 76.6 ? 19 O ? A GLU 46 ? A GLU 45 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2067 ? 1_555 92.4 ? 20 O ? A LEU 68 ? A LEU 67 ? 6_654 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2067 ? 1_555 85.7 ? 21 O ? M HOH . ? A HOH 2065 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2067 ? 1_555 156.0 ? 22 OD1 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2071 ? 1_555 139.0 ? 23 OD2 ? A ASP 44 ? A ASP 43 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2071 ? 1_555 158.2 ? 24 O ? A GLU 46 ? A GLU 45 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2071 ? 1_555 83.2 ? 25 O ? A LEU 68 ? A LEU 67 ? 6_654 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2071 ? 1_555 111.6 ? 26 O ? M HOH . ? A HOH 2065 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2071 ? 1_555 75.4 ? 27 O ? M HOH . ? A HOH 2067 ? 1_555 CA ? D CA . ? A CA 1126 ? 1_555 O ? M HOH . ? A HOH 2071 ? 1_555 86.5 ? 28 ND1 ? A HIS 45 ? A HIS 44 ? 1_555 NI ? L NI . ? A NI 1134 ? 1_555 O ? M HOH . ? A HOH 2068 ? 1_555 112.7 ? 29 ND1 ? A HIS 45 ? A HIS 44 ? 1_555 NI ? L NI . ? A NI 1134 ? 1_555 O ? M HOH . ? A HOH 2069 ? 1_555 98.3 ? 30 O ? M HOH . ? A HOH 2068 ? 1_555 NI ? L NI . ? A NI 1134 ? 1_555 O ? M HOH . ? A HOH 2069 ? 1_555 115.5 ? 31 ND1 ? A HIS 45 ? A HIS 44 ? 1_555 NI ? L NI . ? A NI 1134 ? 1_555 O ? M HOH . ? A HOH 2070 ? 1_555 113.6 ? 32 O ? M HOH . ? A HOH 2068 ? 1_555 NI ? L NI . ? A NI 1134 ? 1_555 O ? M HOH . ? A HOH 2070 ? 1_555 106.6 ? 33 O ? M HOH . ? A HOH 2069 ? 1_555 NI ? L NI . ? A NI 1134 ? 1_555 O ? M HOH . ? A HOH 2070 ? 1_555 110.2 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 107 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 106 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 108 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 107 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 4.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 31 ? ARG A 34 ? THR A 30 ARG A 33 AA 2 SER A 21 ? CYS A 25 ? SER A 20 CYS A 24 AA 3 LEU A 119 ? PRO A 123 ? LEU A 118 PRO A 122 AB 1 GLU A 46 ? PHE A 50 ? GLU A 45 PHE A 49 AB 2 ILE A 56 ? PHE A 62 ? ILE A 55 PHE A 61 AB 3 PHE A 111 ? ILE A 115 ? PHE A 110 ILE A 114 AB 4 HIS A 97 ? GLU A 103 ? HIS A 96 GLU A 102 AB 5 ASP A 85 ? CYS A 91 ? ASP A 84 CYS A 90 AB 6 LEU A 68 ? SER A 75 ? LEU A 67 SER A 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 32 ? N ILE A 31 O PHE A 23 ? O PHE A 22 AA 2 3 N ARG A 24 ? N ARG A 23 O ALA A 120 ? O ALA A 119 AB 1 2 N VAL A 49 ? N VAL A 48 O PHE A 57 ? O PHE A 56 AB 2 3 N PHE A 62 ? N PHE A 61 O PHE A 112 ? O PHE A 111 AB 3 4 N ILE A 115 ? N ILE A 114 O LEU A 98 ? O LEU A 97 AB 4 5 N GLU A 103 ? N GLU A 102 O ASP A 85 ? O ASP A 84 AB 5 6 N LEU A 90 ? N LEU A 89 O ARG A 69 ? O ARG A 68 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 150 ? 4 'BINDING SITE FOR RESIDUE ZN A 150' AC2 Software A EF2 151 ? 12 'BINDING SITE FOR RESIDUE EF2 A 151' AC3 Software A CA 1126 ? 6 'BINDING SITE FOR RESIDUE CA A 1126' AC4 Software A CL 1127 ? 3 'BINDING SITE FOR RESIDUE CL A 1127' AC5 Software A CL 1128 ? 4 'BINDING SITE FOR RESIDUE CL A 1128' AC6 Software A CL 1129 ? 3 'BINDING SITE FOR RESIDUE CL A 1129' AC7 Software A CL 1130 ? 3 'BINDING SITE FOR RESIDUE CL A 1130' AC8 Software A CL 1131 ? 6 'BINDING SITE FOR RESIDUE CL A 1131' AC9 Software A CL 1132 ? 6 'BINDING SITE FOR RESIDUE CL A 1132' BC1 Software A CL 1133 ? 2 'BINDING SITE FOR RESIDUE CL A 1133' BC2 Software A NI 1134 ? 4 'BINDING SITE FOR RESIDUE NI A 1134' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 25 ? CYS A 24 . ? 1_555 ? 2 AC1 4 CYS A 28 ? CYS A 27 . ? 1_555 ? 3 AC1 4 CYS A 91 ? CYS A 90 . ? 1_555 ? 4 AC1 4 CYS A 94 ? CYS A 93 . ? 1_555 ? 5 AC2 12 GLY A 43 ? GLY A 42 . ? 2_544 ? 6 AC2 12 ASN A 51 ? ASN A 50 . ? 1_555 ? 7 AC2 12 PRO A 52 ? PRO A 51 . ? 1_555 ? 8 AC2 12 ARG A 69 ? ARG A 68 . ? 5_554 ? 9 AC2 12 PHE A 78 ? PHE A 77 . ? 1_555 ? 10 AC2 12 SER A 79 ? SER A 78 . ? 1_555 ? 11 AC2 12 TRP A 80 ? TRP A 79 . ? 1_555 ? 12 AC2 12 TRP A 86 ? TRP A 85 . ? 1_555 ? 13 AC2 12 TRP A 100 ? TRP A 99 . ? 1_555 ? 14 AC2 12 TYR A 102 ? TYR A 101 . ? 1_555 ? 15 AC2 12 CL F . ? CL A 1128 . ? 1_555 ? 16 AC2 12 HOH M . ? HOH A 2079 . ? 1_555 ? 17 AC3 6 ASP A 44 ? ASP A 43 . ? 1_555 ? 18 AC3 6 GLU A 46 ? GLU A 45 . ? 1_555 ? 19 AC3 6 LEU A 68 ? LEU A 67 . ? 6_654 ? 20 AC3 6 HOH M . ? HOH A 2065 . ? 1_555 ? 21 AC3 6 HOH M . ? HOH A 2067 . ? 1_555 ? 22 AC3 6 HOH M . ? HOH A 2071 . ? 1_555 ? 23 AC4 3 ARG A 58 ? ARG A 57 . ? 1_555 ? 24 AC4 3 ASP A 117 ? ASP A 116 . ? 1_555 ? 25 AC4 3 HOH M . ? HOH A 2089 . ? 1_555 ? 26 AC5 4 ARG A 69 ? ARG A 68 . ? 5_554 ? 27 AC5 4 HIS A 97 ? HIS A 96 . ? 1_555 ? 28 AC5 4 TRP A 100 ? TRP A 99 . ? 1_555 ? 29 AC5 4 EF2 C . ? EF2 A 151 . ? 1_555 ? 30 AC6 3 HIS A 47 ? HIS A 46 . ? 1_555 ? 31 AC6 3 VAL A 48 ? VAL A 47 . ? 1_555 ? 32 AC6 3 GLY A 67 ? GLY A 66 . ? 6_654 ? 33 AC7 3 SER A 21 ? SER A 20 . ? 1_555 ? 34 AC7 3 ARG A 35 ? ARG A 34 . ? 1_555 ? 35 AC7 3 ASP A 36 ? ASP A 35 . ? 1_555 ? 36 AC8 6 SER A 96 ? SER A 95 . ? 5_554 ? 37 AC8 6 SER A 96 ? SER A 95 . ? 1_555 ? 38 AC8 6 HIS A 97 ? HIS A 96 . ? 5_554 ? 39 AC8 6 HIS A 97 ? HIS A 96 . ? 1_555 ? 40 AC8 6 HOH M . ? HOH A 2021 . ? 1_555 ? 41 AC8 6 HOH M . ? HOH A 2021 . ? 5_554 ? 42 AC9 6 VAL A 49 ? VAL A 48 . ? 1_555 ? 43 AC9 6 PHE A 50 ? PHE A 49 . ? 1_555 ? 44 AC9 6 GLN A 66 ? GLN A 65 . ? 6_654 ? 45 AC9 6 HOH M . ? HOH A 2039 . ? 1_555 ? 46 AC9 6 HOH M . ? HOH A 2076 . ? 1_555 ? 47 AC9 6 HOH M . ? HOH A 2102 . ? 6_654 ? 48 BC1 2 HIS A 47 ? HIS A 46 . ? 1_555 ? 49 BC1 2 HOH M . ? HOH A 2123 . ? 1_555 ? 50 BC2 4 HIS A 45 ? HIS A 44 . ? 1_555 ? 51 BC2 4 HOH M . ? HOH A 2068 . ? 1_555 ? 52 BC2 4 HOH M . ? HOH A 2069 . ? 1_555 ? 53 BC2 4 HOH M . ? HOH A 2070 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2062 ? ? O A HOH 2063 ? ? 1.93 2 1 O A HOH 2073 ? ? O A HOH 2074 ? ? 1.94 3 1 O A HOH 2080 ? ? O A HOH 2082 ? ? 2.01 4 1 O A HOH 2112 ? ? O A HOH 2114 ? ? 2.13 5 1 O A HOH 2107 ? ? O A HOH 2109 ? ? 2.15 6 1 O A LEU 69 ? ? O A HOH 2107 ? ? 2.16 7 1 O A HOH 2041 ? ? O A HOH 2060 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 45 ? ? OE2 A GLU 45 ? ? 1.159 1.252 -0.093 0.011 N 2 1 CZ A ARG 117 ? ? NH2 A ARG 117 ? ? 1.240 1.326 -0.086 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ARG 68 ? B CA A ARG 68 ? B C A ARG 68 ? ? 97.57 110.40 -12.83 2.00 N 2 1 NE A ARG 117 ? ? CZ A ARG 117 ? ? NH2 A ARG 117 ? ? 116.04 120.30 -4.26 0.50 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CL _pdbx_struct_special_symmetry.auth_seq_id 1131 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id CL _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 0 ? A ALA 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A PRO 2 ? A PRO 3 4 1 Y 1 A LEU 3 ? A LEU 4 5 1 Y 1 A ASP 4 ? A ASP 5 6 1 Y 1 A ALA 5 ? A ALA 6 7 1 Y 1 A GLY 6 ? A GLY 7 8 1 Y 1 A GLY 7 ? A GLY 8 9 1 Y 1 A GLN 8 ? A GLN 9 10 1 Y 1 A ASN 9 ? A ASN 10 11 1 Y 1 A SER 10 ? A SER 11 12 1 Y 1 A THR 11 ? A THR 12 13 1 Y 1 A GLN 12 ? A GLN 13 14 1 Y 1 A MET 13 ? A MET 14 15 1 Y 1 A VAL 14 ? A VAL 15 16 1 Y 1 A LEU 15 ? A LEU 16 17 1 Y 1 A ALA 16 ? A ALA 17 18 1 Y 1 A PRO 17 ? A PRO 18 19 1 Y 1 A ASP 124 ? A ASP 125 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CL CL CL N N 75 CYS N N N N 76 CYS CA C N R 77 CYS C C N N 78 CYS O O N N 79 CYS CB C N N 80 CYS SG S N N 81 CYS OXT O N N 82 CYS H H N N 83 CYS H2 H N N 84 CYS HA H N N 85 CYS HB2 H N N 86 CYS HB3 H N N 87 CYS HG H N N 88 CYS HXT H N N 89 EF2 O01 O N N 90 EF2 C02 C N N 91 EF2 N03 N N N 92 EF2 C04 C N N 93 EF2 O05 O N N 94 EF2 C06 C N N 95 EF2 C07 C N N 96 EF2 C08 C N S 97 EF2 N09 N N N 98 EF2 C11 C Y N 99 EF2 C12 C Y N 100 EF2 C13 C Y N 101 EF2 C14 C Y N 102 EF2 O16 O N N 103 EF2 O18 O N N 104 EF2 C19 C Y N 105 EF2 C20 C Y N 106 EF2 C3 C N N 107 EF2 C4 C N N 108 EF2 H03 H N N 109 EF2 H08 H N N 110 EF2 H061 H N N 111 EF2 H062 H N N 112 EF2 H071 H N N 113 EF2 H072 H N N 114 EF2 H11 H N N 115 EF2 H12 H N N 116 EF2 H20 H N N 117 EF2 H19 H N N 118 GLN N N N N 119 GLN CA C N S 120 GLN C C N N 121 GLN O O N N 122 GLN CB C N N 123 GLN CG C N N 124 GLN CD C N N 125 GLN OE1 O N N 126 GLN NE2 N N N 127 GLN OXT O N N 128 GLN H H N N 129 GLN H2 H N N 130 GLN HA H N N 131 GLN HB2 H N N 132 GLN HB3 H N N 133 GLN HG2 H N N 134 GLN HG3 H N N 135 GLN HE21 H N N 136 GLN HE22 H N N 137 GLN HXT H N N 138 GLU N N N N 139 GLU CA C N S 140 GLU C C N N 141 GLU O O N N 142 GLU CB C N N 143 GLU CG C N N 144 GLU CD C N N 145 GLU OE1 O N N 146 GLU OE2 O N N 147 GLU OXT O N N 148 GLU H H N N 149 GLU H2 H N N 150 GLU HA H N N 151 GLU HB2 H N N 152 GLU HB3 H N N 153 GLU HG2 H N N 154 GLU HG3 H N N 155 GLU HE2 H N N 156 GLU HXT H N N 157 GLY N N N N 158 GLY CA C N N 159 GLY C C N N 160 GLY O O N N 161 GLY OXT O N N 162 GLY H H N N 163 GLY H2 H N N 164 GLY HA2 H N N 165 GLY HA3 H N N 166 GLY HXT H N N 167 HIS N N N N 168 HIS CA C N S 169 HIS C C N N 170 HIS O O N N 171 HIS CB C N N 172 HIS CG C Y N 173 HIS ND1 N Y N 174 HIS CD2 C Y N 175 HIS CE1 C Y N 176 HIS NE2 N Y N 177 HIS OXT O N N 178 HIS H H N N 179 HIS H2 H N N 180 HIS HA H N N 181 HIS HB2 H N N 182 HIS HB3 H N N 183 HIS HD1 H N N 184 HIS HD2 H N N 185 HIS HE1 H N N 186 HIS HE2 H N N 187 HIS HXT H N N 188 HOH O O N N 189 HOH H1 H N N 190 HOH H2 H N N 191 ILE N N N N 192 ILE CA C N S 193 ILE C C N N 194 ILE O O N N 195 ILE CB C N S 196 ILE CG1 C N N 197 ILE CG2 C N N 198 ILE CD1 C N N 199 ILE OXT O N N 200 ILE H H N N 201 ILE H2 H N N 202 ILE HA H N N 203 ILE HB H N N 204 ILE HG12 H N N 205 ILE HG13 H N N 206 ILE HG21 H N N 207 ILE HG22 H N N 208 ILE HG23 H N N 209 ILE HD11 H N N 210 ILE HD12 H N N 211 ILE HD13 H N N 212 ILE HXT H N N 213 LEU N N N N 214 LEU CA C N S 215 LEU C C N N 216 LEU O O N N 217 LEU CB C N N 218 LEU CG C N N 219 LEU CD1 C N N 220 LEU CD2 C N N 221 LEU OXT O N N 222 LEU H H N N 223 LEU H2 H N N 224 LEU HA H N N 225 LEU HB2 H N N 226 LEU HB3 H N N 227 LEU HG H N N 228 LEU HD11 H N N 229 LEU HD12 H N N 230 LEU HD13 H N N 231 LEU HD21 H N N 232 LEU HD22 H N N 233 LEU HD23 H N N 234 LEU HXT H N N 235 LYS N N N N 236 LYS CA C N S 237 LYS C C N N 238 LYS O O N N 239 LYS CB C N N 240 LYS CG C N N 241 LYS CD C N N 242 LYS CE C N N 243 LYS NZ N N N 244 LYS OXT O N N 245 LYS H H N N 246 LYS H2 H N N 247 LYS HA H N N 248 LYS HB2 H N N 249 LYS HB3 H N N 250 LYS HG2 H N N 251 LYS HG3 H N N 252 LYS HD2 H N N 253 LYS HD3 H N N 254 LYS HE2 H N N 255 LYS HE3 H N N 256 LYS HZ1 H N N 257 LYS HZ2 H N N 258 LYS HZ3 H N N 259 LYS HXT H N N 260 MET N N N N 261 MET CA C N S 262 MET C C N N 263 MET O O N N 264 MET CB C N N 265 MET CG C N N 266 MET SD S N N 267 MET CE C N N 268 MET OXT O N N 269 MET H H N N 270 MET H2 H N N 271 MET HA H N N 272 MET HB2 H N N 273 MET HB3 H N N 274 MET HG2 H N N 275 MET HG3 H N N 276 MET HE1 H N N 277 MET HE2 H N N 278 MET HE3 H N N 279 MET HXT H N N 280 NI NI NI N N 281 PHE N N N N 282 PHE CA C N S 283 PHE C C N N 284 PHE O O N N 285 PHE CB C N N 286 PHE CG C Y N 287 PHE CD1 C Y N 288 PHE CD2 C Y N 289 PHE CE1 C Y N 290 PHE CE2 C Y N 291 PHE CZ C Y N 292 PHE OXT O N N 293 PHE H H N N 294 PHE H2 H N N 295 PHE HA H N N 296 PHE HB2 H N N 297 PHE HB3 H N N 298 PHE HD1 H N N 299 PHE HD2 H N N 300 PHE HE1 H N N 301 PHE HE2 H N N 302 PHE HZ H N N 303 PHE HXT H N N 304 PRO N N N N 305 PRO CA C N S 306 PRO C C N N 307 PRO O O N N 308 PRO CB C N N 309 PRO CG C N N 310 PRO CD C N N 311 PRO OXT O N N 312 PRO H H N N 313 PRO HA H N N 314 PRO HB2 H N N 315 PRO HB3 H N N 316 PRO HG2 H N N 317 PRO HG3 H N N 318 PRO HD2 H N N 319 PRO HD3 H N N 320 PRO HXT H N N 321 SER N N N N 322 SER CA C N S 323 SER C C N N 324 SER O O N N 325 SER CB C N N 326 SER OG O N N 327 SER OXT O N N 328 SER H H N N 329 SER H2 H N N 330 SER HA H N N 331 SER HB2 H N N 332 SER HB3 H N N 333 SER HG H N N 334 SER HXT H N N 335 THR N N N N 336 THR CA C N S 337 THR C C N N 338 THR O O N N 339 THR CB C N R 340 THR OG1 O N N 341 THR CG2 C N N 342 THR OXT O N N 343 THR H H N N 344 THR H2 H N N 345 THR HA H N N 346 THR HB H N N 347 THR HG1 H N N 348 THR HG21 H N N 349 THR HG22 H N N 350 THR HG23 H N N 351 THR HXT H N N 352 TRP N N N N 353 TRP CA C N S 354 TRP C C N N 355 TRP O O N N 356 TRP CB C N N 357 TRP CG C Y N 358 TRP CD1 C Y N 359 TRP CD2 C Y N 360 TRP NE1 N Y N 361 TRP CE2 C Y N 362 TRP CE3 C Y N 363 TRP CZ2 C Y N 364 TRP CZ3 C Y N 365 TRP CH2 C Y N 366 TRP OXT O N N 367 TRP H H N N 368 TRP H2 H N N 369 TRP HA H N N 370 TRP HB2 H N N 371 TRP HB3 H N N 372 TRP HD1 H N N 373 TRP HE1 H N N 374 TRP HE3 H N N 375 TRP HZ2 H N N 376 TRP HZ3 H N N 377 TRP HH2 H N N 378 TRP HXT H N N 379 TYR N N N N 380 TYR CA C N S 381 TYR C C N N 382 TYR O O N N 383 TYR CB C N N 384 TYR CG C Y N 385 TYR CD1 C Y N 386 TYR CD2 C Y N 387 TYR CE1 C Y N 388 TYR CE2 C Y N 389 TYR CZ C Y N 390 TYR OH O N N 391 TYR OXT O N N 392 TYR H H N N 393 TYR H2 H N N 394 TYR HA H N N 395 TYR HB2 H N N 396 TYR HB3 H N N 397 TYR HD1 H N N 398 TYR HD2 H N N 399 TYR HE1 H N N 400 TYR HE2 H N N 401 TYR HH H N N 402 TYR HXT H N N 403 VAL N N N N 404 VAL CA C N S 405 VAL C C N N 406 VAL O O N N 407 VAL CB C N N 408 VAL CG1 C N N 409 VAL CG2 C N N 410 VAL OXT O N N 411 VAL H H N N 412 VAL H2 H N N 413 VAL HA H N N 414 VAL HB H N N 415 VAL HG11 H N N 416 VAL HG12 H N N 417 VAL HG13 H N N 418 VAL HG21 H N N 419 VAL HG22 H N N 420 VAL HG23 H N N 421 VAL HXT H N N 422 ZN ZN ZN N N 423 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EF2 O01 C02 doub N N 83 EF2 C02 N03 sing N N 84 EF2 C02 C08 sing N N 85 EF2 N03 C04 sing N N 86 EF2 C04 O05 doub N N 87 EF2 C04 C06 sing N N 88 EF2 C06 C07 sing N N 89 EF2 C07 C08 sing N N 90 EF2 C08 N09 sing N N 91 EF2 N09 C3 sing N N 92 EF2 N09 C4 sing N N 93 EF2 C11 C12 sing Y N 94 EF2 C11 C20 doub Y N 95 EF2 C12 C13 doub Y N 96 EF2 C13 C14 sing Y N 97 EF2 C13 C4 sing N N 98 EF2 C14 C19 doub Y N 99 EF2 C14 C3 sing N N 100 EF2 O16 C4 doub N N 101 EF2 O18 C3 doub N N 102 EF2 C19 C20 sing Y N 103 EF2 N03 H03 sing N N 104 EF2 C08 H08 sing N N 105 EF2 C06 H061 sing N N 106 EF2 C06 H062 sing N N 107 EF2 C07 H071 sing N N 108 EF2 C07 H072 sing N N 109 EF2 C11 H11 sing N N 110 EF2 C12 H12 sing N N 111 EF2 C20 H20 sing N N 112 EF2 C19 H19 sing N N 113 GLN N CA sing N N 114 GLN N H sing N N 115 GLN N H2 sing N N 116 GLN CA C sing N N 117 GLN CA CB sing N N 118 GLN CA HA sing N N 119 GLN C O doub N N 120 GLN C OXT sing N N 121 GLN CB CG sing N N 122 GLN CB HB2 sing N N 123 GLN CB HB3 sing N N 124 GLN CG CD sing N N 125 GLN CG HG2 sing N N 126 GLN CG HG3 sing N N 127 GLN CD OE1 doub N N 128 GLN CD NE2 sing N N 129 GLN NE2 HE21 sing N N 130 GLN NE2 HE22 sing N N 131 GLN OXT HXT sing N N 132 GLU N CA sing N N 133 GLU N H sing N N 134 GLU N H2 sing N N 135 GLU CA C sing N N 136 GLU CA CB sing N N 137 GLU CA HA sing N N 138 GLU C O doub N N 139 GLU C OXT sing N N 140 GLU CB CG sing N N 141 GLU CB HB2 sing N N 142 GLU CB HB3 sing N N 143 GLU CG CD sing N N 144 GLU CG HG2 sing N N 145 GLU CG HG3 sing N N 146 GLU CD OE1 doub N N 147 GLU CD OE2 sing N N 148 GLU OE2 HE2 sing N N 149 GLU OXT HXT sing N N 150 GLY N CA sing N N 151 GLY N H sing N N 152 GLY N H2 sing N N 153 GLY CA C sing N N 154 GLY CA HA2 sing N N 155 GLY CA HA3 sing N N 156 GLY C O doub N N 157 GLY C OXT sing N N 158 GLY OXT HXT sing N N 159 HIS N CA sing N N 160 HIS N H sing N N 161 HIS N H2 sing N N 162 HIS CA C sing N N 163 HIS CA CB sing N N 164 HIS CA HA sing N N 165 HIS C O doub N N 166 HIS C OXT sing N N 167 HIS CB CG sing N N 168 HIS CB HB2 sing N N 169 HIS CB HB3 sing N N 170 HIS CG ND1 sing Y N 171 HIS CG CD2 doub Y N 172 HIS ND1 CE1 doub Y N 173 HIS ND1 HD1 sing N N 174 HIS CD2 NE2 sing Y N 175 HIS CD2 HD2 sing N N 176 HIS CE1 NE2 sing Y N 177 HIS CE1 HE1 sing N N 178 HIS NE2 HE2 sing N N 179 HIS OXT HXT sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 ILE N CA sing N N 183 ILE N H sing N N 184 ILE N H2 sing N N 185 ILE CA C sing N N 186 ILE CA CB sing N N 187 ILE CA HA sing N N 188 ILE C O doub N N 189 ILE C OXT sing N N 190 ILE CB CG1 sing N N 191 ILE CB CG2 sing N N 192 ILE CB HB sing N N 193 ILE CG1 CD1 sing N N 194 ILE CG1 HG12 sing N N 195 ILE CG1 HG13 sing N N 196 ILE CG2 HG21 sing N N 197 ILE CG2 HG22 sing N N 198 ILE CG2 HG23 sing N N 199 ILE CD1 HD11 sing N N 200 ILE CD1 HD12 sing N N 201 ILE CD1 HD13 sing N N 202 ILE OXT HXT sing N N 203 LEU N CA sing N N 204 LEU N H sing N N 205 LEU N H2 sing N N 206 LEU CA C sing N N 207 LEU CA CB sing N N 208 LEU CA HA sing N N 209 LEU C O doub N N 210 LEU C OXT sing N N 211 LEU CB CG sing N N 212 LEU CB HB2 sing N N 213 LEU CB HB3 sing N N 214 LEU CG CD1 sing N N 215 LEU CG CD2 sing N N 216 LEU CG HG sing N N 217 LEU CD1 HD11 sing N N 218 LEU CD1 HD12 sing N N 219 LEU CD1 HD13 sing N N 220 LEU CD2 HD21 sing N N 221 LEU CD2 HD22 sing N N 222 LEU CD2 HD23 sing N N 223 LEU OXT HXT sing N N 224 LYS N CA sing N N 225 LYS N H sing N N 226 LYS N H2 sing N N 227 LYS CA C sing N N 228 LYS CA CB sing N N 229 LYS CA HA sing N N 230 LYS C O doub N N 231 LYS C OXT sing N N 232 LYS CB CG sing N N 233 LYS CB HB2 sing N N 234 LYS CB HB3 sing N N 235 LYS CG CD sing N N 236 LYS CG HG2 sing N N 237 LYS CG HG3 sing N N 238 LYS CD CE sing N N 239 LYS CD HD2 sing N N 240 LYS CD HD3 sing N N 241 LYS CE NZ sing N N 242 LYS CE HE2 sing N N 243 LYS CE HE3 sing N N 244 LYS NZ HZ1 sing N N 245 LYS NZ HZ2 sing N N 246 LYS NZ HZ3 sing N N 247 LYS OXT HXT sing N N 248 MET N CA sing N N 249 MET N H sing N N 250 MET N H2 sing N N 251 MET CA C sing N N 252 MET CA CB sing N N 253 MET CA HA sing N N 254 MET C O doub N N 255 MET C OXT sing N N 256 MET CB CG sing N N 257 MET CB HB2 sing N N 258 MET CB HB3 sing N N 259 MET CG SD sing N N 260 MET CG HG2 sing N N 261 MET CG HG3 sing N N 262 MET SD CE sing N N 263 MET CE HE1 sing N N 264 MET CE HE2 sing N N 265 MET CE HE3 sing N N 266 MET OXT HXT sing N N 267 PHE N CA sing N N 268 PHE N H sing N N 269 PHE N H2 sing N N 270 PHE CA C sing N N 271 PHE CA CB sing N N 272 PHE CA HA sing N N 273 PHE C O doub N N 274 PHE C OXT sing N N 275 PHE CB CG sing N N 276 PHE CB HB2 sing N N 277 PHE CB HB3 sing N N 278 PHE CG CD1 doub Y N 279 PHE CG CD2 sing Y N 280 PHE CD1 CE1 sing Y N 281 PHE CD1 HD1 sing N N 282 PHE CD2 CE2 doub Y N 283 PHE CD2 HD2 sing N N 284 PHE CE1 CZ doub Y N 285 PHE CE1 HE1 sing N N 286 PHE CE2 CZ sing Y N 287 PHE CE2 HE2 sing N N 288 PHE CZ HZ sing N N 289 PHE OXT HXT sing N N 290 PRO N CA sing N N 291 PRO N CD sing N N 292 PRO N H sing N N 293 PRO CA C sing N N 294 PRO CA CB sing N N 295 PRO CA HA sing N N 296 PRO C O doub N N 297 PRO C OXT sing N N 298 PRO CB CG sing N N 299 PRO CB HB2 sing N N 300 PRO CB HB3 sing N N 301 PRO CG CD sing N N 302 PRO CG HG2 sing N N 303 PRO CG HG3 sing N N 304 PRO CD HD2 sing N N 305 PRO CD HD3 sing N N 306 PRO OXT HXT sing N N 307 SER N CA sing N N 308 SER N H sing N N 309 SER N H2 sing N N 310 SER CA C sing N N 311 SER CA CB sing N N 312 SER CA HA sing N N 313 SER C O doub N N 314 SER C OXT sing N N 315 SER CB OG sing N N 316 SER CB HB2 sing N N 317 SER CB HB3 sing N N 318 SER OG HG sing N N 319 SER OXT HXT sing N N 320 THR N CA sing N N 321 THR N H sing N N 322 THR N H2 sing N N 323 THR CA C sing N N 324 THR CA CB sing N N 325 THR CA HA sing N N 326 THR C O doub N N 327 THR C OXT sing N N 328 THR CB OG1 sing N N 329 THR CB CG2 sing N N 330 THR CB HB sing N N 331 THR OG1 HG1 sing N N 332 THR CG2 HG21 sing N N 333 THR CG2 HG22 sing N N 334 THR CG2 HG23 sing N N 335 THR OXT HXT sing N N 336 TRP N CA sing N N 337 TRP N H sing N N 338 TRP N H2 sing N N 339 TRP CA C sing N N 340 TRP CA CB sing N N 341 TRP CA HA sing N N 342 TRP C O doub N N 343 TRP C OXT sing N N 344 TRP CB CG sing N N 345 TRP CB HB2 sing N N 346 TRP CB HB3 sing N N 347 TRP CG CD1 doub Y N 348 TRP CG CD2 sing Y N 349 TRP CD1 NE1 sing Y N 350 TRP CD1 HD1 sing N N 351 TRP CD2 CE2 doub Y N 352 TRP CD2 CE3 sing Y N 353 TRP NE1 CE2 sing Y N 354 TRP NE1 HE1 sing N N 355 TRP CE2 CZ2 sing Y N 356 TRP CE3 CZ3 doub Y N 357 TRP CE3 HE3 sing N N 358 TRP CZ2 CH2 doub Y N 359 TRP CZ2 HZ2 sing N N 360 TRP CZ3 CH2 sing Y N 361 TRP CZ3 HZ3 sing N N 362 TRP CH2 HH2 sing N N 363 TRP OXT HXT sing N N 364 TYR N CA sing N N 365 TYR N H sing N N 366 TYR N H2 sing N N 367 TYR CA C sing N N 368 TYR CA CB sing N N 369 TYR CA HA sing N N 370 TYR C O doub N N 371 TYR C OXT sing N N 372 TYR CB CG sing N N 373 TYR CB HB2 sing N N 374 TYR CB HB3 sing N N 375 TYR CG CD1 doub Y N 376 TYR CG CD2 sing Y N 377 TYR CD1 CE1 sing Y N 378 TYR CD1 HD1 sing N N 379 TYR CD2 CE2 doub Y N 380 TYR CD2 HD2 sing N N 381 TYR CE1 CZ doub Y N 382 TYR CE1 HE1 sing N N 383 TYR CE2 CZ sing Y N 384 TYR CE2 HE2 sing N N 385 TYR CZ OH sing N N 386 TYR OH HH sing N N 387 TYR OXT HXT sing N N 388 VAL N CA sing N N 389 VAL N H sing N N 390 VAL N H2 sing N N 391 VAL CA C sing N N 392 VAL CA CB sing N N 393 VAL CA HA sing N N 394 VAL C O doub N N 395 VAL C OXT sing N N 396 VAL CB CG1 sing N N 397 VAL CB CG2 sing N N 398 VAL CB HB sing N N 399 VAL CG1 HG11 sing N N 400 VAL CG1 HG12 sing N N 401 VAL CG1 HG13 sing N N 402 VAL CG2 HG21 sing N N 403 VAL CG2 HG22 sing N N 404 VAL CG2 HG23 sing N N 405 VAL OXT HXT sing N N 406 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4V2Y _pdbx_initial_refinement_model.details 'PDB ENTRY 4V2Y' # _atom_sites.entry_id 5AMH _atom_sites.fract_transf_matrix[1][1] 0.019335 _atom_sites.fract_transf_matrix[1][2] 0.011163 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022326 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011805 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CL N NI O S ZN # loop_