HEADER HYDROLASE 04-SEP-15 5AN4 TITLE CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (OGG1) TITLE 2 PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO-COOLING TITLE 3 TECHNOLOGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-GLYCOSYLASE/DNA LYASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-323; COMPND 5 SYNONYM: 8-OXOGUANINE DNA GLYCOSYLASE; COMPND 6 EC: 3.2.2.23, 4.2.99.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, ALLERGEN, PYR/PYL/RCAR, BET V 1, FLAVONOIDS, AUTOMATED KEYWDS 2 CRYSTAL HARVESTING, AUTOMATED CRYO-COOLING, CRYSTALDIRECT EXPDTA X-RAY DIFFRACTION AUTHOR U.ZANDER,M.YTRE-ARNE,B.DALHUS,G.HOFFMANN,I.CORNACIU,F.CIPRIANI, AUTHOR 2 J.A.MARQUEZ REVDAT 3 08-MAY-24 5AN4 1 REMARK REVDAT 2 20-APR-16 5AN4 1 JRNL REVDAT 1 13-APR-16 5AN4 0 JRNL AUTH U.ZANDER,G.HOFFMANN,I.CORNACIU,J.-P.MARQUETTE,G.PAPP, JRNL AUTH 2 C.LANDRET,G.SEROUL,J.SINOIR,M.ROEWER,F.FELISAZ, JRNL AUTH 3 S.RODRIGUEZ-PUENTE,V.MARIAULE,P.MURPHY,M.MATHIEU,F.CIPRIANI, JRNL AUTH 4 J.A.MARQUEZ JRNL TITL AUTOMATED HARVESTING AND PROCESSING OF PROTEIN CRYSTALS JRNL TITL 2 THROUGH LASER PHOTOABLATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 72 454 2016 JRNL REFN ISSN 0907-4449 JRNL PMID 27050125 JRNL DOI 10.1107/S2059798316000954 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2807 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2419 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.840 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2496 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2281 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3407 ; 1.952 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5220 ; 1.101 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.095 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;35.340 ;22.920 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;12.923 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.672 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2859 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 612 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1247 ; 1.855 ; 1.727 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1246 ; 1.855 ; 1.726 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1557 ; 2.617 ; 2.590 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1249 ; 2.893 ; 1.945 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES, REFINED INDIVIDUALLY REMARK 4 REMARK 4 5AN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH=5.5, 0.2 M REMARK 280 AMMONIUM SULFATE, 24 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.52467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.76233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.64350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.88117 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.40583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLN A 108 CG CD OE1 NE2 REMARK 470 GLN A 125 CD OE1 NE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ARG A 206 CD NE CZ NH1 NH2 REMARK 470 LEU A 222 CD1 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 GLU A 234 OE1 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 LYS A 249 CE NZ REMARK 470 SER A 286 CB OG REMARK 470 GLN A 287 CB CG CD OE1 NE2 REMARK 470 GLN A 294 CG CD OE1 NE2 REMARK 470 LYS A 297 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 131 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 268 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 28 101.05 -170.76 REMARK 500 GLN A 43 -63.35 -93.26 REMARK 500 ALA A 60 40.23 70.96 REMARK 500 ASP A 174 -121.99 52.22 REMARK 500 GLU A 191 -7.22 79.92 REMARK 500 ALA A 258 -15.73 -140.05 REMARK 500 LYS A 261 79.33 -115.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AMW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) REMARK 900 FRA A 2 PROTEIN PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING REMARK 900 AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEINASE K PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AMY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME PROCESSED WITH THE REMARK 900 CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AMZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THAUMATIN PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AN2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN (TTR) PROCESSED WITH THE REMARK 900 CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 2-IMIDAZOL- 1-YL-1H- REMARK 900 BENZIMIDAZOLE PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING REMARK 900 AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 6-METHOXY- 7H-PURINE REMARK 900 PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- REMARK 900 COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 7-HYDROXY- 4- REMARK 900 (MORPHOLINOMETHYL)CHROMEN-2-ONE PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 6-CHLORO- 7H-PURINE REMARK 900 PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- REMARK 900 COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH N-(9H- PURIN-6-YL) REMARK 900 THIOPHENE-2-CARBOXAMIDE PROCESSED WITH THE CRYSTALDIRECT AUTOMATED REMARK 900 MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 2,4,6- TRIOXO-1-PHENYL- REMARK 900 HEXAHYDROPYRIMIDINE-5-CARBOXAMIDE PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VPS34 IN COMPLEX WITH (2S)-8-(( 3R)-3- REMARK 900 METHYLMORPHOLIN-4-YL)-1-(3-METHYL-2-OXO- BUTYL)-2-(TRIFLUOROMETHYL)- REMARK 900 3,4-DIHYDRO-2H-PYRIMIDO(1, 2-A)PYRIMIDIN-6- ONE, PROCESSED WITH THE REMARK 900 CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY DBREF 5AN4 A 12 323 UNP O15527 OGG1_HUMAN 12 323 SEQRES 1 A 312 GLY HIS ARG THR LEU ALA SER THR PRO ALA LEU TRP ALA SEQRES 2 A 312 SER ILE PRO CYS PRO ARG SER GLU LEU ARG LEU ASP LEU SEQRES 3 A 312 VAL LEU PRO SER GLY GLN SER PHE ARG TRP ARG GLU GLN SEQRES 4 A 312 SER PRO ALA HIS TRP SER GLY VAL LEU ALA ASP GLN VAL SEQRES 5 A 312 TRP THR LEU THR GLN THR GLU GLU GLN LEU HIS CYS THR SEQRES 6 A 312 VAL TYR ARG GLY ASP LYS SER GLN ALA SER ARG PRO THR SEQRES 7 A 312 PRO ASP GLU LEU GLU ALA VAL ARG LYS TYR PHE GLN LEU SEQRES 8 A 312 ASP VAL THR LEU ALA GLN LEU TYR HIS HIS TRP GLY SER SEQRES 9 A 312 VAL ASP SER HIS PHE GLN GLU VAL ALA GLN LYS PHE GLN SEQRES 10 A 312 GLY VAL ARG LEU LEU ARG GLN ASP PRO ILE GLU CYS LEU SEQRES 11 A 312 PHE SER PHE ILE CYS SER SER ASN ASN ASN ILE ALA ARG SEQRES 12 A 312 ILE THR GLY MET VAL GLU ARG LEU CYS GLN ALA PHE GLY SEQRES 13 A 312 PRO ARG LEU ILE GLN LEU ASP ASP VAL THR TYR HIS GLY SEQRES 14 A 312 PHE PRO SER LEU GLN ALA LEU ALA GLY PRO GLU VAL GLU SEQRES 15 A 312 ALA HIS LEU ARG LYS LEU GLY LEU GLY TYR ARG ALA ARG SEQRES 16 A 312 TYR VAL SER ALA SER ALA ARG ALA ILE LEU GLU GLU GLN SEQRES 17 A 312 GLY GLY LEU ALA TRP LEU GLN GLN LEU ARG GLU SER SER SEQRES 18 A 312 TYR GLU GLU ALA HIS LYS ALA LEU CYS ILE LEU PRO GLY SEQRES 19 A 312 VAL GLY THR LYS VAL ALA ASP CYS ILE CYS LEU MET ALA SEQRES 20 A 312 LEU ASP LYS PRO GLN ALA VAL PRO VAL ASP VAL HIS MET SEQRES 21 A 312 TRP HIS ILE ALA GLN ARG ASP TYR SER TRP HIS PRO THR SEQRES 22 A 312 THR SER GLN ALA LYS GLY PRO SER PRO GLN THR ASN LYS SEQRES 23 A 312 GLU LEU GLY ASN PHE PHE ARG SER LEU TRP GLY PRO TYR SEQRES 24 A 312 ALA GLY TRP ALA GLN ALA VAL LEU PHE SER ALA ASP LEU HET SO4 A 400 5 HET SO4 A 600 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *157(H2 O) HELIX 1 1 THR A 19 TRP A 23 5 5 HELIX 2 2 ARG A 34 LEU A 39 1 6 HELIX 3 3 ARG A 79 SER A 83 5 5 HELIX 4 4 THR A 89 PHE A 100 1 12 HELIX 5 5 THR A 105 VAL A 116 1 12 HELIX 6 6 ASP A 117 PHE A 127 1 11 HELIX 7 7 ASP A 136 CYS A 146 1 11 HELIX 8 8 ASN A 151 GLY A 167 1 17 HELIX 9 9 SER A 183 ALA A 188 1 6 HELIX 10 10 GLU A 191 LEU A 199 1 9 HELIX 11 11 TYR A 203 GLN A 219 1 17 HELIX 12 12 GLY A 221 SER A 231 1 11 HELIX 13 13 SER A 232 ILE A 242 1 11 HELIX 14 14 GLY A 247 LEU A 259 1 13 HELIX 15 15 ASP A 268 SER A 280 1 13 HELIX 16 16 SER A 292 GLY A 308 1 17 HELIX 17 17 TYR A 310 LEU A 323 1 14 SHEET 1 AA 5 ALA A 24 PRO A 27 0 SHEET 2 AA 5 GLN A 72 VAL A 77 -1 O LEU A 73 N ILE A 26 SHEET 3 AA 5 VAL A 63 GLN A 68 -1 O THR A 65 N THR A 76 SHEET 4 AA 5 HIS A 54 VAL A 58 -1 O TRP A 55 N LEU A 66 SHEET 5 AA 5 TRP A 47 SER A 51 -1 O ARG A 48 N SER A 56 SHEET 1 AB 2 ARG A 169 LEU A 173 0 SHEET 2 AB 2 VAL A 176 HIS A 179 -1 O VAL A 176 N LEU A 173 SITE 1 AC1 8 THR A 69 GLU A 70 GLU A 71 GLN A 72 SITE 2 AC1 8 GLY A 308 PRO A 309 HOH A 640 HOH A 680 SITE 1 AC2 7 PRO A 20 TRP A 23 ALA A 24 HIS A 74 SITE 2 AC2 7 PHE A 302 SER A 305 LEU A 306 CRYST1 106.071 106.071 47.287 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009428 0.005443 0.000000 0.00000 SCALE2 0.000000 0.010886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021147 0.00000