HEADER ENDOCYTOSIS 09-SEP-15 5AO6 TITLE ENDO180 D1-4, TRIGONAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE MANNOSE RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAINS 1-4, UNP RESIDUES 35-511; COMPND 5 SYNONYM: C-TYPE LECTIN DOMAIN FAMILY 13 MEMBER E, ENDOCYTIC RECEPTOR COMPND 6 180, MACROPHAGE MANNOSE RECEPTOR 2, UROKINASE-TYPE PLASMINOGEN COMPND 7 ACTIVATOR RECEPTOR-ASSOCIATED PROTEIN, UPAR-ASSOCIATED PROTEIN, COMPND 8 UROKINASE RECEPTOR-ASSOCIATED PROTEIN, C-TYPE LECTIN DOMAIN FAMILY 13 COMPND 9 MEMBER E, ENDOCYTIC RECEPTOR 180, MACROPHAGE MANNOSE RECEPTOR 2, COMPND 10 UROKINASE-TYPE PLASMINOGEN ACTIVATOR RECEPTOR-ASSOCIATED PROTEIN, COMPND 11 UPAR-ASSOCIATED PROTEIN, UROKINASE RECEPTOR-ASSOCIATED PROTEIN, CD2 COMPND 12 80; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCEP-PU KEYWDS ENDOCYTOSIS, ENDOCYTIC RECEPTOR, FIBRONECTIN TYPE II DOMAIN, C-TYPE KEYWDS 2 LECTIN DOMAIN, COLLAGEN, GELATIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PARACUELLOS,D.C.BRIGGS,F.CARAFOLI,T.LONCAR,E.HOHENESTER REVDAT 5 10-JAN-24 5AO6 1 REMARK REVDAT 4 23-OCT-19 5AO6 1 ATOM REVDAT 3 18-NOV-15 5AO6 1 JRNL REVDAT 2 04-NOV-15 5AO6 1 JRNL REVDAT 1 28-OCT-15 5AO6 0 JRNL AUTH P.PARACUELLOS,D.C.BRIGGS,F.CARAFOLI,T.LONCAR,E.HOHENESTER JRNL TITL INSIGHTS INTO COLLAGEN UPTAKE BY C-TYPE MANNOSE RECEPTORS JRNL TITL 2 FROM THE CRYSTAL STRUCTURE OF ENDO180 DOMAINS 1-4. JRNL REF STRUCTURE V. 23 2133 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26481812 JRNL DOI 10.1016/J.STR.2015.09.004 REMARK 2 REMARK 2 RESOLUTION. 3.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 20824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.2198 - 6.7186 0.99 2680 110 0.2095 0.3115 REMARK 3 2 6.7186 - 5.3334 0.99 2502 132 0.2156 0.2844 REMARK 3 3 5.3334 - 4.6594 0.99 2471 137 0.1771 0.2479 REMARK 3 4 4.6594 - 4.2335 0.99 2445 136 0.1916 0.2800 REMARK 3 5 4.2335 - 3.9301 0.99 2412 147 0.2176 0.2900 REMARK 3 6 3.9301 - 3.6984 0.99 2422 135 0.2569 0.3496 REMARK 3 7 3.6984 - 3.5132 1.00 2420 137 0.2770 0.3871 REMARK 3 8 3.5132 - 3.3602 1.00 2406 132 0.3195 0.4089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7053 REMARK 3 ANGLE : 0.982 9567 REMARK 3 CHIRALITY : 0.038 979 REMARK 3 PLANARITY : 0.004 1243 REMARK 3 DIHEDRAL : 14.903 2457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20831 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.360 REMARK 200 RESOLUTION RANGE LOW (A) : 75.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5AO5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 214.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.02333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.02333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 214.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 LEU A 33 REMARK 465 ALA A 34 REMARK 465 ASP A 35 REMARK 465 ALA A 36 REMARK 465 ALA A 37 REMARK 465 LEU A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 99 REMARK 465 GLY A 100 REMARK 465 THR A 101 REMARK 465 ASN A 102 REMARK 465 THR A 103 REMARK 465 THR A 104 REMARK 465 THR A 138 REMARK 465 SER A 139 REMARK 465 ASN A 140 REMARK 465 ILE A 141 REMARK 465 SER A 142 REMARK 465 LYS A 143 REMARK 465 PRO A 144 REMARK 465 GLY A 145 REMARK 465 THR A 146 REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 ARG A 149 REMARK 465 GLY A 150 REMARK 465 ASP A 151 REMARK 465 GLN A 152 REMARK 465 THR A 153 REMARK 465 ARG A 154 REMARK 465 ALA A 365 REMARK 465 THR A 366 REMARK 465 ALA A 367 REMARK 465 GLU A 368 REMARK 465 PRO A 369 REMARK 465 THR A 370 REMARK 465 PRO A 371 REMARK 465 PRO A 372 REMARK 465 ASP A 373 REMARK 465 ARG A 374 REMARK 465 TRP A 375 REMARK 465 ALA A 376 REMARK 465 ASN A 377 REMARK 465 VAL A 378 REMARK 465 LYS A 379 REMARK 465 GLY A 508 REMARK 465 GLN A 509 REMARK 465 LEU A 510 REMARK 465 SER A 511 REMARK 465 GLY A 512 REMARK 465 ALA A 513 REMARK 465 ALA A 514 REMARK 465 ALA A 515 REMARK 465 HIS A 516 REMARK 465 HIS A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 ALA B 31 REMARK 465 PRO B 32 REMARK 465 LEU B 33 REMARK 465 ALA B 34 REMARK 465 ASP B 35 REMARK 465 ALA B 36 REMARK 465 ALA B 37 REMARK 465 LEU B 38 REMARK 465 PRO B 39 REMARK 465 PRO B 99 REMARK 465 GLY B 100 REMARK 465 THR B 101 REMARK 465 ASN B 102 REMARK 465 THR B 103 REMARK 465 THR B 104 REMARK 465 ALA B 105 REMARK 465 ARG B 137 REMARK 465 THR B 138 REMARK 465 SER B 139 REMARK 465 ASN B 140 REMARK 465 ILE B 141 REMARK 465 SER B 142 REMARK 465 LYS B 143 REMARK 465 PRO B 144 REMARK 465 GLY B 145 REMARK 465 THR B 146 REMARK 465 LEU B 147 REMARK 465 GLU B 148 REMARK 465 ARG B 149 REMARK 465 GLY B 150 REMARK 465 ASP B 151 REMARK 465 GLN B 152 REMARK 465 THR B 153 REMARK 465 ARG B 154 REMARK 465 ALA B 365 REMARK 465 THR B 366 REMARK 465 ALA B 367 REMARK 465 GLU B 368 REMARK 465 PRO B 369 REMARK 465 THR B 370 REMARK 465 PRO B 371 REMARK 465 PRO B 372 REMARK 465 ASP B 373 REMARK 465 ARG B 374 REMARK 465 TRP B 375 REMARK 465 GLY B 512 REMARK 465 ALA B 513 REMARK 465 ALA B 514 REMARK 465 ALA B 515 REMARK 465 HIS B 516 REMARK 465 HIS B 517 REMARK 465 HIS B 518 REMARK 465 HIS B 519 REMARK 465 HIS B 520 REMARK 465 HIS B 521 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 SER A 155 OG REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 GLN A 196 CG CD OE1 NE2 REMARK 470 GLN A 217 CG CD OE1 NE2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ASP A 325 CG OD1 OD2 REMARK 470 ASN A 364 CG OD1 ND2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 ARG A 395 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 412 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 GLN A 432 CG CD OE1 NE2 REMARK 470 GLU A 436 CG CD OE1 OE2 REMARK 470 ARG A 475 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 51 CG CD1 CD2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 ASN B 364 CG OD1 ND2 REMARK 470 ASN B 377 CG OD1 ND2 REMARK 470 VAL B 378 CG1 CG2 REMARK 470 LYS B 379 CG CD CE NZ REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 470 LYS B 448 CG CD CE NZ REMARK 470 GLN B 509 CG CD OE1 NE2 REMARK 470 SER B 511 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 182 OG1 THR B 215 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 124 OD2 ASP A 476 5545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 136 23.42 -72.21 REMARK 500 GLU A 164 67.92 -67.18 REMARK 500 THR A 237 -48.69 72.90 REMARK 500 ALA A 271 -166.44 -123.72 REMARK 500 ASN A 321 36.84 -151.66 REMARK 500 ASP A 325 45.31 -95.05 REMARK 500 GLN A 390 -124.43 50.19 REMARK 500 GLN A 435 -133.80 60.88 REMARK 500 GLU A 436 30.22 -91.98 REMARK 500 ASP A 446 34.62 -143.09 REMARK 500 MET A 451 -13.49 74.10 REMARK 500 ASN A 472 -2.03 -149.05 REMARK 500 LEU A 478 -70.19 62.72 REMARK 500 GLU B 164 69.75 -67.57 REMARK 500 THR B 237 -47.58 70.12 REMARK 500 ALA B 271 -163.98 -123.31 REMARK 500 ASN B 314 17.97 53.10 REMARK 500 ASN B 321 36.54 -153.47 REMARK 500 ASP B 325 45.04 -96.76 REMARK 500 VAL B 378 -72.71 -118.26 REMARK 500 GLN B 390 -124.70 50.93 REMARK 500 ILE B 433 -61.88 -90.19 REMARK 500 GLN B 435 -133.34 62.10 REMARK 500 GLU B 436 31.43 -92.18 REMARK 500 ASP B 446 31.88 -141.50 REMARK 500 MET B 451 -10.63 74.74 REMARK 500 ASN B 472 -0.57 -149.33 REMARK 500 LEU B 478 -63.40 61.84 REMARK 500 GLU B 479 71.26 -69.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AO5 RELATED DB: PDB REMARK 900 ENDO180 D1-4, MONOCLINIC FORM DBREF 5AO6 A 35 511 UNP Q9UBG0 MRC2_HUMAN 35 511 DBREF 5AO6 B 35 511 UNP Q9UBG0 MRC2_HUMAN 35 511 SEQADV 5AO6 ALA A 31 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 PRO A 32 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 LEU A 33 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA A 34 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 GLY A 512 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA A 513 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA A 514 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA A 515 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS A 516 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS A 517 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS A 518 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS A 519 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS A 520 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS A 521 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA B 31 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 PRO B 32 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 LEU B 33 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA B 34 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 GLY B 512 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA B 513 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA B 514 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 ALA B 515 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS B 516 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS B 517 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS B 518 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS B 519 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS B 520 UNP Q9UBG0 EXPRESSION TAG SEQADV 5AO6 HIS B 521 UNP Q9UBG0 EXPRESSION TAG SEQRES 1 A 491 ALA PRO LEU ALA ASP ALA ALA LEU PRO GLU PRO ASN VAL SEQRES 2 A 491 PHE LEU ILE PHE SER HIS GLY LEU GLN GLY CYS LEU GLU SEQRES 3 A 491 ALA GLN GLY GLY GLN VAL ARG VAL THR PRO ALA CYS ASN SEQRES 4 A 491 THR SER LEU PRO ALA GLN ARG TRP LYS TRP VAL SER ARG SEQRES 5 A 491 ASN ARG LEU PHE ASN LEU GLY THR MET GLN CYS LEU GLY SEQRES 6 A 491 THR GLY TRP PRO GLY THR ASN THR THR ALA SER LEU GLY SEQRES 7 A 491 MET TYR GLU CYS ASP ARG GLU ALA LEU ASN LEU ARG TRP SEQRES 8 A 491 HIS CYS ARG THR LEU GLY ASP GLN LEU SER LEU LEU LEU SEQRES 9 A 491 GLY ALA ARG THR SER ASN ILE SER LYS PRO GLY THR LEU SEQRES 10 A 491 GLU ARG GLY ASP GLN THR ARG SER GLY GLN TRP ARG ILE SEQRES 11 A 491 TYR GLY SER GLU GLU ASP LEU CYS ALA LEU PRO TYR HIS SEQRES 12 A 491 GLU VAL TYR THR ILE GLN GLY ASN SER HIS GLY LYS PRO SEQRES 13 A 491 CYS THR ILE PRO PHE LYS TYR ASP ASN GLN TRP PHE HIS SEQRES 14 A 491 GLY CYS THR SER THR GLY ARG GLU ASP GLY HIS LEU TRP SEQRES 15 A 491 CYS ALA THR THR GLN ASP TYR GLY LYS ASP GLU ARG TRP SEQRES 16 A 491 GLY PHE CYS PRO ILE LYS SER ASN ASP CYS GLU THR PHE SEQRES 17 A 491 TRP ASP LYS ASP GLN LEU THR ASP SER CYS TYR GLN PHE SEQRES 18 A 491 ASN PHE GLN SER THR LEU SER TRP ARG GLU ALA TRP ALA SEQRES 19 A 491 SER CYS GLU GLN GLN GLY ALA ASP LEU LEU SER ILE THR SEQRES 20 A 491 GLU ILE HIS GLU GLN THR TYR ILE ASN GLY LEU LEU THR SEQRES 21 A 491 GLY TYR SER SER THR LEU TRP ILE GLY LEU ASN ASP LEU SEQRES 22 A 491 ASP THR SER GLY GLY TRP GLN TRP SER ASP ASN SER PRO SEQRES 23 A 491 LEU LYS TYR LEU ASN TRP GLU SER ASP GLN PRO ASP ASN SEQRES 24 A 491 PRO SER GLU GLU ASN CYS GLY VAL ILE ARG THR GLU SER SEQRES 25 A 491 SER GLY GLY TRP GLN ASN ARG ASP CYS SER ILE ALA LEU SEQRES 26 A 491 PRO TYR VAL CYS LYS LYS LYS PRO ASN ALA THR ALA GLU SEQRES 27 A 491 PRO THR PRO PRO ASP ARG TRP ALA ASN VAL LYS VAL GLU SEQRES 28 A 491 CYS GLU PRO SER TRP GLN PRO PHE GLN GLY HIS CYS TYR SEQRES 29 A 491 ARG LEU GLN ALA GLU LYS ARG SER TRP GLN GLU SER LYS SEQRES 30 A 491 LYS ALA CYS LEU ARG GLY GLY GLY ASP LEU VAL SER ILE SEQRES 31 A 491 HIS SER MET ALA GLU LEU GLU PHE ILE THR LYS GLN ILE SEQRES 32 A 491 LYS GLN GLU VAL GLU GLU LEU TRP ILE GLY LEU ASN ASP SEQRES 33 A 491 LEU LYS LEU GLN MET ASN PHE GLU TRP SER ASP GLY SER SEQRES 34 A 491 LEU VAL SER PHE THR HIS TRP HIS PRO PHE GLU PRO ASN SEQRES 35 A 491 ASN PHE ARG ASP SER LEU GLU ASP CYS VAL THR ILE TRP SEQRES 36 A 491 GLY PRO GLU GLY ARG TRP ASN ASP SER PRO CYS ASN GLN SEQRES 37 A 491 SER LEU PRO SER ILE CYS LYS LYS ALA GLY GLN LEU SER SEQRES 38 A 491 GLY ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 491 ALA PRO LEU ALA ASP ALA ALA LEU PRO GLU PRO ASN VAL SEQRES 2 B 491 PHE LEU ILE PHE SER HIS GLY LEU GLN GLY CYS LEU GLU SEQRES 3 B 491 ALA GLN GLY GLY GLN VAL ARG VAL THR PRO ALA CYS ASN SEQRES 4 B 491 THR SER LEU PRO ALA GLN ARG TRP LYS TRP VAL SER ARG SEQRES 5 B 491 ASN ARG LEU PHE ASN LEU GLY THR MET GLN CYS LEU GLY SEQRES 6 B 491 THR GLY TRP PRO GLY THR ASN THR THR ALA SER LEU GLY SEQRES 7 B 491 MET TYR GLU CYS ASP ARG GLU ALA LEU ASN LEU ARG TRP SEQRES 8 B 491 HIS CYS ARG THR LEU GLY ASP GLN LEU SER LEU LEU LEU SEQRES 9 B 491 GLY ALA ARG THR SER ASN ILE SER LYS PRO GLY THR LEU SEQRES 10 B 491 GLU ARG GLY ASP GLN THR ARG SER GLY GLN TRP ARG ILE SEQRES 11 B 491 TYR GLY SER GLU GLU ASP LEU CYS ALA LEU PRO TYR HIS SEQRES 12 B 491 GLU VAL TYR THR ILE GLN GLY ASN SER HIS GLY LYS PRO SEQRES 13 B 491 CYS THR ILE PRO PHE LYS TYR ASP ASN GLN TRP PHE HIS SEQRES 14 B 491 GLY CYS THR SER THR GLY ARG GLU ASP GLY HIS LEU TRP SEQRES 15 B 491 CYS ALA THR THR GLN ASP TYR GLY LYS ASP GLU ARG TRP SEQRES 16 B 491 GLY PHE CYS PRO ILE LYS SER ASN ASP CYS GLU THR PHE SEQRES 17 B 491 TRP ASP LYS ASP GLN LEU THR ASP SER CYS TYR GLN PHE SEQRES 18 B 491 ASN PHE GLN SER THR LEU SER TRP ARG GLU ALA TRP ALA SEQRES 19 B 491 SER CYS GLU GLN GLN GLY ALA ASP LEU LEU SER ILE THR SEQRES 20 B 491 GLU ILE HIS GLU GLN THR TYR ILE ASN GLY LEU LEU THR SEQRES 21 B 491 GLY TYR SER SER THR LEU TRP ILE GLY LEU ASN ASP LEU SEQRES 22 B 491 ASP THR SER GLY GLY TRP GLN TRP SER ASP ASN SER PRO SEQRES 23 B 491 LEU LYS TYR LEU ASN TRP GLU SER ASP GLN PRO ASP ASN SEQRES 24 B 491 PRO SER GLU GLU ASN CYS GLY VAL ILE ARG THR GLU SER SEQRES 25 B 491 SER GLY GLY TRP GLN ASN ARG ASP CYS SER ILE ALA LEU SEQRES 26 B 491 PRO TYR VAL CYS LYS LYS LYS PRO ASN ALA THR ALA GLU SEQRES 27 B 491 PRO THR PRO PRO ASP ARG TRP ALA ASN VAL LYS VAL GLU SEQRES 28 B 491 CYS GLU PRO SER TRP GLN PRO PHE GLN GLY HIS CYS TYR SEQRES 29 B 491 ARG LEU GLN ALA GLU LYS ARG SER TRP GLN GLU SER LYS SEQRES 30 B 491 LYS ALA CYS LEU ARG GLY GLY GLY ASP LEU VAL SER ILE SEQRES 31 B 491 HIS SER MET ALA GLU LEU GLU PHE ILE THR LYS GLN ILE SEQRES 32 B 491 LYS GLN GLU VAL GLU GLU LEU TRP ILE GLY LEU ASN ASP SEQRES 33 B 491 LEU LYS LEU GLN MET ASN PHE GLU TRP SER ASP GLY SER SEQRES 34 B 491 LEU VAL SER PHE THR HIS TRP HIS PRO PHE GLU PRO ASN SEQRES 35 B 491 ASN PHE ARG ASP SER LEU GLU ASP CYS VAL THR ILE TRP SEQRES 36 B 491 GLY PRO GLU GLY ARG TRP ASN ASP SER PRO CYS ASN GLN SEQRES 37 B 491 SER LEU PRO SER ILE CYS LYS LYS ALA GLY GLN LEU SER SEQRES 38 B 491 GLY ALA ALA ALA HIS HIS HIS HIS HIS HIS HELIX 1 1 LEU A 72 GLN A 75 5 4 HELIX 2 2 HIS A 122 GLY A 135 1 14 HELIX 3 3 ASP A 218 GLU A 223 1 6 HELIX 4 4 SER A 258 GLN A 268 1 11 HELIX 5 5 GLU A 278 ASN A 286 1 9 HELIX 6 6 SER A 402 ARG A 412 1 11 HELIX 7 7 SER A 422 GLN A 432 1 11 HELIX 8 8 LEU B 72 GLN B 75 5 4 HELIX 9 9 SER B 81 ASN B 83 5 3 HELIX 10 10 HIS B 122 GLY B 135 1 14 HELIX 11 11 ASP B 218 GLU B 223 1 6 HELIX 12 12 SER B 258 GLN B 268 1 11 HELIX 13 13 GLU B 278 GLY B 287 1 10 HELIX 14 14 SER B 402 GLY B 413 1 12 HELIX 15 15 SER B 422 GLN B 432 1 11 HELIX 16 16 ASN B 473 LEU B 478 1 6 SHEET 1 AA 4 GLN A 61 THR A 65 0 SHEET 2 AA 4 GLY A 53 GLN A 58 -1 O CYS A 54 N THR A 65 SHEET 3 AA 4 ILE A 46 SER A 48 -1 O ILE A 46 N LEU A 55 SHEET 4 AA 4 TRP A 158 ILE A 160 -1 O ARG A 159 N PHE A 47 SHEET 1 AB 4 TRP A 77 VAL A 80 0 SHEET 2 AB 4 ARG A 84 ASN A 87 -1 O ARG A 84 N VAL A 80 SHEET 3 AB 4 GLN A 92 GLY A 95 -1 O GLN A 92 N ASN A 87 SHEET 4 AB 4 GLY A 108 TYR A 110 -1 O GLY A 108 N GLY A 95 SHEET 1 AC 2 PHE A 191 TYR A 193 0 SHEET 2 AC 2 GLN A 196 PHE A 198 -1 O GLN A 196 N TYR A 193 SHEET 1 AD 2 TRP A 212 ALA A 214 0 SHEET 2 AD 2 TRP A 225 PHE A 227 -1 O GLY A 226 N CYS A 213 SHEET 1 AE 4 ASP A 240 LYS A 241 0 SHEET 2 AE 4 CYS A 248 LEU A 257 -1 O TYR A 249 N ASP A 240 SHEET 3 AE 4 LEU A 355 LYS A 361 -1 O LEU A 355 N LEU A 257 SHEET 4 AE 4 ASP A 272 LEU A 273 -1 O ASP A 272 N LYS A 360 SHEET 1 AF 4 GLN A 310 TRP A 311 0 SHEET 2 AF 4 THR A 295 ASN A 301 -1 O ASN A 301 N GLN A 310 SHEET 3 AF 4 CYS A 335 ARG A 339 -1 O GLY A 336 N ILE A 298 SHEET 4 AF 4 TRP A 346 ARG A 349 -1 O GLN A 347 N VAL A 337 SHEET 1 AG 4 GLN A 387 PHE A 389 0 SHEET 2 AG 4 HIS A 392 ARG A 401 -1 O HIS A 392 N PHE A 389 SHEET 3 AG 4 LEU A 500 LYS A 506 -1 O LEU A 500 N ARG A 401 SHEET 4 AG 4 ASP A 416 LEU A 417 -1 O ASP A 416 N LYS A 505 SHEET 1 AH 4 ASN A 452 TRP A 455 0 SHEET 2 AH 4 GLU A 439 LEU A 449 -1 O ASN A 445 N GLU A 454 SHEET 3 AH 4 ASP A 480 TRP A 485 -1 O ASP A 480 N ASP A 446 SHEET 4 AH 4 TRP A 491 PRO A 495 -1 O ASN A 492 N THR A 483 SHEET 1 BA 5 VAL B 43 PHE B 44 0 SHEET 2 BA 5 TRP B 77 VAL B 80 -1 O TRP B 77 N PHE B 44 SHEET 3 BA 5 ARG B 84 ASN B 87 -1 O ARG B 84 N VAL B 80 SHEET 4 BA 5 GLN B 92 GLY B 95 -1 O GLN B 92 N ASN B 87 SHEET 5 BA 5 GLY B 108 TYR B 110 -1 O GLY B 108 N GLY B 95 SHEET 1 BB 4 GLN B 61 THR B 65 0 SHEET 2 BB 4 GLY B 53 GLN B 58 -1 O CYS B 54 N THR B 65 SHEET 3 BB 4 ILE B 46 SER B 48 -1 O ILE B 46 N LEU B 55 SHEET 4 BB 4 TRP B 158 ILE B 160 -1 O ARG B 159 N PHE B 47 SHEET 1 BC 2 PHE B 191 TYR B 193 0 SHEET 2 BC 2 GLN B 196 PHE B 198 -1 O GLN B 196 N TYR B 193 SHEET 1 BD 2 TRP B 212 ALA B 214 0 SHEET 2 BD 2 TRP B 225 PHE B 227 -1 O GLY B 226 N CYS B 213 SHEET 1 BE 4 ASP B 240 LYS B 241 0 SHEET 2 BE 4 CYS B 248 LEU B 257 -1 O TYR B 249 N ASP B 240 SHEET 3 BE 4 LEU B 355 LYS B 361 -1 O LEU B 355 N LEU B 257 SHEET 4 BE 4 ASP B 272 LEU B 273 -1 O ASP B 272 N LYS B 360 SHEET 1 BF 4 GLN B 310 TRP B 311 0 SHEET 2 BF 4 THR B 295 ASN B 301 -1 O ASN B 301 N GLN B 310 SHEET 3 BF 4 CYS B 335 ARG B 339 -1 O GLY B 336 N ILE B 298 SHEET 4 BF 4 TRP B 346 ARG B 349 -1 O GLN B 347 N VAL B 337 SHEET 1 BG 4 GLN B 387 PHE B 389 0 SHEET 2 BG 4 HIS B 392 ARG B 401 -1 O HIS B 392 N PHE B 389 SHEET 3 BG 4 LEU B 500 ALA B 507 -1 O LEU B 500 N ARG B 401 SHEET 4 BG 4 ASP B 416 LEU B 417 -1 O ASP B 416 N LYS B 505 SHEET 1 BH 4 ASN B 452 TRP B 455 0 SHEET 2 BH 4 GLU B 439 LEU B 449 -1 O ASN B 445 N GLU B 454 SHEET 3 BH 4 ASP B 480 TRP B 485 -1 O ASP B 480 N ASP B 446 SHEET 4 BH 4 ARG B 490 PRO B 495 -1 O ARG B 490 N TRP B 485 SSBOND 1 CYS A 54 CYS A 68 1555 1555 2.03 SSBOND 2 CYS A 93 CYS A 112 1555 1555 2.03 SSBOND 3 CYS A 123 CYS A 168 1555 1555 2.03 SSBOND 4 CYS A 187 CYS A 213 1555 1555 2.04 SSBOND 5 CYS A 201 CYS A 228 1555 1555 2.03 SSBOND 6 CYS A 235 CYS A 248 1555 1555 2.03 SSBOND 7 CYS A 266 CYS A 359 1555 1555 2.04 SSBOND 8 CYS A 335 CYS A 351 1555 1555 2.04 SSBOND 9 CYS A 382 CYS A 393 1555 1555 2.03 SSBOND 10 CYS A 410 CYS A 504 1555 1555 2.03 SSBOND 11 CYS A 481 CYS A 496 1555 1555 2.04 SSBOND 12 CYS B 54 CYS B 68 1555 1555 2.04 SSBOND 13 CYS B 93 CYS B 112 1555 1555 2.04 SSBOND 14 CYS B 123 CYS B 168 1555 1555 2.03 SSBOND 15 CYS B 187 CYS B 213 1555 1555 2.02 SSBOND 16 CYS B 201 CYS B 228 1555 1555 2.03 SSBOND 17 CYS B 235 CYS B 248 1555 1555 2.03 SSBOND 18 CYS B 266 CYS B 359 1555 1555 2.03 SSBOND 19 CYS B 335 CYS B 351 1555 1555 2.04 SSBOND 20 CYS B 382 CYS B 393 1555 1555 2.03 SSBOND 21 CYS B 410 CYS B 504 1555 1555 2.03 SSBOND 22 CYS B 481 CYS B 496 1555 1555 2.03 CISPEP 1 ILE A 189 PRO A 190 0 -3.97 CISPEP 2 ASN A 286 GLY A 287 0 8.87 CISPEP 3 GLN A 326 PRO A 327 0 -2.28 CISPEP 4 GLU A 470 PRO A 471 0 -3.06 CISPEP 5 ILE B 189 PRO B 190 0 -2.13 CISPEP 6 ASN B 286 GLY B 287 0 8.52 CISPEP 7 GLY B 308 TRP B 309 0 -20.07 CISPEP 8 GLN B 326 PRO B 327 0 -2.14 CISPEP 9 GLU B 470 PRO B 471 0 -3.52 CRYST1 87.000 87.000 321.070 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011494 0.006636 0.000000 0.00000 SCALE2 0.000000 0.013272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003115 0.00000