HEADER OXIDOREDUCTASE 10-SEP-15 5AOG TITLE STRUCTURE OF SORGHUM PEROXIDASE CAVEAT 5AOG NAG B 3 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC PEROXIDASE SPC4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEME PEROXIDASE; COMPND 5 EC: 1.11.1.7; COMPND 6 OTHER_DETAILS: GLYCOSYLATED AT ASN 234 AND ASN 332 IAC AND GOL COMPND 7 INTERPRETED AT HEME EDGE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 3 ORGANISM_COMMON: SORGHUM; SOURCE 4 ORGANISM_TAXID: 4558; SOURCE 5 STRAIN: SK 5912L; SOURCE 6 TISSUE: SEED; SOURCE 7 OTHER_DETAILS: INSTITUTE FOR AGRICULTURAL RESEARCH OF THE AHMADU SOURCE 8 BELLO UNIVERSITY ZARIA, NIGERIA KEYWDS OXIDOREDUCTASE, HEME PEROXIDASE, GLYCOSLYLATION, SORGHUM, PLANT KEYWDS 2 PEROXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KWON,C.I.NNAMCHI,G.PARKIN,I.EFIMOV,J.AGIRRE,J.BASRAN,E.L.RAVEN, AUTHOR 2 P.C.E.MOODY REVDAT 4 10-JAN-24 5AOG 1 HETSYN LINK REVDAT 3 29-JUL-20 5AOG 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 16-MAR-16 5AOG 1 JRNL REVDAT 1 13-JAN-16 5AOG 0 JRNL AUTH C.I.NNAMCHI,G.PARKIN,I.EFIMOV,J.BASRAN,H.KWON, JRNL AUTH 2 D.A.SVISTUNENKO,J.AGIRRE,B.N.OKOLO,A.MONEKE,B.C.NWANGUMA, JRNL AUTH 3 P.C.E.MOODY,E.L.RAVEN JRNL TITL STRUCTURAL AND SPECTROSCOPIC CHARACTERISATION OF A HEME JRNL TITL 2 PEROXIDASE FROM SORGHUM. JRNL REF J.BIOL.INORG.CHEM. V. 21 63 2016 JRNL REFN ISSN 0949-8257 JRNL PMID 26666777 JRNL DOI 10.1007/S00775-015-1313-Z REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 103499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 393 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 171 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.034 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2600 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2414 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3582 ; 1.478 ; 2.042 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5521 ; 1.219 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;32.531 ;22.952 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;11.854 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2935 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 600 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1258 ; 3.640 ; 2.361 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1256 ; 3.632 ; 2.358 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1578 ; 3.984 ; 3.559 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 5.434 ; 2.861 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5014 ; 7.266 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 74 ;37.902 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5147 ;17.923 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5AOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 36.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BGP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM PHOSPHATE 4 M SODIUM REMARK 280 FORMATE PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.47000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.94000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 138.94000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.47000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2205 O HOH A 2206 1.74 REMARK 500 O HOH A 2252 O HOH A 2253 1.84 REMARK 500 NH1 ARG A 300 O HOH A 2233 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2191 O HOH A 2228 4455 1.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 50 81.09 -163.34 REMARK 500 ASP A 68 89.06 -150.22 REMARK 500 GLN A 86 -36.30 76.01 REMARK 500 ASP A 89 11.28 -143.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1343 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 O REMARK 620 2 ASP A 82 OD1 83.6 REMARK 620 3 VAL A 85 O 74.7 137.8 REMARK 620 4 GLY A 87 O 70.2 106.3 99.8 REMARK 620 5 ASP A 89 OD1 143.6 95.7 123.0 75.3 REMARK 620 6 SER A 91 OG 140.9 91.9 83.3 146.7 75.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1341 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 211 NE2 REMARK 620 2 HEM A1341 NA 90.8 REMARK 620 3 HEM A1341 NB 91.3 89.3 REMARK 620 4 HEM A1341 NC 91.6 177.5 90.2 REMARK 620 5 HEM A1341 ND 90.8 90.9 177.9 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1342 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 212 O REMARK 620 2 THR A 212 OG1 74.6 REMARK 620 3 ASP A 257 OD2 90.7 84.8 REMARK 620 4 THR A 260 O 80.9 154.4 88.1 REMARK 620 5 THR A 260 OG1 150.8 134.1 87.5 69.9 REMARK 620 6 ALA A 263 O 83.6 89.9 173.1 94.9 99.3 REMARK 620 7 ASP A 265 OD1 139.1 68.0 101.6 137.6 69.4 80.4 REMARK 620 N 1 2 3 4 5 6 DBREF 5AOG A 34 340 UNP P84516 PER1_SORBI 34 340 SEQADV 5AOG ARG A 159 UNP P84516 LYS 159 CONFLICT SEQRES 1 A 307 GLN PRO PRO LEU ALA PRO GLY LEU SER PHE ASP PHE TYR SEQRES 2 A 307 LYS ARG SER CYS PRO LYS ALA GLU SER ILE VAL ARG SER SEQRES 3 A 307 PHE VAL GLN ASP ALA VAL ARG ARG ASP VAL GLY LEU ALA SEQRES 4 A 307 ALA GLY LEU LEU ARG LEU HIS PHE HIS ASP CYS PHE VAL SEQRES 5 A 307 GLN GLY CYS ASP ALA SER VAL LEU LEU ASP GLY SER ALA SEQRES 6 A 307 THR GLY PRO GLY GLU GLN GLN ALA PRO PRO ASN LEU THR SEQRES 7 A 307 LEU ARG PRO THR ALA PHE LYS ALA ILE ASN ASP ILE HIS SEQRES 8 A 307 ASP ARG LEU HIS LYS GLU CYS GLY GLY THR VAL VAL SER SEQRES 9 A 307 CYS SER ASP VAL LEU ALA LEU ALA ALA ARG ASP SER VAL SEQRES 10 A 307 VAL VAL SER GLY GLY PRO SER TYR ARG VAL PRO LEU GLY SEQRES 11 A 307 ARG ARG ASP SER ALA SER PHE ALA THR GLN GLN ASP VAL SEQRES 12 A 307 LEU SER GLY LEU PRO PRO PRO THR ALA ALA VAL PRO ALA SEQRES 13 A 307 LEU LEU ALA VAL LEU SER LYS ILE ASN LEU ASP ALA THR SEQRES 14 A 307 ASP LEU VAL ALA LEU SER GLY GLY HIS THR ILE GLY LEU SEQRES 15 A 307 GLY HIS CYS THR SER PHE GLU ASP ARG LEU PHE PRO ARG SEQRES 16 A 307 PRO ASP PRO THR LEU ASN ALA THR PHE ALA GLY GLN LEU SEQRES 17 A 307 ARG ARG THR CYS PRO ALA LYS GLY THR ASP ARG ARG THR SEQRES 18 A 307 PRO LEU ASP VAL ARG THR PRO ASN ALA PHE ASP ASN LYS SEQRES 19 A 307 TYR TYR VAL ASN LEU VAL ASN ARG GLU GLY LEU PHE THR SEQRES 20 A 307 SER ASP GLN ASP LEU PHE SER ASN ALA ARG THR ARG ALA SEQRES 21 A 307 LEU VAL ASP LYS PHE ALA ARG SER GLN ARG ASP PHE PHE SEQRES 22 A 307 ASP GLN PHE ALA PHE SER VAL VAL LYS MET GLY GLN ILE SEQRES 23 A 307 LYS VAL LEU THR GLY THR GLN GLY GLN ILE ARG THR ASN SEQRES 24 A 307 CYS SER ALA ARG ASN ALA ALA GLY MODRES 5AOG ASN A 234 ASN GLYCOSYLATION SITE MODRES 5AOG ASN A 332 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET FUC B 2 10 HET NAG B 3 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET XYP C 4 9 HET MAN C 5 11 HET FUC C 6 10 HET HEM A1341 43 HET CA A1342 1 HET NA A1343 1 HET GOL A1344 6 HET IAC A1345 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM IAC 1H-INDOL-3-YLACETIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IAC INDOLE ACETIC ACID FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 3 BMA C6 H12 O6 FORMUL 3 XYP C5 H10 O5 FORMUL 3 MAN C6 H12 O6 FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 CA CA 2+ FORMUL 6 NA NA 1+ FORMUL 7 GOL C3 H8 O3 FORMUL 8 IAC C10 H9 N O2 FORMUL 9 HOH *284(H2 O) HELIX 1 1 LYS A 52 ASP A 68 1 17 HELIX 2 2 GLY A 70 VAL A 85 1 16 HELIX 3 3 ALA A 90 LEU A 94 5 5 HELIX 4 4 PRO A 107 THR A 111 5 5 HELIX 5 5 ARG A 113 GLY A 132 1 20 HELIX 6 6 SER A 137 SER A 153 1 17 HELIX 7 7 THR A 172 LEU A 180 1 9 HELIX 8 8 ALA A 186 LYS A 196 1 11 HELIX 9 9 ASP A 200 GLY A 209 1 10 HELIX 10 10 GLY A 210 ILE A 213 5 4 HELIX 11 11 THR A 219 LEU A 225 5 7 HELIX 12 12 ASN A 234 CYS A 245 1 12 HELIX 13 13 ASN A 266 ASN A 274 1 9 HELIX 14 14 PHE A 279 ASN A 288 1 10 HELIX 15 15 THR A 291 SER A 301 1 11 HELIX 16 16 SER A 301 GLY A 317 1 17 SHEET 1 AA 2 LEU A 215 HIS A 217 0 SHEET 2 AA 2 ARG A 253 PRO A 255 -1 O THR A 254 N GLY A 216 SSBOND 1 CYS A 50 CYS A 131 1555 1555 2.11 SSBOND 2 CYS A 83 CYS A 88 1555 1555 2.09 SSBOND 3 CYS A 138 CYS A 333 1555 1555 2.05 SSBOND 4 CYS A 218 CYS A 245 1555 1555 2.06 LINK ND2 ASN A 234 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 332 C1 NAG B 1 1555 1555 1.42 LINK O3 NAG B 1 C1 FUC B 2 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.48 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.41 LINK O2 BMA C 3 C1 XYP C 4 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 5 1555 1555 1.45 LINK O ASP A 82 NA NA A1343 1555 1555 2.52 LINK OD1 ASP A 82 NA NA A1343 1555 1555 2.37 LINK O VAL A 85 NA NA A1343 1555 1555 2.31 LINK O GLY A 87 NA NA A1343 1555 1555 2.38 LINK OD1 ASP A 89 NA NA A1343 1555 1555 2.52 LINK OG SER A 91 NA NA A1343 1555 1555 2.59 LINK NE2 HIS A 211 FE HEM A1341 1555 1555 2.18 LINK O THR A 212 CA CA A1342 1555 1555 2.37 LINK OG1 THR A 212 CA CA A1342 1555 1555 2.45 LINK OD2 ASP A 257 CA CA A1342 1555 1555 2.29 LINK O THR A 260 CA CA A1342 1555 1555 2.39 LINK OG1 THR A 260 CA CA A1342 1555 1555 2.44 LINK O ALA A 263 CA CA A1342 1555 1555 2.38 LINK OD1 ASP A 265 CA CA A1342 1555 1555 2.53 CISPEP 1 PHE A 226 PRO A 227 0 11.28 CRYST1 58.620 58.620 208.410 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017059 0.009849 0.000000 0.00000 SCALE2 0.000000 0.019698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004798 0.00000