HEADER TRANSFERASE 11-SEP-15 5AOQ TITLE STRUCTURAL BASIS OF NEUROHORMONE PERCEPTION BY THE RECEPTOR TYROSINE TITLE 2 KINASE TORSO COMPND MOL_ID: 1; COMPND 2 MOLECULE: TORSO; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 24-287; COMPND 5 SYNONYM: RECEPTOR TYROSINE KINASE TORSO; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PREPROPTTH; COMPND 10 CHAIN: L, M; COMPND 11 FRAGMENT: ACTIVE MATURE FORM, UNP RESIDUES 119-224; COMPND 12 SYNONYM: PROTHORACICOTROPIC HORMONE PTTH; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 12 ORGANISM_COMMON: DOMESTIC SILKWORM; SOURCE 13 ORGANISM_TAXID: 7091; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS TRANSFERASE, PTTH, PROTHORACICOTROPIC HORMONE, METAMORPHOSIS, KEYWDS 2 DEVELOPMENTAL TIMING, NEUROHORMONE, PEPTIDE HORMONE, CYSTINE KNOT, KEYWDS 3 RECEPTOR TYROSINE KINASE, RTK, FIBRONECTIN TYPE III DOMAINS, KEYWDS 4 NEGATIVE COOPERATIVITY EXPDTA X-RAY DIFFRACTION AUTHOR S.JENNI,Y.GOYAL,M.VON GROTTHUSS,S.Y.SHVARTSMAN,D.E.KLEIN REVDAT 5 13-NOV-24 5AOQ 1 HETSYN REVDAT 4 29-JUL-20 5AOQ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-DEC-17 5AOQ 1 JRNL ATOM REVDAT 2 13-JAN-16 5AOQ 1 JRNL REVDAT 1 25-NOV-15 5AOQ 0 JRNL AUTH S.JENNI,Y.GOYAL,M.VON GROTTHUSS,S.Y.SHVARTSMAN,D.E.KLEIN JRNL TITL STRUCTURAL BASIS OF NEUROHORMONE PERCEPTION BY THE RECEPTOR JRNL TITL 2 TYROSINE KINASE TORSO. JRNL REF MOL.CELL V. 60 941 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 26698662 JRNL DOI 10.1016/J.MOLCEL.2015.10.026 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.330 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 32734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.342 REMARK 3 FREE R VALUE : 0.362 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1569 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2176 REMARK 3 BIN R VALUE (WORKING SET) : 0.4387 REMARK 3 BIN FREE R VALUE : 0.4876 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290065002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP, RESOLVE, PHASER, PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5-2.0 M AMMONIUM SULFATE, 100 MM 2 REMARK 280 -(N-MORPHOLINO)ETHANESULFONIC ACID [MES], PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 122.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, M, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 LYS A 134 REMARK 465 PHE A 135 REMARK 465 ASP A 136 REMARK 465 GLN A 137 REMARK 465 ARG A 138 REMARK 465 ASN A 139 REMARK 465 GLN A 140 REMARK 465 GLN A 141 REMARK 465 PRO A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 ILE A 145 REMARK 465 LYS A 146 REMARK 465 GLU A 250 REMARK 465 ILE A 251 REMARK 465 PRO A 252 REMARK 465 GLN A 253 REMARK 465 ASP A 254 REMARK 465 VAL A 255 REMARK 465 ALA A 256 REMARK 465 ILE A 257 REMARK 465 ALA A 258 REMARK 465 ALA A 259 REMARK 465 ASP A 260 REMARK 465 GLN A 261 REMARK 465 ASP A 262 REMARK 465 LEU A 263 REMARK 465 ARG A 264 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 1 REMARK 465 GLU B 2 REMARK 465 VAL B 3 REMARK 465 LYS B 134 REMARK 465 PHE B 135 REMARK 465 ASP B 136 REMARK 465 GLN B 137 REMARK 465 ARG B 138 REMARK 465 ASN B 139 REMARK 465 GLN B 140 REMARK 465 GLN B 141 REMARK 465 PRO B 142 REMARK 465 ASP B 143 REMARK 465 ASP B 144 REMARK 465 ILE B 145 REMARK 465 LYS B 146 REMARK 465 GLU B 250 REMARK 465 ILE B 251 REMARK 465 PRO B 252 REMARK 465 GLN B 253 REMARK 465 ASP B 254 REMARK 465 VAL B 255 REMARK 465 ALA B 256 REMARK 465 ILE B 257 REMARK 465 ALA B 258 REMARK 465 ALA B 259 REMARK 465 ASP B 260 REMARK 465 GLN B 261 REMARK 465 ASP B 262 REMARK 465 LEU B 263 REMARK 465 ARG B 264 REMARK 465 SER L -4 REMARK 465 LEU L -3 REMARK 465 ASP L -2 REMARK 465 GLN L -1 REMARK 465 VAL L 0 REMARK 465 GLU L 1 REMARK 465 ASN L 2 REMARK 465 GLN L 3 REMARK 465 ALA L 4 REMARK 465 ILE L 5 REMARK 465 PRO L 6 REMARK 465 ASP L 7 REMARK 465 PRO L 8 REMARK 465 LYS L 37 REMARK 465 THR L 38 REMARK 465 GLN L 39 REMARK 465 GLN L 40 REMARK 465 LEU L 99 REMARK 465 ARG L 100 REMARK 465 TYR L 101 REMARK 465 ASN L 102 REMARK 465 ASN L 103 REMARK 465 ASN L 104 REMARK 465 SER M -4 REMARK 465 LEU M -3 REMARK 465 ASP M -2 REMARK 465 GLN M -1 REMARK 465 VAL M 0 REMARK 465 GLU M 1 REMARK 465 ASN M 2 REMARK 465 GLN M 3 REMARK 465 GLN M 36 REMARK 465 LYS M 37 REMARK 465 THR M 38 REMARK 465 GLN M 39 REMARK 465 GLN M 40 REMARK 465 PRO M 41 REMARK 465 GLN M 98 REMARK 465 LEU M 99 REMARK 465 ARG M 100 REMARK 465 TYR M 101 REMARK 465 ASN M 102 REMARK 465 ASN M 103 REMARK 465 ASN M 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN L 36 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 71.40 55.32 REMARK 500 LYS A 39 40.45 -101.85 REMARK 500 LYS A 61 6.93 -67.89 REMARK 500 ASN A 84 70.19 56.38 REMARK 500 ASN A 96 -38.68 69.26 REMARK 500 ALA A 106 169.94 62.64 REMARK 500 ASP A 161 -67.90 64.62 REMARK 500 ASN B 31 71.04 54.58 REMARK 500 ASP B 37 20.07 -79.13 REMARK 500 LYS B 61 3.20 -67.80 REMARK 500 ASN B 84 71.54 56.21 REMARK 500 ASN B 96 -37.74 69.86 REMARK 500 ASN B 160 94.90 -160.42 REMARK 500 ASP B 161 -66.45 67.07 REMARK 500 ASP B 178 86.95 56.54 REMARK 500 LEU L 21 14.56 58.60 REMARK 500 ARG L 28 -74.27 -68.55 REMARK 500 THR L 42 -163.88 -129.58 REMARK 500 PRO L 45 161.94 -49.02 REMARK 500 ARG L 62 122.64 -33.62 REMARK 500 GLN L 67 -152.54 53.94 REMARK 500 ASN L 74 104.66 -58.77 REMARK 500 GLU L 75 -73.54 -121.47 REMARK 500 TYR L 97 86.95 58.53 REMARK 500 LEU M 21 14.44 58.21 REMARK 500 ARG M 28 -73.80 -66.49 REMARK 500 PRO M 45 165.91 -48.99 REMARK 500 ARG M 61 -168.72 -107.28 REMARK 500 SER M 66 74.60 56.41 REMARK 500 GLU M 71 110.76 -170.99 REMARK 500 TYR M 78 -48.49 69.09 REMARK 500 TYR M 78 -46.87 69.09 REMARK 500 CYS M 93 56.84 -93.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS L 77 TYR L 78 144.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 5AOQ A 1 264 UNP D2IYS2 D2IYS2_BOMMO 24 287 DBREF 5AOQ B 1 264 UNP D2IYS2 D2IYS2_BOMMO 24 287 DBREF 5AOQ L -1 104 UNP Q17238 Q17238_BOMMO 119 224 DBREF 5AOQ M -1 104 UNP Q17238 Q17238_BOMMO 119 224 SEQADV 5AOQ HIS A -7 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS A -6 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS A -5 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS A -4 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS A -3 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS A -2 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS A -1 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS A 0 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B -7 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B -6 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B -5 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B -4 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B -3 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B -2 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B -1 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ HIS B 0 UNP D2IYS2 EXPRESSION TAG SEQADV 5AOQ SER L -4 UNP Q17238 EXPRESSION TAG SEQADV 5AOQ LEU L -3 UNP Q17238 EXPRESSION TAG SEQADV 5AOQ ASP L -2 UNP Q17238 EXPRESSION TAG SEQADV 5AOQ GLN L 36 UNP Q17238 ASN 156 ENGINEERED MUTATION SEQADV 5AOQ SER M -4 UNP Q17238 EXPRESSION TAG SEQADV 5AOQ LEU M -3 UNP Q17238 EXPRESSION TAG SEQADV 5AOQ ASP M -2 UNP Q17238 EXPRESSION TAG SEQADV 5AOQ GLN M 36 UNP Q17238 ASN 156 ENGINEERED MUTATION SEQRES 1 A 272 HIS HIS HIS HIS HIS HIS HIS HIS GLY GLU VAL VAL SER SEQRES 2 A 272 GLN ARG TYR PRO PRO ALA PRO GLY LEU LEU LYS TYR LEU SEQRES 3 A 272 GLU GLN ASP VAL CYS TYR SER LEU TYR TYR TYR LEU ASN SEQRES 4 A 272 TRP THR SER LEU ALA ASP CYS LYS THR ASN PHE GLU GLU SEQRES 5 A 272 THR GLY ILE SER ASP VAL PRO SER THR VAL LYS VAL ARG SEQRES 6 A 272 CYS GLN SER LYS ASN SER ILE ARG PHE GLU THR GLU PRO SEQRES 7 A 272 SER GLU HIS TRP GLN LEU PHE ILE LEU MET GLU HIS ASP SEQRES 8 A 272 ASN PHE ASP PRO ILE PRO PHE THR LEU ILE GLU PRO ASN SEQRES 9 A 272 ASN VAL PHE GLY GLU LEU ILE THR THR ALA ASN LYS GLU SEQRES 10 A 272 TYR GLN ILE TRP SER THR TYR LEU ASP GLU TYR GLY THR SEQRES 11 A 272 LEU GLN ASP TRP MET GLU GLY PRO ILE VAL LEU LYS PHE SEQRES 12 A 272 ASP GLN ARG ASN GLN GLN PRO ASP ASP ILE LYS TYR ASN SEQRES 13 A 272 VAL THR GLN GLU PHE LYS TYR ILE ILE LEU GLY ASN ASP SEQRES 14 A 272 SER TYR THR ILE ASN GLY LYS PHE VAL TRP ASN THR THR SEQRES 15 A 272 GLY ASP ARG ASP LEU CYS PHE ASP ILE ALA ASN ILE CYS SEQRES 16 A 272 GLN ASN THR ASN MET LYS HIS ALA LYS ILE TRP PRO THR SEQRES 17 A 272 ALA HIS PRO SER PHE ASP VAL GLU ASN LEU VAL LEU ASN SEQRES 18 A 272 ASP GLU CYS GLU ILE HIS VAL LYS GLY ILE HIS GLY THR SEQRES 19 A 272 THR LYS HIS LYS TYR LYS THR PRO SER CYS PHE GLU LEU SEQRES 20 A 272 PRO GLU CYS PHE LEU ASN ASN MET GLU PRO GLU ILE PRO SEQRES 21 A 272 GLN ASP VAL ALA ILE ALA ALA ASP GLN ASP LEU ARG SEQRES 1 B 272 HIS HIS HIS HIS HIS HIS HIS HIS GLY GLU VAL VAL SER SEQRES 2 B 272 GLN ARG TYR PRO PRO ALA PRO GLY LEU LEU LYS TYR LEU SEQRES 3 B 272 GLU GLN ASP VAL CYS TYR SER LEU TYR TYR TYR LEU ASN SEQRES 4 B 272 TRP THR SER LEU ALA ASP CYS LYS THR ASN PHE GLU GLU SEQRES 5 B 272 THR GLY ILE SER ASP VAL PRO SER THR VAL LYS VAL ARG SEQRES 6 B 272 CYS GLN SER LYS ASN SER ILE ARG PHE GLU THR GLU PRO SEQRES 7 B 272 SER GLU HIS TRP GLN LEU PHE ILE LEU MET GLU HIS ASP SEQRES 8 B 272 ASN PHE ASP PRO ILE PRO PHE THR LEU ILE GLU PRO ASN SEQRES 9 B 272 ASN VAL PHE GLY GLU LEU ILE THR THR ALA ASN LYS GLU SEQRES 10 B 272 TYR GLN ILE TRP SER THR TYR LEU ASP GLU TYR GLY THR SEQRES 11 B 272 LEU GLN ASP TRP MET GLU GLY PRO ILE VAL LEU LYS PHE SEQRES 12 B 272 ASP GLN ARG ASN GLN GLN PRO ASP ASP ILE LYS TYR ASN SEQRES 13 B 272 VAL THR GLN GLU PHE LYS TYR ILE ILE LEU GLY ASN ASP SEQRES 14 B 272 SER TYR THR ILE ASN GLY LYS PHE VAL TRP ASN THR THR SEQRES 15 B 272 GLY ASP ARG ASP LEU CYS PHE ASP ILE ALA ASN ILE CYS SEQRES 16 B 272 GLN ASN THR ASN MET LYS HIS ALA LYS ILE TRP PRO THR SEQRES 17 B 272 ALA HIS PRO SER PHE ASP VAL GLU ASN LEU VAL LEU ASN SEQRES 18 B 272 ASP GLU CYS GLU ILE HIS VAL LYS GLY ILE HIS GLY THR SEQRES 19 B 272 THR LYS HIS LYS TYR LYS THR PRO SER CYS PHE GLU LEU SEQRES 20 B 272 PRO GLU CYS PHE LEU ASN ASN MET GLU PRO GLU ILE PRO SEQRES 21 B 272 GLN ASP VAL ALA ILE ALA ALA ASP GLN ASP LEU ARG SEQRES 1 L 109 SER LEU ASP GLN VAL GLU ASN GLN ALA ILE PRO ASP PRO SEQRES 2 L 109 PRO CYS THR CYS LYS TYR LYS LYS GLU ILE GLU ASP LEU SEQRES 3 L 109 GLY GLU ASN SER VAL PRO ARG PHE ILE GLU THR ARG ASN SEQRES 4 L 109 CYS GLN LYS THR GLN GLN PRO THR CYS ARG PRO PRO TYR SEQRES 5 L 109 ILE CYS LYS GLU SER LEU TYR SER ILE THR ILE LEU LYS SEQRES 6 L 109 ARG ARG GLU THR LYS SER GLN GLU SER LEU GLU ILE PRO SEQRES 7 L 109 ASN GLU LEU LYS TYR ARG TRP VAL ALA GLU SER HIS PRO SEQRES 8 L 109 VAL SER VAL ALA CYS LEU CYS THR ARG ASP TYR GLN LEU SEQRES 9 L 109 ARG TYR ASN ASN ASN SEQRES 1 M 109 SER LEU ASP GLN VAL GLU ASN GLN ALA ILE PRO ASP PRO SEQRES 2 M 109 PRO CYS THR CYS LYS TYR LYS LYS GLU ILE GLU ASP LEU SEQRES 3 M 109 GLY GLU ASN SER VAL PRO ARG PHE ILE GLU THR ARG ASN SEQRES 4 M 109 CYS GLN LYS THR GLN GLN PRO THR CYS ARG PRO PRO TYR SEQRES 5 M 109 ILE CYS LYS GLU SER LEU TYR SER ILE THR ILE LEU LYS SEQRES 6 M 109 ARG ARG GLU THR LYS SER GLN GLU SER LEU GLU ILE PRO SEQRES 7 M 109 ASN GLU LEU LYS TYR ARG TRP VAL ALA GLU SER HIS PRO SEQRES 8 M 109 VAL SER VAL ALA CYS LEU CYS THR ARG ASP TYR GLN LEU SEQRES 9 M 109 ARG TYR ASN ASN ASN MODRES 5AOQ ASN A 172 ASN GLYCOSYLATION SITE MODRES 5AOQ ASN B 172 ASN GLYCOSYLATION SITE HET NAG C 1 27 HET NAG C 2 28 HET NAG D 1 27 HET NAG D 2 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 4(C8 H15 N O6) HELIX 1 1 ALA A 11 LYS A 16 1 6 HELIX 2 2 LEU A 18 ASN A 31 1 14 HELIX 3 3 LEU A 239 ASN A 245 1 7 HELIX 4 4 ALA B 11 LYS B 16 1 6 HELIX 5 5 LEU B 18 TYR B 28 1 11 HELIX 6 6 LEU B 35 LYS B 39 5 5 HELIX 7 7 LEU B 239 ASN B 245 1 7 HELIX 8 8 PRO M 73 LYS M 77 5 5 SHEET 1 AA 5 ILE A 47 PRO A 51 0 SHEET 2 AA 5 TRP A 126 VAL A 132 1 O TRP A 126 N SER A 48 SHEET 3 AA 5 TYR A 110 TYR A 116 -1 O TYR A 110 N VAL A 132 SHEET 4 AA 5 GLN A 75 MET A 80 -1 O LEU A 76 N THR A 115 SHEET 5 AA 5 PHE A 90 ILE A 93 -1 O THR A 91 N PHE A 77 SHEET 1 AB 3 LYS A 55 SER A 60 0 SHEET 2 AB 3 SER A 63 GLU A 67 -1 O SER A 63 N SER A 60 SHEET 3 AB 3 PHE A 99 ILE A 103 -1 O GLY A 100 N PHE A 66 SHEET 1 AC 3 GLN A 151 GLY A 159 0 SHEET 2 AC 3 TYR A 163 TRP A 171 -1 O THR A 164 N LEU A 158 SHEET 3 AC 3 SER A 204 LEU A 210 -1 O PHE A 205 N PHE A 169 SHEET 1 AD 4 THR A 190 ILE A 197 0 SHEET 2 AD 4 PHE A 181 CYS A 187 -1 O PHE A 181 N ILE A 197 SHEET 3 AD 4 GLU A 215 GLY A 222 -1 O GLU A 217 N ILE A 186 SHEET 4 AD 4 GLY A 225 LYS A 232 -1 O GLY A 225 N GLY A 222 SHEET 1 BA 5 ILE B 47 PRO B 51 0 SHEET 2 BA 5 TRP B 126 VAL B 132 1 O TRP B 126 N SER B 48 SHEET 3 BA 5 TYR B 110 TYR B 116 -1 O TYR B 110 N VAL B 132 SHEET 4 BA 5 GLN B 75 MET B 80 -1 O LEU B 76 N THR B 115 SHEET 5 BA 5 PHE B 90 ILE B 93 -1 O THR B 91 N PHE B 77 SHEET 1 BB 3 LYS B 55 SER B 60 0 SHEET 2 BB 3 SER B 63 GLU B 67 -1 O SER B 63 N SER B 60 SHEET 3 BB 3 PHE B 99 ILE B 103 -1 O GLY B 100 N PHE B 66 SHEET 1 BC 3 GLN B 151 GLY B 159 0 SHEET 2 BC 3 TYR B 163 TRP B 171 -1 O THR B 164 N LEU B 158 SHEET 3 BC 3 SER B 204 LEU B 210 -1 O PHE B 205 N PHE B 169 SHEET 1 BD 4 THR B 190 ILE B 197 0 SHEET 2 BD 4 PHE B 181 CYS B 187 -1 O PHE B 181 N ILE B 197 SHEET 3 BD 4 GLU B 215 GLY B 222 -1 O GLU B 217 N ILE B 186 SHEET 4 BD 4 GLY B 225 LYS B 232 -1 O GLY B 225 N GLY B 222 SHEET 1 LA 2 LYS L 15 GLU L 19 0 SHEET 2 LA 2 ILE L 30 ASN L 34 -1 O ILE L 30 N GLU L 19 SHEET 1 LB 2 LYS L 50 ARG L 61 0 SHEET 2 LB 2 TRP L 80 LEU L 92 -1 O VAL L 81 N LYS L 60 SHEET 1 MA 2 LYS M 15 GLU M 19 0 SHEET 2 MA 2 ILE M 30 ASN M 34 -1 O ILE M 30 N GLU M 19 SHEET 1 MB 2 LYS M 50 LYS M 60 0 SHEET 2 MB 2 VAL M 81 LEU M 92 -1 O VAL M 81 N LYS M 60 SSBOND 1 CYS A 23 CYS A 38 1555 1555 2.03 SSBOND 2 CYS A 58 CYS A 180 1555 1555 2.03 SSBOND 3 CYS A 187 CYS A 216 1555 1555 2.03 SSBOND 4 CYS A 236 CYS A 242 1555 1555 2.03 SSBOND 5 CYS B 23 CYS B 38 1555 1555 2.03 SSBOND 6 CYS B 58 CYS B 180 1555 1555 2.03 SSBOND 7 CYS B 187 CYS B 216 1555 1555 2.03 SSBOND 8 CYS B 236 CYS B 242 1555 1555 2.03 SSBOND 9 CYS L 10 CYS M 10 1555 1555 2.03 SSBOND 10 CYS L 12 CYS L 49 1555 1555 2.03 SSBOND 11 CYS L 35 CYS L 91 1555 1555 2.03 SSBOND 12 CYS L 43 CYS L 93 1555 1555 2.03 SSBOND 13 CYS M 12 CYS M 49 1555 1555 2.03 SSBOND 14 CYS M 35 CYS M 91 1555 1555 2.03 SSBOND 15 CYS M 43 CYS M 93 1555 1555 2.04 LINK ND2 ASN A 172 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 172 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CISPEP 1 PRO L 45 PRO L 46 0 5.07 CISPEP 2 ASP M 7 PRO M 8 0 -3.73 CISPEP 3 PRO M 45 PRO M 46 0 8.39 CRYST1 53.420 90.960 244.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004094 0.00000 MTRIX1 1 -0.999970 0.006980 0.001690 52.34299 1 MTRIX2 1 -0.006910 -0.999070 0.042530 131.83173 1 MTRIX3 1 0.001980 0.042520 0.999090 -2.03915 1 MTRIX1 2 -0.999060 0.037190 0.022130 47.15434 1 MTRIX2 2 -0.032790 -0.984220 0.173860 108.94835 1 MTRIX3 2 0.028240 0.172980 0.984520 -9.81955 1