HEADER HYDROLASE 18-SEP-15 5AQ0 TITLE THE STRUCTURE OF THE TRANSTHYRETIN-LIKE DOMAIN OF THE FIRST TITLE 2 CATALYTIC DOMAIN OF THE HUMAN CARBOXYPEPTIDASE D CAVEAT 5AQ0 THR A 412 C-BETA WRONG HAND CAVEAT 2 5AQ0 THR B 412 C-BETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSTHYRETIN-LIKE DOMAIN, UNP 383-461; COMPND 5 SYNONYM: METALLOCARBOXYPEPTIDASE D, GP180, METALLOCARBOXYPEPTIDASE COMPND 6 D , GP180, HUMAN CARBOXYPEPTIDASE D, HUMAN CARBOXYPEPTIDASE D; COMPND 7 EC: 3.4.17.22; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYDROLASE, MAN CARBOXYPEPTIDASE D, TTL, TRANSTHYRETIN-LIKE DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR P.GALLEGO,J.GARCIA-PARDO,J.LORENZO,F.X.AVILES,S.VENTURA, D.REVERTER REVDAT 1 28-SEP-16 5AQ0 0 JRNL AUTH P.GALLEGO,J.GARCIA-PARDO,E.BERENGUER,J.LORENZO,F.X.AVILES, JRNL AUTH 2 S.VENTURA,D.REVERTER JRNL TITL THE STRUCTURE OF THE TTLDOMAIN OF THE HUMAN JRNL TITL 2 CARBOXYPEPTIDASE D JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.47 REMARK 3 NUMBER OF REFLECTIONS : 88253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.15392 REMARK 3 R VALUE (WORKING SET) : 0.15282 REMARK 3 FREE R VALUE : 0.17514 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 4610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.949 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.974 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.313 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.324 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1319 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.807 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07 REMARK 3 B22 (A**2) : -0.14 REMARK 3 B33 (A**2) : 0.07 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.51 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1365 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1871 ; 2.364 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 6.376 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;33.183 ;23.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 214 ;13.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 222 ; 0.419 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1035 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 871 ; 2.198 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1436 ; 3.216 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 494 ; 4.860 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 435 ; 6.930 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1365 ; 2.599 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 383 A 461 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4650 0.9434 5.4132 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.0045 REMARK 3 T33: 0.0133 T12: 0.0018 REMARK 3 T13: -0.0014 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4146 L22: 0.3836 REMARK 3 L33: 0.5276 L12: -0.0391 REMARK 3 L13: -0.2205 L23: 0.3387 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.0035 S13: -0.0154 REMARK 3 S21: 0.0096 S22: -0.0218 S23: 0.0316 REMARK 3 S31: 0.0345 S32: -0.0042 S33: 0.0413 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 383 B 461 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0776 0.5729 22.3022 REMARK 3 T TENSOR REMARK 3 T11: 0.0059 T22: 0.0178 REMARK 3 T33: 0.0111 T12: -0.0052 REMARK 3 T13: -0.0018 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.7831 L22: 0.5318 REMARK 3 L33: 0.4187 L12: 0.2078 REMARK 3 L13: -0.5010 L23: -0.0701 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.0408 S13: -0.0011 REMARK 3 S21: 0.0014 S22: 0.0236 S23: -0.0537 REMARK 3 S31: -0.0024 S32: 0.0372 S33: -0.0202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 5AQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-SEP-15. REMARK 100 THE PDBE ID CODE IS EBI-65081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979491 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : CCP4I REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92883 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.95 REMARK 200 RESOLUTION RANGE LOW (A) : 42.73 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.5 REMARK 200 R MERGE (I) : 0.03 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.0 REMARK 200 R MERGE FOR SHELL (I) : 0.46 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.02550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2A HIS A 462 O HOH A 2072 2.19 REMARK 500 CE B LYS B 448 O HOH B 2109 1.90 REMARK 500 NZ B LYS B 448 O HOH B 2109 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 418 CB ASP A 418 CG -0.158 REMARK 500 GLU A 449 CG GLU A 449 CD 0.101 REMARK 500 VAL B 447 CA VAL B 447 C 0.183 REMARK 500 VAL B 447 C VAL B 447 O -0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 415 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 418 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 421 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 HIS B 409 CB - CG - ND1 ANGL. DEV. = 8.0 DEGREES REMARK 500 TYR B 420 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 421 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 THR B 443 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 460 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 460 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 409 97.79 81.07 REMARK 500 HIS B 409 106.40 -162.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 412 -26.0 R S C-BETA WRONG HAND REMARK 500 HIS A 462 24.4 L L OUTSIDE RANGE REMARK 500 THR B 412 -19.4 R S C-BETA WRONG HAND REMARK 500 HIS B 463 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1464 DBREF 5AQ0 A 383 461 UNP O75976 CBPD_HUMAN 383 461 DBREF 5AQ0 B 383 461 UNP O75976 CBPD_HUMAN 383 461 SEQADV 5AQ0 SER A 382 UNP O75976 EXPRESSION TAG SEQADV 5AQ0 HIS A 462 UNP O75976 EXPRESSION TAG SEQADV 5AQ0 HIS A 463 UNP O75976 EXPRESSION TAG SEQADV 5AQ0 SER B 382 UNP O75976 EXPRESSION TAG SEQADV 5AQ0 HIS B 462 UNP O75976 EXPRESSION TAG SEQADV 5AQ0 HIS B 463 UNP O75976 EXPRESSION TAG SEQRES 1 A 82 SER GLY VAL LYS GLY PHE VAL LYS ASP SER ILE THR GLY SEQRES 2 A 82 SER GLY LEU GLU ASN ALA THR ILE SER VAL ALA GLY ILE SEQRES 3 A 82 ASN HIS ASN ILE THR THR GLY ARG PHE GLY ASP PHE TYR SEQRES 4 A 82 ARG LEU LEU VAL PRO GLY THR TYR ASN LEU THR VAL VAL SEQRES 5 A 82 LEU THR GLY TYR MET PRO LEU THR VAL THR ASN VAL VAL SEQRES 6 A 82 VAL LYS GLU GLY PRO ALA THR GLU VAL ASP PHE SER LEU SEQRES 7 A 82 ARG PRO HIS HIS SEQRES 1 B 82 SER GLY VAL LYS GLY PHE VAL LYS ASP SER ILE THR GLY SEQRES 2 B 82 SER GLY LEU GLU ASN ALA THR ILE SER VAL ALA GLY ILE SEQRES 3 B 82 ASN HIS ASN ILE THR THR GLY ARG PHE GLY ASP PHE TYR SEQRES 4 B 82 ARG LEU LEU VAL PRO GLY THR TYR ASN LEU THR VAL VAL SEQRES 5 B 82 LEU THR GLY TYR MET PRO LEU THR VAL THR ASN VAL VAL SEQRES 6 B 82 VAL LYS GLU GLY PRO ALA THR GLU VAL ASP PHE SER LEU SEQRES 7 B 82 ARG PRO HIS HIS HET GOL B1464 12 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *249(H2 O) SHEET 1 AA 2 ASP A 418 LEU A 422 0 SHEET 2 AA 2 GLY A 383 ASP A 390 -1 O VAL A 384 N ARG A 421 SHEET 1 AB 2 THR A 453 GLU A 454 0 SHEET 2 AB 2 GLY A 383 ASP A 390 1 O GLY A 383 N THR A 453 SHEET 1 AC 2 PHE A 457 LEU A 459 0 SHEET 2 AC 2 GLY A 383 ASP A 390 1 O PHE A 387 N PHE A 457 SHEET 1 AD 4 ILE A 411 THR A 412 0 SHEET 2 AD 4 THR A 401 VAL A 404 -1 O ILE A 402 N ILE A 411 SHEET 3 AD 4 GLY A 426 VAL A 433 -1 O THR A 431 N SER A 403 SHEET 4 AD 4 LEU A 440 VAL A 447 -1 O LEU A 440 N VAL A 432 SHEET 1 BA 2 ASP B 418 LEU B 422 0 SHEET 2 BA 2 GLY B 383 ASP B 390 -1 O VAL B 384 N ARG B 421 SHEET 1 BB 2 THR B 453 GLU B 454 0 SHEET 2 BB 2 GLY B 383 ASP B 390 1 O GLY B 383 N THR B 453 SHEET 1 BC 2 PHE B 457 LEU B 459 0 SHEET 2 BC 2 GLY B 383 ASP B 390 1 O PHE B 387 N PHE B 457 SHEET 1 BD 4 ILE B 407 THR B 412 0 SHEET 2 BD 4 THR B 401 VAL B 404 -1 O ILE B 402 N ILE B 411 SHEET 3 BD 4 GLY B 426 VAL B 433 -1 O THR B 431 N SER B 403 SHEET 4 BD 4 LEU B 440 VAL B 447 -1 O LEU B 440 N VAL B 432 SITE 1 AC1 10 PHE A 419 HOH A2009 HOH A2010 HOH A2051 SITE 2 AC1 10 HOH A2053 LEU B 434 GLY B 436 TYR B 437 SITE 3 AC1 10 GLU B 449 HIS B 462 CRYST1 39.773 46.051 42.730 90.00 90.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025143 0.000000 0.000079 0.00000 SCALE2 0.000000 0.021715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023403 0.00000