HEADER METAL BINDING PROTEIN 21-SEP-15 5AQ6 TITLE STRUCTURE OF E. COLI ZINT AT 1.79 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL-BINDING PROTEIN ZINT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-216; COMPND 5 SYNONYM: CADMIUM-INDUCED PROTEIN ZINT, ZINT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 VARIANT: ROSETTA KEYWDS METAL BINDING PROTEIN, ZINC TRANSPORT, NATURAL HIS-TAG, METAL KEYWDS 2 RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR P.E.SANTO,H.G.COLACO,P.MATIAS,J.B.VICENTE,T.M.BANDEIRAS REVDAT 3 23-OCT-19 5AQ6 1 REMARK ATOM REVDAT 2 30-MAR-16 5AQ6 1 JRNL REVDAT 1 27-JAN-16 5AQ6 0 JRNL AUTH H.G.COLACO,P.E.SANTO,P.MATIAS,T.M.BANDEIRAS,J.B.VICENTE JRNL TITL ROLES OF ESCHERICHIA COLI ZINT IN COBALT, MERCURY AND JRNL TITL 2 CADMIUM RESISTANCE AND STRUCTURAL INSIGHTS INTO THE METAL JRNL TITL 3 BINDING MECHANISM JRNL REF METALLOMICS V. 8 327 2016 JRNL REFN ISSN 1756-5901 JRNL PMID 26758285 JRNL DOI 10.1039/C5MT00291E REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.840 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7713 - 3.8559 1.00 2920 144 0.1679 0.1869 REMARK 3 2 3.8559 - 3.0607 1.00 2762 148 0.1575 0.1989 REMARK 3 3 3.0607 - 2.6739 1.00 2703 150 0.1700 0.1829 REMARK 3 4 2.6739 - 2.4294 1.00 2684 144 0.1661 0.2103 REMARK 3 5 2.4294 - 2.2553 1.00 2673 152 0.1728 0.2245 REMARK 3 6 2.2553 - 2.1223 1.00 2652 152 0.1839 0.2309 REMARK 3 7 2.1223 - 2.0160 1.00 2649 136 0.1842 0.2193 REMARK 3 8 2.0160 - 1.9283 1.00 2633 131 0.1948 0.2450 REMARK 3 9 1.9283 - 1.8540 1.00 2649 135 0.2359 0.2560 REMARK 3 10 1.8540 - 1.7901 0.97 2536 141 0.2679 0.3262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1642 REMARK 3 ANGLE : 1.318 2227 REMARK 3 CHIRALITY : 0.051 222 REMARK 3 PLANARITY : 0.006 292 REMARK 3 DIHEDRAL : 15.056 604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9463 16.2579 22.0887 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.2248 REMARK 3 T33: 0.1880 T12: 0.0494 REMARK 3 T13: -0.0031 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.0348 L22: 0.7668 REMARK 3 L33: 0.4422 L12: -0.2394 REMARK 3 L13: 0.0997 L23: 0.0106 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 0.3023 S13: -0.1362 REMARK 3 S21: -0.1114 S22: -0.1836 S23: -0.0476 REMARK 3 S31: 0.2344 S32: 0.1932 S33: -0.0420 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.4552 20.3184 40.7578 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.5428 REMARK 3 T33: 0.2137 T12: -0.0944 REMARK 3 T13: -0.0988 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 1.5322 L22: 1.7185 REMARK 3 L33: 0.8088 L12: 0.1597 REMARK 3 L13: 0.2093 L23: -0.4845 REMARK 3 S TENSOR REMARK 3 S11: 0.1366 S12: -0.0074 S13: 0.0929 REMARK 3 S21: 0.4002 S22: -0.3471 S23: -0.1865 REMARK 3 S31: -0.4807 S32: 0.8713 S33: -0.1330 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.7385 26.0317 37.5371 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.2671 REMARK 3 T33: 0.2010 T12: -0.1074 REMARK 3 T13: -0.0541 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.6274 L22: 0.7434 REMARK 3 L33: 0.9956 L12: -0.2438 REMARK 3 L13: -0.4731 L23: -0.2033 REMARK 3 S TENSOR REMARK 3 S11: -0.1156 S12: -0.1314 S13: 0.1802 REMARK 3 S21: 0.1544 S22: -0.0214 S23: 0.0718 REMARK 3 S31: -0.4815 S32: 0.3350 S33: -0.1397 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5418 29.8828 37.4893 REMARK 3 T TENSOR REMARK 3 T11: 0.3731 T22: 0.2185 REMARK 3 T33: 0.2802 T12: 0.0771 REMARK 3 T13: -0.0001 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.1293 L22: 0.2380 REMARK 3 L33: 0.4734 L12: -0.1843 REMARK 3 L13: 0.0040 L23: 0.1125 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: -0.3918 S13: 0.0843 REMARK 3 S21: 0.3271 S22: 0.2086 S23: -0.0216 REMARK 3 S31: -0.4777 S32: -0.4951 S33: 0.0043 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1569 30.9298 22.7840 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.2751 REMARK 3 T33: 0.2520 T12: -0.0045 REMARK 3 T13: 0.0157 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 0.1989 L22: 0.5943 REMARK 3 L33: 0.6406 L12: -0.3296 REMARK 3 L13: -0.0413 L23: 0.1669 REMARK 3 S TENSOR REMARK 3 S11: 0.1784 S12: 0.2400 S13: 0.1302 REMARK 3 S21: -0.1136 S22: -0.3092 S23: -0.0456 REMARK 3 S31: -0.6203 S32: 0.2056 S33: -0.1159 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6345 22.9003 30.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.2013 T22: 0.1926 REMARK 3 T33: 0.2005 T12: -0.0569 REMARK 3 T13: -0.0155 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.7488 L22: 0.4536 REMARK 3 L33: 1.3965 L12: -0.7616 REMARK 3 L13: 0.4091 L23: 0.2238 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: 0.1002 S13: 0.1080 REMARK 3 S21: -0.0344 S22: -0.1150 S23: -0.1564 REMARK 3 S31: -0.1108 S32: 0.3994 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE CLOSE CONTACTS BETWEEN THE ATOMS REMARK 3 ZN1, ZN2, ZN3, ZN4, ZN6 AND ZN8 AND THE RESPECTIVE SIDE CHAINS REMARK 3 ARE DUE TO COORDINATION DISTANCES. REMARK 4 REMARK 4 5AQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS PROGRAM PACKAGE REMARK 200 DATA SCALING SOFTWARE : XDS PROGRAM PACKAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75 MM ZINC ACETATE 18 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.86000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.00500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.43000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.00500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.29000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.00500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.43000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.00500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.29000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.86000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -387.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 62.01000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 62.01000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.86000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 116 CD CE NZ REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 1197 OXT ACY A 1201 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 88 145.09 -170.73 REMARK 500 ASN A 97 -115.77 50.38 REMARK 500 ASP A 143 27.36 -152.64 REMARK 500 ARG A 149 134.54 -177.41 REMARK 500 ASP A 161 -65.00 -91.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1194 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 NE2 REMARK 620 2 HIS A 6 NE2 112.5 REMARK 620 3 GLU A 189 OE1 117.5 109.0 REMARK 620 4 HIS A 193 NE2 111.5 116.7 87.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1195 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 HIS A 153 NE2 111.0 REMARK 620 3 HIS A 144 NE2 110.9 109.7 REMARK 620 4 HOH A2137 O 106.7 110.2 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1196 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD2 REMARK 620 2 HIS A 95 ND1 102.6 REMARK 620 3 HOH A2180 O 150.4 104.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1196 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 88 OE1 REMARK 620 2 GLU A 88 OE2 54.6 REMARK 620 3 HOH A2097 O 93.6 82.7 REMARK 620 4 GLU A 93 OE1 129.2 74.7 81.9 REMARK 620 5 HIS A 95 NE2 87.6 141.7 108.0 142.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1197 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 24 OD2 REMARK 620 2 HIS A 75 NE2 125.0 REMARK 620 3 HOH A2085 O 107.9 104.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1198 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 93 OE1 REMARK 620 2 HOH A2179 O 99.2 REMARK 620 3 HOH A2095 O 68.1 158.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD1 REMARK 620 2 HOH A2180 O 111.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1201 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE NUMBERED CONSIDERING MATURE PROTEIN. THE REMARK 999 DEPOSITED PDB LACKS GLY2-HIS3-HIS4. DBREF 5AQ6 A 1 193 UNP P76344 ZINT_ECOLI 24 216 SEQADV 5AQ6 LYS A 31 UNP P76344 THR 54 CONFLICT SEQRES 1 A 193 HIS GLY HIS HIS SER HIS GLY LYS PRO LEU THR GLU VAL SEQRES 2 A 193 GLU GLN LYS ALA ALA ASN GLY VAL PHE ASP ASP ALA ASN SEQRES 3 A 193 VAL GLN ASN ARG LYS LEU SER ASP TRP ASP GLY VAL TRP SEQRES 4 A 193 GLN SER VAL TYR PRO LEU LEU GLN SER GLY LYS LEU ASP SEQRES 5 A 193 PRO VAL PHE GLN LYS LYS ALA ASP ALA ASP LYS THR LYS SEQRES 6 A 193 THR PHE ALA GLU ILE LYS ASP TYR TYR HIS LYS GLY TYR SEQRES 7 A 193 ALA THR ASP ILE GLU MET ILE GLY ILE GLU ASP GLY ILE SEQRES 8 A 193 VAL GLU PHE HIS ARG ASN ASN GLU THR THR SER CYS LYS SEQRES 9 A 193 TYR ASP TYR ASP GLY TYR LYS ILE LEU THR TYR LYS SER SEQRES 10 A 193 GLY LYS LYS GLY VAL ARG TYR LEU PHE GLU CYS LYS ASP SEQRES 11 A 193 PRO GLU SER LYS ALA PRO LYS TYR ILE GLN PHE SER ASP SEQRES 12 A 193 HIS ILE ILE ALA PRO ARG LYS SER SER HIS PHE HIS ILE SEQRES 13 A 193 PHE MET GLY ASN ASP SER GLN GLN SER LEU LEU ASN GLU SEQRES 14 A 193 MET GLU ASN TRP PRO THR TYR TYR PRO TYR GLN LEU SER SEQRES 15 A 193 SER GLU GLU VAL VAL GLU GLU MET MET SER HIS HET ZN A1193 1 HET ZN A1194 1 HET ZN A1195 1 HET ZN A1196 2 HET ZN A1197 1 HET ZN A1198 1 HET ZN A1199 1 HET ZN A1200 1 HET ACY A1201 7 HETNAM ZN ZINC ION HETNAM ACY ACETIC ACID FORMUL 2 ZN 8(ZN 2+) FORMUL 10 ACY C2 H4 O2 FORMUL 11 HOH *179(H2 O) HELIX 1 1 THR A 11 ASN A 19 1 9 HELIX 2 2 ASP A 23 VAL A 27 5 5 HELIX 3 3 LYS A 31 ASP A 36 5 6 HELIX 4 4 VAL A 42 SER A 48 1 7 HELIX 5 5 LEU A 51 ALA A 61 1 11 HELIX 6 6 THR A 66 ALA A 79 1 14 HELIX 7 7 SER A 162 GLU A 169 1 8 HELIX 8 8 SER A 182 HIS A 193 1 12 SHEET 1 AA 9 GLU A 99 LYS A 104 0 SHEET 2 AA 9 ILE A 91 ARG A 96 -1 O VAL A 92 N CYS A 103 SHEET 3 AA 9 MET A 84 GLU A 88 -1 O MET A 84 N HIS A 95 SHEET 4 AA 9 GLY A 37 SER A 41 -1 O GLY A 37 N ILE A 87 SHEET 5 AA 9 THR A 175 PRO A 178 -1 O TYR A 177 N GLN A 40 SHEET 6 AA 9 PHE A 154 GLY A 159 -1 O PHE A 154 N TYR A 176 SHEET 7 AA 9 TYR A 138 SER A 142 -1 O TYR A 138 N GLY A 159 SHEET 8 AA 9 LYS A 120 GLU A 127 -1 O TYR A 124 N PHE A 141 SHEET 9 AA 9 ASP A 106 THR A 114 -1 O ASP A 106 N GLU A 127 SSBOND 1 CYS A 103 CYS A 128 1555 1555 2.03 LINK ZN ZN A1194 NE2 HIS A 1 1555 1555 1.91 LINK ZN ZN A1194 NE2 HIS A 6 1555 1555 2.05 LINK ZN ZN A1194 OE1 GLU A 189 1555 1555 2.02 LINK ZN ZN A1194 NE2 HIS A 193 1555 1555 1.87 LINK ZN ZN A1195 NE2 HIS A 155 1555 1555 1.96 LINK ZN ZN A1195 NE2 HIS A 153 1555 1555 2.07 LINK ZN ZN A1195 NE2 HIS A 144 1555 1555 2.04 LINK ZN ZN A1195 O HOH A2137 1555 1555 2.14 LINK ZN A ZN A1196 OD2 ASP A 89 1555 8665 2.63 LINK ZN A ZN A1196 ND1AHIS A 95 1555 1555 2.15 LINK ZN A ZN A1196 O HOH A2180 1555 8665 2.02 LINK ZN B ZN A1196 OE1BGLU A 88 1555 8665 2.03 LINK ZN B ZN A1196 OE2BGLU A 88 1555 8665 2.63 LINK ZN B ZN A1196 O HOH A2097 1555 1555 2.13 LINK ZN B ZN A1196 OE1 GLU A 93 1555 1555 2.01 LINK ZN B ZN A1196 NE2BHIS A 95 1555 1555 1.95 LINK ZN ZN A1197 OD2 ASP A 24 1555 3645 1.98 LINK ZN ZN A1197 NE2 HIS A 75 1555 1555 2.07 LINK ZN ZN A1197 O HOH A2085 1555 1555 2.20 LINK ZN ZN A1198 OE1 GLU A 93 1555 8665 2.53 LINK ZN ZN A1198 O HOH A2179 1555 1555 2.50 LINK ZN ZN A1198 O HOH A2095 1555 1555 2.34 LINK ZN ZN A1199 OE2 GLU A 188 1555 1555 1.81 LINK ZN ZN A1200 OD1 ASP A 89 1555 1555 2.17 LINK ZN ZN A1200 O HOH A2180 1555 1555 2.39 SITE 1 AC1 1 GLU A 188 SITE 1 AC2 4 HIS A 1 HIS A 6 GLU A 189 HIS A 193 SITE 1 AC3 4 HIS A 144 HIS A 153 HIS A 155 HOH A2137 SITE 1 AC4 4 ASP A 89 HIS A 95 ZN A1200 HOH A2180 SITE 1 AC5 4 ASP A 24 HIS A 75 ACY A1201 HOH A2085 SITE 1 AC6 5 GLU A 88 GLU A 93 HOH A2095 HOH A2097 SITE 2 AC6 5 HOH A2179 SITE 1 AC7 1 GLU A 188 SITE 1 AC8 3 ASP A 89 ZN A1196 HOH A2180 SITE 1 AC9 6 ASP A 24 TYR A 43 GLN A 47 HIS A 75 SITE 2 AC9 6 ZN A1197 HOH A2085 CRYST1 62.010 62.010 149.720 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006679 0.00000