HEADER CHAPERONE 21-SEP-15 5AQB TITLE DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY AS TITLE 2 A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY CAVEAT 5AQB CRO B 66 HAS WRONG CHIRALITY AT ATOM CB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3G61_DB15V4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: XL1-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 12 ORGANISM_TAXID: 6100; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: XL1-BLUE; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS CHAPERONE, CRYSTALLIZATION CHAPERONE, DESIGNED ANKYRIN REPEAT PROTEIN KEYWDS 2 (DARPIN), RIGID DOMAIN FUSION EXPDTA X-RAY DIFFRACTION AUTHOR A.BATYUK,Y.WU,A.HONEGGER,M.HEBERLING,A.PLUECKTHUN REVDAT 6 10-JAN-24 5AQB 1 REMARK REVDAT 5 15-NOV-23 5AQB 1 CAVEAT ATOM REVDAT 4 23-OCT-19 5AQB 1 SEQADV LINK ATOM REVDAT 3 18-MAY-16 5AQB 1 JRNL REVDAT 2 06-APR-16 5AQB 1 JRNL REVDAT 1 23-MAR-16 5AQB 0 JRNL AUTH A.BATYUK,Y.WU,A.HONEGGER,M.HEBERLING,A.PLUECKTHUN JRNL TITL DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR JRNL TITL 2 GEOMETRY AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY JRNL REF J.MOL.BIOL. V. 428 1574 2016 JRNL REFN ISSN 0022-2836 JRNL PMID 26975886 JRNL DOI 10.1016/J.JMB.2016.03.002 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 143449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1146 - 4.2558 1.00 4683 247 0.1473 0.1761 REMARK 3 2 4.2558 - 3.3783 1.00 4625 243 0.1365 0.1472 REMARK 3 3 3.3783 - 2.9513 1.00 4578 241 0.1451 0.1662 REMARK 3 4 2.9513 - 2.6815 1.00 4609 243 0.1465 0.1606 REMARK 3 5 2.6815 - 2.4893 1.00 4603 242 0.1378 0.1656 REMARK 3 6 2.4893 - 2.3425 1.00 4578 241 0.1384 0.1476 REMARK 3 7 2.3425 - 2.2252 1.00 4555 240 0.1375 0.1679 REMARK 3 8 2.2252 - 2.1284 1.00 4575 241 0.1432 0.1779 REMARK 3 9 2.1284 - 2.0464 1.00 4571 240 0.1429 0.1606 REMARK 3 10 2.0464 - 1.9758 1.00 4607 243 0.1444 0.1712 REMARK 3 11 1.9758 - 1.9140 1.00 4611 243 0.1435 0.1550 REMARK 3 12 1.9140 - 1.8593 1.00 4569 239 0.1506 0.1850 REMARK 3 13 1.8593 - 1.8104 1.00 4527 238 0.1554 0.1716 REMARK 3 14 1.8104 - 1.7662 1.00 4616 243 0.1606 0.1725 REMARK 3 15 1.7662 - 1.7260 1.00 4538 239 0.1617 0.1821 REMARK 3 16 1.7260 - 1.6893 1.00 4531 239 0.1693 0.1902 REMARK 3 17 1.6893 - 1.6555 1.00 4607 242 0.1739 0.1895 REMARK 3 18 1.6555 - 1.6243 1.00 4611 243 0.1723 0.1931 REMARK 3 19 1.6243 - 1.5953 1.00 4538 239 0.1853 0.2064 REMARK 3 20 1.5953 - 1.5682 1.00 4582 241 0.1974 0.1897 REMARK 3 21 1.5682 - 1.5429 1.00 4596 242 0.2070 0.2322 REMARK 3 22 1.5429 - 1.5192 1.00 4538 239 0.2211 0.2779 REMARK 3 23 1.5192 - 1.4968 1.00 4529 238 0.2311 0.2549 REMARK 3 24 1.4968 - 1.4757 1.00 4612 243 0.2612 0.2463 REMARK 3 25 1.4757 - 1.4558 1.00 4585 242 0.2744 0.2678 REMARK 3 26 1.4558 - 1.4369 1.00 4523 238 0.3175 0.3190 REMARK 3 27 1.4369 - 1.4189 1.00 4637 244 0.3302 0.3466 REMARK 3 28 1.4189 - 1.4018 0.99 4463 235 0.3715 0.3946 REMARK 3 29 1.4018 - 1.3855 0.94 4304 226 0.4001 0.4403 REMARK 3 30 1.3855 - 1.3700 0.83 3770 204 0.4216 0.4427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5294 REMARK 3 ANGLE : 0.985 7239 REMARK 3 CHIRALITY : 0.078 826 REMARK 3 PLANARITY : 0.007 952 REMARK 3 DIHEDRAL : 13.088 2021 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7790 124.5929 3.0257 REMARK 3 T TENSOR REMARK 3 T11: 0.9042 T22: 0.3470 REMARK 3 T33: 0.4158 T12: 0.1218 REMARK 3 T13: -0.2534 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.5892 L22: 6.6383 REMARK 3 L33: 0.2621 L12: 2.8820 REMARK 3 L13: 0.3763 L23: 1.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.5384 S12: 0.1087 S13: 0.5871 REMARK 3 S21: 0.0888 S22: 0.0063 S23: 0.3514 REMARK 3 S31: -1.3064 S32: -0.1268 S33: -0.0722 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5476 104.6579 11.9341 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.2264 REMARK 3 T33: 0.2324 T12: 0.0248 REMARK 3 T13: -0.0560 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.9252 L22: 1.1013 REMARK 3 L33: 3.4430 L12: -1.3080 REMARK 3 L13: 1.3692 L23: -2.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.0133 S13: -0.0354 REMARK 3 S21: -0.0295 S22: -0.0813 S23: -0.0697 REMARK 3 S31: -0.0480 S32: 0.0696 S33: 0.0292 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7705 78.3684 34.1749 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.1536 REMARK 3 T33: 0.1671 T12: -0.0082 REMARK 3 T13: 0.0107 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.9372 L22: 1.1796 REMARK 3 L33: 0.9843 L12: -0.1825 REMARK 3 L13: 0.3719 L23: -0.0922 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0369 S13: -0.0248 REMARK 3 S21: 0.0089 S22: -0.0096 S23: 0.0330 REMARK 3 S31: -0.0132 S32: -0.0387 S33: 0.0300 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2102 102.9367 -23.6286 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.1974 REMARK 3 T33: 0.1714 T12: 0.0455 REMARK 3 T13: 0.0104 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.3431 L22: 1.2319 REMARK 3 L33: 2.0755 L12: 0.1901 REMARK 3 L13: 0.4104 L23: 0.0237 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: 0.1472 S13: -0.0040 REMARK 3 S21: -0.0833 S22: -0.0093 S23: -0.0875 REMARK 3 S31: 0.0096 S32: 0.1607 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5428 100.6355 -12.8791 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1614 REMARK 3 T33: 0.1555 T12: 0.0563 REMARK 3 T13: -0.0065 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.5816 L22: 1.0983 REMARK 3 L33: 1.7928 L12: 0.3014 REMARK 3 L13: 0.4263 L23: 0.0284 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: 0.0010 S13: -0.0577 REMARK 3 S21: 0.0166 S22: -0.0162 S23: -0.1400 REMARK 3 S31: 0.1204 S32: 0.1561 S33: 0.0049 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 188 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3525 108.8703 -17.0378 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.2397 REMARK 3 T33: 0.2079 T12: 0.0205 REMARK 3 T13: -0.0008 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.7432 L22: 0.5544 REMARK 3 L33: 1.0161 L12: 0.0679 REMARK 3 L13: 0.6947 L23: 0.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.1389 S13: 0.0821 REMARK 3 S21: -0.0467 S22: 0.0267 S23: -0.0946 REMARK 3 S31: -0.1010 S32: 0.2427 S33: -0.0167 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : RH COATED MERIDIONALLY FOCUSSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 48.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.090 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3DTM, 1SVX CHAIN A AND 1GFL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 20.0% W/V, SODIUM FORMATE 0.2 REMARK 280 M, BIS TRIS PROPANE 0.1 M, PH 8, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.07500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.07500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2093 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 LYS A 17 REMARK 465 ALA A 35 REMARK 465 ASN A 36 REMARK 465 GLY A 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C PHE B 64 H2 CRO B 66 1.51 REMARK 500 HZ3 LYS A 286 O HOH A 2315 1.51 REMARK 500 HH12 ARG A 149 O HOH A 2163 1.59 REMARK 500 O HOH A 2388 O HOH A 2391 1.94 REMARK 500 OD1 ASP B 102 O HOH B 2141 1.96 REMARK 500 O HOH A 2383 O HOH A 2384 1.98 REMARK 500 O HOH A 2100 O HOH A 2135 1.98 REMARK 500 OD1 ASP B 190 O HOH B 2226 2.00 REMARK 500 O HOH A 2111 O HOH A 2337 2.01 REMARK 500 OE2 GLU B 32 O HOH B 2048 2.02 REMARK 500 O HOH A 2002 O HOH A 2015 2.03 REMARK 500 O HOH A 2132 O HOH A 2133 2.06 REMARK 500 O HOH A 2091 O HOH A 2261 2.06 REMARK 500 O HOH A 2174 O HOH A 2405 2.08 REMARK 500 O HOH A 2064 O HOH A 2224 2.09 REMARK 500 O HOH A 2434 O HOH A 2435 2.11 REMARK 500 OE1 GLN A 228 O HOH A 2259 2.13 REMARK 500 O HOH A 2246 O HOH A 2247 2.15 REMARK 500 O HOH B 2253 O HOH B 2258 2.16 REMARK 500 OD1 ASN A 294 O HOH A 2319 2.17 REMARK 500 OD1 ASP B 36 O HOH B 2011 2.18 REMARK 500 O ILE A 267 O HOH A 2301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2141 O HOH B 2073 1656 2.09 REMARK 500 O HOH A 2323 O HOH A 2323 2756 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 21 7.45 -69.75 REMARK 500 ARG A 23 -68.67 -92.58 REMARK 500 ALA A 24 72.43 42.94 REMARK 500 ASP A 44 -167.88 -114.10 REMARK 500 TRP A 56 39.72 -81.24 REMARK 500 MET A 209 -149.87 55.34 REMARK 500 TYR A 245 71.17 56.44 REMARK 500 LEU A 360 -123.14 -100.57 REMARK 500 THR B 230 -151.40 -91.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2115 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2129 DISTANCE = 6.17 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 11-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 12-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AQ7 RELATED DB: PDB REMARK 900 DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY REMARK 900 AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY REMARK 900 RELATED ID: 5AQ8 RELATED DB: PDB REMARK 900 DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY REMARK 900 AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY REMARK 900 RELATED ID: 5AQ9 RELATED DB: PDB REMARK 900 DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY REMARK 900 AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY REMARK 900 RELATED ID: 5AQA RELATED DB: PDB REMARK 900 DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY REMARK 900 AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY DBREF 5AQB A 1 428 PDB 5AQB 5AQB 1 428 DBREF 5AQB B 2 231 UNP P42212 GFP_AEQVI 2 231 SEQADV 5AQB SER B 1 UNP P42212 EXPRESSION TAG SEQADV 5AQB ARG B 80 UNP P42212 GLN 80 CONFLICT SEQADV 5AQB CRO B 66 UNP P42212 THR 65 CHROMOPHORE SEQADV 5AQB CRO B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 5AQB CRO B 66 UNP P42212 GLY 67 CHROMOPHORE SEQRES 1 A 428 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 A 428 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 A 428 ASP ASP GLU CYS ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 A 428 VAL ASN ALA LEU ASP GLU VAL GLY TRP THR PRO LEU HIS SEQRES 5 A 428 LEU ALA ALA TRP GLY HIS LEU GLU ILE VAL GLU CYS LEU SEQRES 6 A 428 LEU LYS ASN GLY ALA ASP VAL ASN ALA ALA ASP ILE ASP SEQRES 7 A 428 GLY TYR THR PRO LEU HIS LEU ALA ALA PHE SER GLY HIS SEQRES 8 A 428 LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP SEQRES 9 A 428 VAL ASN ALA ASP ASP GLN ALA GLY PHE THR PRO LEU HIS SEQRES 10 A 428 LEU ALA ALA ILE PHE GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 11 A 428 LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA GLN ASP LYS SEQRES 12 A 428 PHE GLY LYS THR PRO ARG ASP LEU ALA ILE ASP ASN GLY SEQRES 13 A 428 ASN GLU ASP ILE ALA GLU VAL LEU GLY LYS ALA ALA THR SEQRES 14 A 428 LEU VAL LYS VAL LYS ASP ALA ALA ASP GLN LEU GLY ALA SEQRES 15 A 428 ARG VAL GLY TYR ILE GLU LEU ASP LEU ASN SER GLY LYS SEQRES 16 A 428 ILE LEU GLU SER PHE ARG SER GLU GLU ARG PHE PRO MET SEQRES 17 A 428 MET SER THR PHE LYS VAL LEU LEU ALA GLY ALA ILE LEU SEQRES 18 A 428 SER ARG ILE ASP ALA GLY GLN GLU GLN LEU GLY ARG ARG SEQRES 19 A 428 ILE HIS TYR SER GLN ASN ASP LEU VAL GLU TYR SER PRO SEQRES 20 A 428 VAL THR GLU LYS HIS LEU THR ASP GLY MET THR VAL ARG SEQRES 21 A 428 GLU LEU ALA SER ALA ALA ILE THR MET SER ASP ASN THR SEQRES 22 A 428 ALA ALA ASN LEU LEU LEU THR THR ILE GLY GLY PRO LYS SEQRES 23 A 428 GLY LEU THR ALA PHE LEU HIS ASN MET GLY ASP HIS VAL SEQRES 24 A 428 THR ARG LEU ASP ARG TRP GLU PRO GLU LEU ASN GLU ALA SEQRES 25 A 428 ILE PRO ASN ASP GLU ARG ASP THR THR THR PRO VAL ALA SEQRES 26 A 428 MET ALA THR THR LEU ARG LYS LEU LEU THR GLY GLU LEU SEQRES 27 A 428 LEU THR PRO ALA SER ARG GLN GLN LEU MET ASP TRP MET SEQRES 28 A 428 GLU ALA ASP LYS VAL ALA GLY PRO LEU LEU ARG SER VAL SEQRES 29 A 428 LEU PRO ALA GLY TRP PHE ILE ALA ASP LYS SER GLY ALA SEQRES 30 A 428 GLY GLU ARG GLY SER ARG GLY ILE VAL ALA ALA LEU GLY SEQRES 31 A 428 PRO ASP GLY LYS PRO SER ARG ILE VAL VAL ILE TYR THR SEQRES 32 A 428 THR GLY SER GLN ALA THR MET ASP GLU LEU ASN ARG GLN SEQRES 33 A 428 ILE ALA GLU ILE GLY ALA SER LEU ILE LYS GLY TRP SEQRES 1 B 229 SER SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 B 229 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 B 229 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 B 229 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 B 229 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 B 229 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 B 229 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 B 229 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 B 229 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 B 229 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 B 229 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 B 229 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 B 229 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 B 229 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 B 229 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 B 229 ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS ASP SEQRES 17 B 229 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 B 229 VAL THR ALA ALA GLY ILE THR HIS MODRES 5AQB CRO B 66 THR MODRES 5AQB CRO B 66 TYR MODRES 5AQB CRO B 66 GLY HET CRO B 66 37 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 2 CRO C15 H17 N3 O5 FORMUL 3 HOH *717(H2 O) HELIX 1 1 LEU A 19 ARG A 23 5 5 HELIX 2 2 GLN A 26 MET A 34 1 9 HELIX 3 3 THR A 49 ALA A 55 1 7 HELIX 4 4 HIS A 58 ASN A 68 1 11 HELIX 5 5 THR A 81 GLY A 90 1 10 HELIX 6 6 HIS A 91 TYR A 101 1 11 HELIX 7 7 THR A 114 GLY A 123 1 10 HELIX 8 8 HIS A 124 ASN A 134 1 11 HELIX 9 9 THR A 147 ASN A 155 1 9 HELIX 10 10 ASN A 157 GLY A 181 1 25 HELIX 11 11 THR A 211 ALA A 226 1 16 HELIX 12 12 SER A 238 LEU A 242 5 5 HELIX 13 13 VAL A 248 HIS A 252 5 5 HELIX 14 14 VAL A 259 MET A 269 1 11 HELIX 15 15 ASP A 271 ILE A 282 1 12 HELIX 16 16 GLY A 283 MET A 295 1 13 HELIX 17 17 PRO A 307 GLU A 311 5 5 HELIX 18 18 THR A 322 GLY A 336 1 15 HELIX 19 19 THR A 340 ALA A 353 1 14 HELIX 20 20 LEU A 360 LEU A 365 5 6 HELIX 21 21 THR A 409 GLY A 427 1 19 HELIX 22 22 LYS B 3 THR B 9 5 7 HELIX 23 23 ALA B 37 TYR B 39 5 3 HELIX 24 24 PRO B 56 VAL B 61 5 6 HELIX 25 25 VAL B 68 SER B 72 5 5 HELIX 26 26 PRO B 75 HIS B 81 5 7 HELIX 27 27 ASP B 82 ALA B 87 1 6 HELIX 28 28 LYS B 156 ASN B 159 5 4 SHEET 1 AA 5 ILE A 196 PHE A 200 0 SHEET 2 AA 5 ARG A 183 ASP A 190 -1 O TYR A 186 N PHE A 200 SHEET 3 AA 5 ARG A 397 THR A 404 -1 O ILE A 398 N LEU A 189 SHEET 4 AA 5 ARG A 383 GLY A 390 -1 O ARG A 383 N THR A 403 SHEET 5 AA 5 PHE A 370 ALA A 377 -1 O PHE A 370 N GLY A 390 SHEET 1 AB 2 PHE A 206 PRO A 207 0 SHEET 2 AB 2 THR A 320 THR A 321 -1 O THR A 321 N PHE A 206 SHEET 1 AC 2 ARG A 234 ILE A 235 0 SHEET 2 AC 2 MET A 257 THR A 258 -1 O MET A 257 N ILE A 235 SHEET 1 BA12 VAL B 12 VAL B 22 0 SHEET 2 BA12 HIS B 25 ASP B 36 -1 O HIS B 25 N VAL B 22 SHEET 3 BA12 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 BA12 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 BA12 HIS B 199 SER B 208 -1 O TYR B 200 N ALA B 227 SHEET 6 BA12 HIS B 148 ASP B 155 -1 O HIS B 148 N THR B 203 SHEET 7 BA12 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 BA12 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 BA12 TYR B 92 PHE B 100 -1 O VAL B 93 N THR B 186 SHEET 10 BA12 ASN B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 BA12 THR B 118 ILE B 128 -1 O THR B 118 N GLU B 115 SHEET 12 BA12 VAL B 12 VAL B 22 1 O PRO B 13 N LEU B 119 SSBOND 1 CYS A 30 CYS A 64 1555 1555 2.03 LINK C PHE B 64 N1 CRO B 66 1555 1555 1.32 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.38 CISPEP 1 ARG A 23 ALA A 24 0 19.31 CISPEP 2 GLU A 306 PRO A 307 0 5.35 CISPEP 3 MET B 88 PRO B 89 0 6.19 CRYST1 90.150 96.170 92.780 90.00 118.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011093 0.000000 0.006146 0.00000 SCALE2 0.000000 0.010398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012322 0.00000