HEADER TRANSFERASE 24-SEP-15 5ARG TITLE SMYD2 IN COMPLEX WITH SGC PROBE BAY-598 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SET DOMAIN, UNP RESIDUES 2-433; COMPND 5 SYNONYM: HSKM-B, HISTONE METHYLTRANSFERASE SMYD2, LYSINE N- COMPND 6 METHYLTRANSFERASE 3C, SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 7 EC: 2.1.1.-, 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS TRANSFERASE, OXIDOREDUCTASE, METHYLTRANSFERASE, SET DOMAIN, SMALL KEYWDS 2 MOLECULE INHIBITOR, SGC PROBE, DRUG TARGET EXPDTA X-RAY DIFFRACTION AUTHOR R.C.HILLIG,V.BADOCK,N.BARAK,T.STELLFELD,E.EGGERT,A.TER LAAK,J.WEISKE, AUTHOR 2 C.D.CHRIST,S.KOEHR,D.STOECKIGT,J.MOWAT,T.MUELLER,A.E.FERNANDEZ- AUTHOR 3 MONTALVAN,I.V.HARTUNG,C.STRESEMANN,T.BRUMBY,H.WEINMANN REVDAT 5 10-JAN-24 5ARG 1 REMARK REVDAT 4 03-APR-19 5ARG 1 REMARK REVDAT 3 13-SEP-17 5ARG 1 REMARK REVDAT 2 08-JUN-16 5ARG 1 JRNL REVDAT 1 27-APR-16 5ARG 0 JRNL AUTH E.EGGERT,R.C.HILLIG,S.KOHR,D.STOCKIGT,J.WEISKE,N.BARAK, JRNL AUTH 2 J.MOWAT,T.BRUMBY,C.D.CHRIST,A.TER LAAK,T.LANG, JRNL AUTH 3 A.E.FERNANDEZ-MONTALVAN,V.BADOCK,H.WEINMANN,I.V.HARTUNG, JRNL AUTH 4 D.BARSYTE-LOVEJOY,M.SZEWCZYK,S.KENNEDY,F.LI,M.VEDADI, JRNL AUTH 5 P.J.BROWN,V.SANTHAKUMAR,C.H.ARROWSMITH,T.STELLFELD, JRNL AUTH 6 C.STRESEMANN JRNL TITL DISCOVERY AND CHARACTERIZATION OF A HIGHLY POTENT AND JRNL TITL 2 SELECTIVE AMINOPYRAZOLINE-BASED IN VIVO PROBE (BAY-598) FOR JRNL TITL 3 THE PROTEIN LYSINE METHYLTRANSFERASE SMYD2. JRNL REF J.MED.CHEM. V. 59 4578 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27075367 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01890 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1683 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.24000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.313 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3641 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3445 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4919 ; 2.033 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7940 ; 0.900 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 6.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;38.541 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;18.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4060 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 826 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1725 ; 3.533 ; 1.406 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1725 ; 3.519 ; 1.406 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2158 ; 4.576 ; 3.140 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 5.015 ; 1.844 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0830 7.7350 -19.7210 REMARK 3 T TENSOR REMARK 3 T11: 0.3683 T22: 0.0454 REMARK 3 T33: 0.0964 T12: -0.0095 REMARK 3 T13: 0.1058 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.9032 L22: 7.9542 REMARK 3 L33: 4.5122 L12: -0.6868 REMARK 3 L13: -0.1579 L23: -4.0574 REMARK 3 S TENSOR REMARK 3 S11: 0.4017 S12: 0.0466 S13: -0.0337 REMARK 3 S21: 0.3478 S22: 0.0318 S23: 0.7051 REMARK 3 S31: -0.7253 S32: 0.2019 S33: -0.4335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 272 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5060 -8.2930 -1.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.4800 T22: 0.1979 REMARK 3 T33: 0.0665 T12: -0.1371 REMARK 3 T13: -0.0716 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.1383 L22: 7.3592 REMARK 3 L33: 4.4377 L12: -0.6555 REMARK 3 L13: -0.2266 L23: -3.2550 REMARK 3 S TENSOR REMARK 3 S11: 0.0923 S12: -0.2470 S13: 0.1593 REMARK 3 S21: 1.4530 S22: -0.4230 S23: -0.5790 REMARK 3 S31: -0.7808 S32: 0.8156 S33: 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. B FACTORS WITH TLS ADDED. REMARK 4 REMARK 4 5ARG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290065088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 48.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.580 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TG5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 100 MMOL HEPES PH 7.0. REMARK 280 CRYO BUFFER CONTAINS AN ADDTIONAL 20% GLYCEROL AND 1 MMOL REMARK 280 LIGAND. OTHER CRYSTALISATION REMARKS:4 MILLIMOLAR COFACTOR SAM REMARK 280 ADDED AND MIXTURE INCUBATED FOR 2 HOURS AT 4 DEGREE CELSIUS REMARK 280 PRIOR TO CRYSTALLIZATION. CO- COMPLEX WITH BAY-598 FORMED BY REMARK 280 SOAKING SMYD2-SAM CRYSTALS WITH 5 MILLIMOLAR LIGAND FOR 4 DAYS., REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.17150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.55750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.55750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.17150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 SER A 432 REMARK 465 HIS A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 313 OE1 GLU A 316 2.10 REMARK 500 ND2 ASN A 180 O HOH A 2045 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 267 CB CYS A 267 SG 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 242 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 CYS A 267 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 CYS A 267 CA - CB - SG ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 13 50.16 -94.87 REMARK 500 CYS A 13 49.87 -94.33 REMARK 500 SER A 14 129.11 -37.98 REMARK 500 GLN A 70 23.88 -142.11 REMARK 500 ASN A 75 172.49 179.94 REMARK 500 ASN A 101 56.62 -157.92 REMARK 500 HIS A 310 -17.25 -49.00 REMARK 500 TYR A 311 -34.72 -165.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H41 A 1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1434 DBREF 5ARG A 2 433 UNP Q9NRG4 SMYD2_HUMAN 2 433 SEQADV 5ARG GLY A 1 UNP Q9NRG4 EXPRESSION TAG SEQRES 1 A 433 GLY ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS SEQRES 2 A 433 SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO SEQRES 3 A 433 PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR SEQRES 4 A 433 ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS SEQRES 5 A 433 GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS SEQRES 6 A 433 GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS SEQRES 7 A 433 GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER SEQRES 8 A 433 PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU SEQRES 9 A 433 THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS SEQRES 10 A 433 ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA SEQRES 11 A 433 VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN SEQRES 12 A 433 GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU SEQRES 13 A 433 HIS HIS PHE TYR SER LYS HIS LEU GLY PHE PRO ASP ASN SEQRES 14 A 433 ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN SEQRES 15 A 433 GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY SEQRES 16 A 433 SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER SEQRES 17 A 433 CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU SEQRES 18 A 433 ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU SEQRES 19 A 433 GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR SEQRES 20 A 433 GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE SEQRES 21 A 433 THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP SEQRES 22 A 433 LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO SEQRES 23 A 433 LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG SEQRES 24 A 433 ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS SEQRES 25 A 433 SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN SEQRES 26 A 433 GLU LYS MET SER SER VAL PHE GLU ASP SER ASN VAL TYR SEQRES 27 A 433 MET LEU HIS MET MET TYR GLN ALA MET GLY VAL CYS LEU SEQRES 28 A 433 TYR MET GLN ASP TRP GLU GLY ALA LEU GLN TYR GLY GLN SEQRES 29 A 433 LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR SEQRES 30 A 433 SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG SEQRES 31 A 433 LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS SEQRES 32 A 433 ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS SEQRES 33 A 433 GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU SEQRES 34 A 433 ILE GLU SER HIS HET ZN A1003 1 HET ZN A1004 1 HET ZN A1005 1 HET H41 A1432 35 HET GOL A1433 6 HET SAM A1434 27 HETNAM ZN ZINC ION HETNAM H41 N-[1-(N'-CYANO-N-[3-(DIFLUOROMETHOXY) HETNAM 2 H41 PHENYL]CARBAMIMIDOYL)-3-(3,4-DICHLOROPHENYL)-4,5- HETNAM 3 H41 DIHYDRO-1H-PYRAZOL-4-YL]-N-ETHYL-2-HYDROXYACETAMIDE HETNAM GOL GLYCEROL HETNAM SAM S-ADENOSYLMETHIONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 3(ZN 2+) FORMUL 5 H41 C22 H20 CL2 F2 N6 O3 FORMUL 6 GOL C3 H8 O3 FORMUL 7 SAM C15 H22 N6 O5 S FORMUL 8 HOH *137(H2 O) HELIX 1 1 VAL A 45 ARG A 48 5 4 HELIX 2 2 ASN A 75 LYS A 87 1 13 HELIX 3 3 GLU A 89 GLY A 97 1 9 HELIX 4 4 GLU A 98 TRP A 100 5 3 HELIX 5 5 SER A 103 HIS A 119 1 17 HELIX 6 6 ALA A 130 PHE A 134 5 5 HELIX 7 7 HIS A 137 LEU A 141 5 5 HELIX 8 8 ASP A 142 SER A 161 1 20 HELIX 9 9 ASP A 168 ASN A 182 1 15 HELIX 10 10 ASP A 201 MET A 205 5 5 HELIX 11 11 PRO A 246 PHE A 259 1 14 HELIX 12 12 CYS A 264 LYS A 270 1 7 HELIX 13 13 LYS A 272 VAL A 277 1 6 HELIX 14 14 LYS A 287 HIS A 310 1 24 HELIX 15 15 SER A 313 SER A 329 1 17 HELIX 16 16 ASN A 336 MET A 353 1 18 HELIX 17 17 ASP A 355 TYR A 374 1 20 HELIX 18 18 SER A 378 LEU A 395 1 18 HELIX 19 19 HIS A 397 HIS A 416 1 20 HELIX 20 20 HIS A 420 ILE A 430 1 11 SHEET 1 AA 2 LEU A 9 PHE A 12 0 SHEET 2 AA 2 GLY A 20 ALA A 23 -1 O GLY A 20 N PHE A 12 SHEET 1 AB 3 LEU A 32 PRO A 37 0 SHEET 2 AB 3 LEU A 221 ALA A 226 -1 O ALA A 222 N CYS A 36 SHEET 3 AB 3 VAL A 213 LYS A 218 -1 O ILE A 214 N ARG A 225 SHEET 1 AC 3 ALA A 40 LEU A 43 0 SHEET 2 AC 3 HIS A 193 ILE A 198 -1 O SER A 196 N VAL A 42 SHEET 3 AC 3 GLY A 183 GLU A 187 -1 O PHE A 184 N ALA A 197 SHEET 1 AD 2 SER A 63 LYS A 64 0 SHEET 2 AD 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 AE 2 ASN A 206 HIS A 207 0 SHEET 2 AE 2 PHE A 237 THR A 238 1 N THR A 238 O ASN A 206 SSBOND 1 CYS A 209 CYS A 267 1555 1555 2.33 SITE 1 AC1 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267 SITE 1 AC2 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78 SITE 1 AC3 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90 SITE 1 AC4 17 GLU A 104 THR A 105 LEU A 108 VAL A 179 SITE 2 AC4 17 ASN A 182 GLY A 183 PHE A 184 THR A 185 SITE 3 AC4 17 SER A 196 VAL A 202 ALA A 203 TYR A 217 SITE 4 AC4 17 TYR A 240 TYR A 258 SAM A1434 HOH A2080 SITE 5 AC4 17 HOH A2089 SITE 1 AC5 8 CYS A 209 LEU A 243 GLU A 266 LYS A 272 SITE 2 AC5 8 LYS A 276 HIS A 373 TYR A 374 PRO A 375 SITE 1 AC6 14 GLY A 16 LYS A 17 ARG A 19 HIS A 137 SITE 2 AC6 14 CYS A 181 ASN A 182 ALA A 203 ASN A 206 SITE 3 AC6 14 HIS A 207 TYR A 240 TYR A 258 PHE A 260 SITE 4 AC6 14 H41 A1432 HOH A2002 CRYST1 52.343 69.600 131.115 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007627 0.00000