HEADER ELECTRON TRANSPORT 08-JUN-15 5AUR TITLE HYDROGENOBACTER THERMOPHILUS CYTOCHROME C552 DIMER FORMED BY DOMAIN TITLE 2 SWAPPING AT N-TERMINAL REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-552; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: CYTOCHROME C552; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS (STRAIN DSM 6534 / SOURCE 3 IAM 12695 / TK-6); SOURCE 4 ORGANISM_TAXID: 608538; SOURCE 5 STRAIN: DSM 6534 / IAM 12695 / TK-6; SOURCE 6 GENE: HTH_0988, HYDTH_0984; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JCB387 KEYWDS ELECTRON TRANSFER, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.REN,S.NAGAO,M.YAMANAKA,H.KAMIKUBO,H.KOMORI,Y.SHOMURA,Y.HIGUCHI, AUTHOR 2 S.HIROTA REVDAT 4 08-NOV-23 5AUR 1 LINK REVDAT 3 19-FEB-20 5AUR 1 REMARK REVDAT 2 25-NOV-15 5AUR 1 JRNL REVDAT 1 21-OCT-15 5AUR 0 JRNL AUTH C.REN,S.NAGAO,M.YAMANAKA,H.KOMORI,Y.SHOMURA,Y.HIGUCHI, JRNL AUTH 2 S.HIROTA JRNL TITL OLIGOMERIZATION ENHANCEMENT AND TWO DOMAIN SWAPPING MODE JRNL TITL 2 DETECTION FOR THERMOSTABLE CYTOCHROME C552VIA THE ELONGATION JRNL TITL 3 OF THE MAJOR HINGE LOOP. JRNL REF MOL BIOSYST V. 11 3218 2015 JRNL REFN ESSN 1742-2051 JRNL PMID 26451671 JRNL DOI 10.1039/C5MB00545K REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.1 REMARK 3 NUMBER OF REFLECTIONS : 62353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3142 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 183 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 2.31000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : -0.12000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2721 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2653 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3715 ; 1.360 ; 2.172 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6131 ; 0.773 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 5.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.279 ;26.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;12.494 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3099 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 517 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1339 ; 3.157 ; 1.915 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1338 ; 3.141 ; 1.911 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1672 ; 3.417 ; 2.877 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1673 ; 3.430 ; 2.880 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1382 ; 3.343 ; 2.175 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1378 ; 3.343 ; 2.176 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2042 ; 4.109 ; 3.079 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3571 ; 4.523 ;16.380 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3443 ; 4.334 ;15.943 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5374 ; 3.573 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 70 ;33.054 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5521 ;16.042 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1300000017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YNR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM POTASSIUM IODIDE, 15% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 13 CAC HEC A 101 2.11 REMARK 500 SG CYS G 13 CAC HEC E 101 2.14 REMARK 500 SG CYS A 13 CAC HEC C 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 277 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 14 NE2 REMARK 620 2 HEC C 101 NA 89.8 REMARK 620 3 HEC C 101 NB 88.5 88.3 REMARK 620 4 HEC C 101 NC 89.3 179.0 91.4 REMARK 620 5 HEC C 101 ND 90.1 90.5 178.1 89.8 REMARK 620 6 MET C 62 SD 176.6 88.1 88.8 92.8 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 62 SD REMARK 620 2 HEC A 101 NA 89.1 REMARK 620 3 HEC A 101 NB 90.0 90.3 REMARK 620 4 HEC A 101 NC 94.0 177.0 89.7 REMARK 620 5 HEC A 101 ND 92.9 90.4 177.0 89.5 REMARK 620 6 HIS C 14 NE2 178.1 91.1 88.1 85.9 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC G 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 14 NE2 REMARK 620 2 HEC G 101 NA 87.8 REMARK 620 3 HEC G 101 NB 88.2 90.4 REMARK 620 4 HEC G 101 NC 89.8 177.2 87.9 REMARK 620 5 HEC G 101 ND 90.2 89.1 178.4 92.5 REMARK 620 6 MET G 62 SD 175.6 91.1 87.5 91.1 94.1 REMARK 620 7 MET G 62 SD 170.2 83.1 95.5 99.4 86.0 11.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC E 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET E 62 SD REMARK 620 2 HEC E 101 NA 86.5 REMARK 620 3 HEC E 101 NB 89.6 90.4 REMARK 620 4 HEC E 101 NC 93.1 179.3 89.1 REMARK 620 5 HEC E 101 ND 91.2 89.6 179.2 90.9 REMARK 620 6 HIS G 14 NE2 176.6 91.8 87.5 88.6 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC A 101 and CYS C REMARK 800 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC E 101 and CYS G REMARK 800 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC G 101 and CYS E REMARK 800 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VYM RELATED DB: PDB REMARK 900 WILD-TYPE DIMER REMARK 900 RELATED ID: 5AUS RELATED DB: PDB DBREF 5AUR A 1 83 UNP P15452 CY552_HYDTT 19 98 DBREF 5AUR C 1 83 UNP P15452 CY552_HYDTT 19 98 DBREF 5AUR E 1 83 UNP P15452 CY552_HYDTT 19 98 DBREF 5AUR G 1 83 UNP P15452 CY552_HYDTT 19 98 SEQADV 5AUR GLY A 19 UNP P15452 INSERTION SEQADV 5AUR GLY A 20 UNP P15452 INSERTION SEQADV 5AUR GLY A 21 UNP P15452 INSERTION SEQADV 5AUR GLY C 19 UNP P15452 INSERTION SEQADV 5AUR GLY C 20 UNP P15452 INSERTION SEQADV 5AUR GLY C 21 UNP P15452 INSERTION SEQADV 5AUR GLY E 19 UNP P15452 INSERTION SEQADV 5AUR GLY E 20 UNP P15452 INSERTION SEQADV 5AUR GLY E 21 UNP P15452 INSERTION SEQADV 5AUR GLY G 19 UNP P15452 INSERTION SEQADV 5AUR GLY G 20 UNP P15452 INSERTION SEQADV 5AUR GLY G 21 UNP P15452 INSERTION SEQRES 1 A 83 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS SEQRES 2 A 83 HIS ASP LEU LYS ALA GLY GLY GLY LYS LYS VAL GLY PRO SEQRES 3 A 83 ALA TYR ALA ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS SEQRES 4 A 83 ASP ALA VAL ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY SEQRES 5 A 83 GLY SER GLY VAL TRP GLY SER VAL PRO MET PRO PRO GLN SEQRES 6 A 83 ASN VAL THR ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP SEQRES 7 A 83 ILE LEU SER ILE LYS SEQRES 1 C 83 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS SEQRES 2 C 83 HIS ASP LEU LYS ALA GLY GLY GLY LYS LYS VAL GLY PRO SEQRES 3 C 83 ALA TYR ALA ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS SEQRES 4 C 83 ASP ALA VAL ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY SEQRES 5 C 83 GLY SER GLY VAL TRP GLY SER VAL PRO MET PRO PRO GLN SEQRES 6 C 83 ASN VAL THR ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP SEQRES 7 C 83 ILE LEU SER ILE LYS SEQRES 1 E 83 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS SEQRES 2 E 83 HIS ASP LEU LYS ALA GLY GLY GLY LYS LYS VAL GLY PRO SEQRES 3 E 83 ALA TYR ALA ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS SEQRES 4 E 83 ASP ALA VAL ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY SEQRES 5 E 83 GLY SER GLY VAL TRP GLY SER VAL PRO MET PRO PRO GLN SEQRES 6 E 83 ASN VAL THR ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP SEQRES 7 E 83 ILE LEU SER ILE LYS SEQRES 1 G 83 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS SEQRES 2 G 83 HIS ASP LEU LYS ALA GLY GLY GLY LYS LYS VAL GLY PRO SEQRES 3 G 83 ALA TYR ALA ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS SEQRES 4 G 83 ASP ALA VAL ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY SEQRES 5 G 83 GLY SER GLY VAL TRP GLY SER VAL PRO MET PRO PRO GLN SEQRES 6 G 83 ASN VAL THR ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP SEQRES 7 G 83 ILE LEU SER ILE LYS HET HEC A 101 43 HET IOD A 102 1 HET IOD A 103 1 HET IOD A 104 1 HET IOD A 105 1 HET IOD A 106 1 HET IOD A 107 1 HET IOD A 108 1 HET HEC C 101 43 HET IOD C 102 1 HET IOD C 103 1 HET IOD C 104 1 HET HEC E 101 43 HET IOD E 102 1 HET HEC G 101 43 HETNAM HEC HEME C HETNAM IOD IODIDE ION FORMUL 5 HEC 4(C34 H34 FE N4 O4) FORMUL 6 IOD 11(I 1-) FORMUL 20 HOH *281(H2 O) HELIX 1 AA1 ASN A 1 LYS A 8 1 8 HELIX 2 AA2 GLY A 9 CYS A 13 5 5 HELIX 3 AA3 ALA A 27 ALA A 36 1 10 HELIX 4 AA4 ASP A 40 GLY A 52 1 13 HELIX 5 AA5 THR A 68 SER A 81 1 14 HELIX 6 AA6 GLU C 2 LYS C 8 1 7 HELIX 7 AA7 GLY C 9 CYS C 13 5 5 HELIX 8 AA8 ALA C 27 ALA C 36 1 10 HELIX 9 AA9 ASP C 40 GLY C 52 1 13 HELIX 10 AB1 THR C 68 ILE C 82 1 15 HELIX 11 AB2 GLU E 2 LYS E 8 1 7 HELIX 12 AB3 GLY E 9 CYS E 13 5 5 HELIX 13 AB4 ALA E 27 ALA E 36 1 10 HELIX 14 AB5 ASP E 40 GLY E 52 1 13 HELIX 15 AB6 THR E 68 ILE E 82 1 15 HELIX 16 AB7 GLU G 2 LYS G 8 1 7 HELIX 17 AB8 GLY G 9 CYS G 13 5 5 HELIX 18 AB9 ALA G 27 ALA G 36 1 10 HELIX 19 AC1 ASP G 40 GLY G 52 1 13 HELIX 20 AC2 THR G 68 SER G 81 1 14 LINK SG CYS A 10 CAB HEC C 101 1555 1555 1.82 LINK CAB HEC A 101 SG CYS C 10 1555 1555 1.76 LINK SG CYS E 10 CAB HEC G 101 1555 1555 1.80 LINK CAB HEC E 101 SG CYS G 10 1555 1555 1.82 LINK NE2 HIS A 14 FE HEC C 101 1555 1555 2.04 LINK SD MET A 62 FE HEC A 101 1555 1555 2.25 LINK FE HEC A 101 NE2 HIS C 14 1555 1555 2.07 LINK SD MET C 62 FE HEC C 101 1555 1555 2.31 LINK NE2 HIS E 14 FE HEC G 101 1555 1555 2.07 LINK SD MET E 62 FE HEC E 101 1555 1555 2.30 LINK FE HEC E 101 NE2 HIS G 14 1555 1555 2.07 LINK SD AMET G 62 FE HEC G 101 1555 1555 2.26 LINK SD BMET G 62 FE HEC G 101 1555 1555 2.39 SITE 1 AC1 2 ASP A 69 HOH A 273 SITE 1 AC2 4 GLN A 7 HOH A 257 HOH A 268 GLN G 7 SITE 1 AC3 2 LYS A 50 LYS A 51 SITE 1 AC4 2 HOH A 254 HOH A 277 SITE 1 AC5 1 GLN A 65 SITE 1 AC6 20 CYS A 10 CYS A 13 HIS A 14 PRO C 26 SITE 2 AC6 20 TYR C 28 TYR C 35 TYR C 44 LYS C 48 SITE 3 AC6 20 ILE C 49 GLY C 53 SER C 54 GLY C 55 SITE 4 AC6 20 VAL C 56 TRP C 57 GLY C 58 VAL C 60 SITE 5 AC6 20 MET C 62 GLN C 65 HOH C 210 HOH C 213 SITE 1 AC7 4 GLN C 7 HOH C 262 HOH C 271 GLN E 7 SITE 1 AC8 1 ARG E 38 SITE 1 AC9 48 ALA A 5 LYS A 8 GLY A 9 MET A 11 SITE 2 AC9 48 ALA A 12 CYS A 13 HIS A 14 PRO A 26 SITE 3 AC9 48 TYR A 28 TYR A 35 TYR A 44 LYS A 48 SITE 4 AC9 48 ILE A 49 SER A 54 GLY A 55 VAL A 56 SITE 5 AC9 48 TRP A 57 GLY A 58 VAL A 60 MET A 62 SITE 6 AC9 48 GLN A 65 HOH A 208 HOH A 227 ALA C 5 SITE 7 AC9 48 LYS C 8 GLY C 9 MET C 11 ALA C 12 SITE 8 AC9 48 CYS C 13 HIS C 14 PRO C 26 TYR C 28 SITE 9 AC9 48 TYR C 35 TYR C 44 LYS C 48 ILE C 49 SITE 10 AC9 48 GLY C 53 SER C 54 GLY C 55 VAL C 56 SITE 11 AC9 48 TRP C 57 GLY C 58 VAL C 60 MET C 62 SITE 12 AC9 48 GLN C 65 HOH C 210 HOH C 213 SER G 59 SITE 1 AD1 47 SER C 59 ALA E 5 LYS E 8 GLY E 9 SITE 2 AD1 47 MET E 11 ALA E 12 CYS E 13 HIS E 14 SITE 3 AD1 47 PRO E 26 TYR E 28 TYR E 35 TYR E 44 SITE 4 AD1 47 LYS E 48 ILE E 49 SER E 54 GLY E 55 SITE 5 AD1 47 VAL E 56 TRP E 57 GLY E 58 VAL E 60 SITE 6 AD1 47 MET E 62 GLN E 65 HOH E 204 HOH E 210 SITE 7 AD1 47 ALA G 5 LYS G 8 GLY G 9 MET G 11 SITE 8 AD1 47 ALA G 12 CYS G 13 HIS G 14 PRO G 26 SITE 9 AD1 47 TYR G 28 TYR G 35 TYR G 44 LYS G 48 SITE 10 AD1 47 GLY G 53 SER G 54 GLY G 55 VAL G 56 SITE 11 AD1 47 TRP G 57 GLY G 58 VAL G 60 MET G 62 SITE 12 AD1 47 HOH G 206 HOH G 216 HOH G 224 SITE 1 AD2 47 SER C 59 ALA E 5 LYS E 8 GLY E 9 SITE 2 AD2 47 MET E 11 ALA E 12 CYS E 13 HIS E 14 SITE 3 AD2 47 PRO E 26 TYR E 28 TYR E 35 TYR E 44 SITE 4 AD2 47 LYS E 48 ILE E 49 SER E 54 GLY E 55 SITE 5 AD2 47 VAL E 56 TRP E 57 GLY E 58 VAL E 60 SITE 6 AD2 47 MET E 62 GLN E 65 HOH E 204 HOH E 210 SITE 7 AD2 47 ALA G 5 LYS G 8 GLY G 9 MET G 11 SITE 8 AD2 47 ALA G 12 CYS G 13 HIS G 14 PRO G 26 SITE 9 AD2 47 TYR G 28 TYR G 35 TYR G 44 LYS G 48 SITE 10 AD2 47 GLY G 53 SER G 54 GLY G 55 VAL G 56 SITE 11 AD2 47 TRP G 57 GLY G 58 VAL G 60 MET G 62 SITE 12 AD2 47 HOH G 206 HOH G 216 HOH G 224 CRYST1 32.850 42.898 53.591 86.73 86.51 89.83 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030441 -0.000093 -0.001853 0.00000 SCALE2 0.000000 0.023311 -0.001328 0.00000 SCALE3 0.000000 0.000000 0.018725 0.00000