HEADER TRANSFERASE 06-JUL-15 5AWM TITLE THE CRYSTAL STRUCTURE OF JNK FROM DROSOPHILA MELANOGASTER REVEALS AN TITLE 2 EVOLUTIONARILY CONSERVED TOPOLOGY WITH THAT OF MAMMALIAN JNK TITLE 3 PROTEINS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRESS-ACTIVATED PROTEIN KINASE JNK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DJNK,PROTEIN BASKET; COMPND 5 EC: 2.7.11.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: BSK, JNK, CG5680; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS C-JUN N-TERMINAL KINASE, MAP KINASE, DROSOPHILA JNK PATHWAY, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BOONSERM REVDAT 4 08-NOV-23 5AWM 1 LINK REVDAT 3 26-FEB-20 5AWM 1 REMARK REVDAT 2 11-NOV-15 5AWM 1 JRNL REVDAT 1 05-AUG-15 5AWM 0 SPRSDE 05-AUG-15 5AWM 4M3A JRNL AUTH S.CHIMNARONK,J.SITTHIROONGRUANG,K.SRISUCHARITPANIT, JRNL AUTH 2 M.SRISAISUP,A.J.KETTERMAN,P.BOONSERM JRNL TITL THE CRYSTAL STRUCTURE OF JNK FROM DROSOPHILA MELANOGASTER JRNL TITL 2 REVEALS AN EVOLUTIONARILY CONSERVED TOPOLOGY WITH THAT OF JRNL TITL 3 MAMMALIAN JNK PROTEINS. JRNL REF BMC STRUCT.BIOL. V. 15 17 2015 JRNL REFN ESSN 1472-6807 JRNL PMID 26377800 JRNL DOI 10.1186/S12900-015-0045-1 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 31789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3586 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2318 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2810 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2904 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2741 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3938 ; 1.982 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6285 ; 1.115 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 6.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;37.087 ;23.836 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;13.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3242 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 691 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1375 ; 2.710 ; 2.356 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1374 ; 2.703 ; 2.353 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1710 ; 3.901 ; 3.503 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1711 ; 3.899 ; 3.505 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 3.795 ; 2.836 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1528 ; 3.796 ; 2.837 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2229 ; 5.731 ; 4.081 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3260 ; 7.322 ;19.351 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3209 ; 7.274 ;19.265 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1300000092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 28.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1180 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XS0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 4000, 0.1 M TRIS-HCL PH REMARK 280 8.5 AND 0.2 M MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.24300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.35850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.66450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.35850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.24300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.66450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 PRO A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 ARG A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 HIS A 6 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 35 REMARK 465 THR A 181 REMARK 465 PRO A 182 REMARK 465 TYR A 183 REMARK 465 ASN A 282 REMARK 465 ASN A 283 REMARK 465 ASP A 342 REMARK 465 GLU A 343 REMARK 465 GLU A 363 REMARK 465 ALA A 364 REMARK 465 HIS A 365 REMARK 465 ASN A 366 REMARK 465 THR A 367 REMARK 465 ASN A 368 REMARK 465 ASN A 369 REMARK 465 ARG A 370 REMARK 465 THR A 371 REMARK 465 ARG A 372 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 193 CD GLU A 193 OE1 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 122 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 263 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 294 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 294 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 304 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 SER A 340 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 SER A 340 N - CA - CB ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 57 59.45 36.36 REMARK 500 GLN A 100 -51.04 -128.33 REMARK 500 ASP A 120 80.96 70.75 REMARK 500 ARG A 148 -11.27 75.26 REMARK 500 HIS A 339 82.06 -67.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 339 SER A 340 -148.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 154 OD1 REMARK 620 2 ANP A 401 O2G 94.7 REMARK 620 3 ANP A 401 O1B 167.7 93.4 REMARK 620 4 ANP A 401 O1A 82.7 94.1 87.5 REMARK 620 5 HOH A 538 O 90.3 83.6 99.7 172.5 REMARK 620 6 HOH A 542 O 83.7 175.2 88.9 90.3 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 401 O3G REMARK 620 2 HOH A 532 O 80.6 REMARK 620 3 HOH A 570 O 91.6 96.2 REMARK 620 4 HOH A 581 O 151.4 77.9 109.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M3A RELATED DB: PDB DBREF 5AWM A 1 372 UNP P92208 JNK_DROME 1 372 SEQADV 5AWM MET A -21 UNP P92208 EXPRESSION TAG SEQADV 5AWM GLY A -20 UNP P92208 EXPRESSION TAG SEQADV 5AWM SER A -19 UNP P92208 EXPRESSION TAG SEQADV 5AWM SER A -18 UNP P92208 EXPRESSION TAG SEQADV 5AWM HIS A -17 UNP P92208 EXPRESSION TAG SEQADV 5AWM HIS A -16 UNP P92208 EXPRESSION TAG SEQADV 5AWM HIS A -15 UNP P92208 EXPRESSION TAG SEQADV 5AWM HIS A -14 UNP P92208 EXPRESSION TAG SEQADV 5AWM HIS A -13 UNP P92208 EXPRESSION TAG SEQADV 5AWM HIS A -12 UNP P92208 EXPRESSION TAG SEQADV 5AWM SER A -11 UNP P92208 EXPRESSION TAG SEQADV 5AWM SER A -10 UNP P92208 EXPRESSION TAG SEQADV 5AWM GLY A -9 UNP P92208 EXPRESSION TAG SEQADV 5AWM LEU A -8 UNP P92208 EXPRESSION TAG SEQADV 5AWM VAL A -7 UNP P92208 EXPRESSION TAG SEQADV 5AWM PRO A -6 UNP P92208 EXPRESSION TAG SEQADV 5AWM ARG A -5 UNP P92208 EXPRESSION TAG SEQADV 5AWM GLY A -4 UNP P92208 EXPRESSION TAG SEQADV 5AWM SER A -3 UNP P92208 EXPRESSION TAG SEQADV 5AWM HIS A -2 UNP P92208 EXPRESSION TAG SEQADV 5AWM ARG A -1 UNP P92208 EXPRESSION TAG SEQADV 5AWM THR A 0 UNP P92208 EXPRESSION TAG SEQRES 1 A 394 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 394 LEU VAL PRO ARG GLY SER HIS ARG THR MET THR THR ALA SEQRES 3 A 394 GLN HIS GLN HIS TYR THR VAL GLU VAL GLY ASP THR ASN SEQRES 4 A 394 PHE THR ILE HIS SER ARG TYR ILE ASN LEU ARG PRO ILE SEQRES 5 A 394 GLY SER GLY ALA GLN GLY ILE VAL CYS ALA ALA TYR ASP SEQRES 6 A 394 THR ILE THR GLN GLN ASN VAL ALA ILE LYS LYS LEU SER SEQRES 7 A 394 ARG PRO PHE GLN ASN VAL THR HIS ALA LYS ARG ALA TYR SEQRES 8 A 394 ARG GLU PHE LYS LEU MET LYS LEU VAL ASN HIS LYS ASN SEQRES 9 A 394 ILE ILE GLY LEU LEU ASN ALA PHE THR PRO GLN ARG ASN SEQRES 10 A 394 LEU GLU GLU PHE GLN ASP VAL TYR LEU VAL MET GLU LEU SEQRES 11 A 394 MET ASP ALA ASN LEU CYS GLN VAL ILE GLN MET ASP LEU SEQRES 12 A 394 ASP HIS ASP ARG MET SER TYR LEU LEU TYR GLN MET LEU SEQRES 13 A 394 CYS GLY ILE LYS HIS LEU HIS SER ALA GLY ILE ILE HIS SEQRES 14 A 394 ARG ASP LEU LYS PRO SER ASN ILE VAL VAL LYS ALA ASP SEQRES 15 A 394 CYS THR LEU LYS ILE LEU ASP PHE GLY LEU ALA ARG THR SEQRES 16 A 394 ALA GLY THR THR PHE MET MET THR PRO TYR VAL VAL THR SEQRES 17 A 394 ARG TYR TYR ARG ALA PRO GLU VAL ILE LEU GLY MET GLY SEQRES 18 A 394 TYR THR GLU ASN VAL ASP ILE TRP SER VAL GLY CYS ILE SEQRES 19 A 394 MET GLY GLU MET ILE ARG GLY GLY VAL LEU PHE PRO GLY SEQRES 20 A 394 THR ASP HIS ILE ASP GLN TRP ASN LYS ILE ILE GLU GLN SEQRES 21 A 394 LEU GLY THR PRO SER PRO SER PHE MET GLN ARG LEU GLN SEQRES 22 A 394 PRO THR VAL ARG ASN TYR VAL GLU ASN ARG PRO ARG TYR SEQRES 23 A 394 THR GLY TYR SER PHE ASP ARG LEU PHE PRO ASP GLY LEU SEQRES 24 A 394 PHE PRO ASN ASP ASN ASN GLN ASN SER ARG ARG LYS ALA SEQRES 25 A 394 SER ASP ALA ARG ASN LEU LEU SER LYS MET LEU VAL ILE SEQRES 26 A 394 ASP PRO GLU GLN ARG ILE SER VAL ASP GLU ALA LEU LYS SEQRES 27 A 394 HIS GLU TYR ILE ASN VAL TRP TYR ASP ALA GLU GLU VAL SEQRES 28 A 394 ASP ALA PRO ALA PRO GLU PRO TYR ASP HIS SER VAL ASP SEQRES 29 A 394 GLU ARG GLU HIS THR VAL GLU GLN TRP LYS GLU LEU ILE SEQRES 30 A 394 TYR GLU GLU VAL MET ASP TYR GLU ALA HIS ASN THR ASN SEQRES 31 A 394 ASN ARG THR ARG HET ANP A 401 31 HET MG A 402 1 HET MG A 403 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *143(H2 O) HELIX 1 AA1 ASN A 61 VAL A 78 1 18 HELIX 2 AA2 LEU A 113 MET A 119 1 7 HELIX 3 AA3 ASP A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 ALA A 191 LEU A 196 1 6 HELIX 6 AA6 ASN A 203 GLY A 219 1 17 HELIX 7 AA7 ASP A 227 GLY A 240 1 14 HELIX 8 AA8 SER A 243 ARG A 249 1 7 HELIX 9 AA9 GLN A 251 ASN A 260 1 10 HELIX 10 AB1 SER A 268 PHE A 273 1 6 HELIX 11 AB2 PRO A 274 PHE A 278 5 5 HELIX 12 AB3 ASN A 285 LEU A 301 1 17 HELIX 13 AB4 ASP A 304 ARG A 308 5 5 HELIX 14 AB5 SER A 310 HIS A 317 1 8 HELIX 15 AB6 ILE A 320 TYR A 324 5 5 HELIX 16 AB7 ASP A 325 ASP A 330 1 6 HELIX 17 AB8 THR A 347 TYR A 362 1 16 SHEET 1 AA1 2 HIS A 8 VAL A 13 0 SHEET 2 AA1 2 THR A 16 HIS A 21 -1 O THR A 16 N VAL A 13 SHEET 1 AA2 5 TYR A 24 PRO A 29 0 SHEET 2 AA2 5 VAL A 38 ASP A 43 -1 O TYR A 42 N ILE A 25 SHEET 3 AA2 5 GLN A 48 SER A 56 -1 O VAL A 50 N ALA A 41 SHEET 4 AA2 5 ASP A 101 GLU A 107 -1 O VAL A 102 N LEU A 55 SHEET 5 AA2 5 ASN A 88 PHE A 90 -1 N ASN A 88 O VAL A 105 SHEET 1 AA3 3 ALA A 111 ASN A 112 0 SHEET 2 AA3 3 ILE A 155 VAL A 157 -1 O VAL A 157 N ALA A 111 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N VAL A 156 LINK OD1 ASN A 154 MG MG A 402 1555 1555 2.14 LINK O2G ANP A 401 MG MG A 402 1555 1555 1.90 LINK O1B ANP A 401 MG MG A 402 1555 1555 2.04 LINK O1A ANP A 401 MG MG A 402 1555 1555 2.07 LINK O3G ANP A 401 MG MG A 403 1555 1555 2.16 LINK MG MG A 402 O HOH A 538 1555 1555 2.16 LINK MG MG A 402 O HOH A 542 1555 1555 1.95 LINK MG MG A 403 O HOH A 532 1555 1555 2.39 LINK MG MG A 403 O HOH A 570 1555 1555 1.76 LINK MG MG A 403 O HOH A 581 1555 1555 2.09 SITE 1 AC1 22 ILE A 30 GLY A 31 ILE A 37 VAL A 38 SITE 2 AC1 22 ALA A 51 LYS A 53 MET A 106 GLU A 107 SITE 3 AC1 22 MET A 109 ASN A 112 SER A 153 ASN A 154 SITE 4 AC1 22 MG A 402 MG A 403 HOH A 527 HOH A 532 SITE 5 AC1 22 HOH A 538 HOH A 542 HOH A 543 HOH A 561 SITE 6 AC1 22 HOH A 570 HOH A 605 SITE 1 AC2 4 ASN A 154 ANP A 401 HOH A 538 HOH A 542 SITE 1 AC3 5 GLU A 71 ANP A 401 HOH A 532 HOH A 570 SITE 2 AC3 5 HOH A 581 CRYST1 52.486 55.329 126.717 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007892 0.00000