HEADER ENDOCYTOSIS 08-JUL-15 5AWR TITLE CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN THE P4212 SPACE TITLE 2 GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3-CONTAINING GRB2-LIKE PROTEIN 3-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 552-828; COMPND 5 SYNONYM: ENDOPHILIN-3-INTERACTING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SGIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS ENDOCYTOSIS, PROTEIN-PROTEIN INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIMADA,A.YAMAGUCHI,D.KOHDA REVDAT 2 26-FEB-20 5AWR 1 REMARK REVDAT 1 06-JUL-16 5AWR 0 JRNL AUTH A.SHIMADA,A.YAMAGUCHI,D.KOHDA JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF TWO CONSECUTIVE JRNL TITL 2 MUTUALLY INTERACTING DPF MOTIFS BY THE SGIP1 MU HOMOLOGY JRNL TITL 3 DOMAIN. JRNL REF SCI REP V. 6 19565 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26822536 JRNL DOI 10.1038/SREP19565 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8340 - 5.7227 0.99 2534 121 0.1958 0.2407 REMARK 3 2 5.7227 - 4.5445 1.00 2552 125 0.1544 0.1815 REMARK 3 3 4.5445 - 3.9707 1.00 2529 133 0.1705 0.2321 REMARK 3 4 3.9707 - 3.6079 1.00 2539 134 0.1885 0.2589 REMARK 3 5 3.6079 - 3.3495 1.00 2535 147 0.2065 0.2567 REMARK 3 6 3.3495 - 3.1521 1.00 2529 129 0.2334 0.2406 REMARK 3 7 3.1521 - 2.9943 1.00 2542 131 0.2370 0.2348 REMARK 3 8 2.9943 - 2.8640 1.00 2528 144 0.2172 0.2966 REMARK 3 9 2.8640 - 2.7538 1.00 2521 139 0.2525 0.3737 REMARK 3 10 2.7538 - 2.6588 1.00 2499 141 0.2686 0.3077 REMARK 3 11 2.6588 - 2.5757 1.00 2569 138 0.3043 0.3384 REMARK 3 12 2.5757 - 2.5020 0.99 2491 160 0.3361 0.3561 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2114 REMARK 3 ANGLE : 1.140 2876 REMARK 3 CHIRALITY : 0.075 328 REMARK 3 PLANARITY : 0.006 372 REMARK 3 DIHEDRAL : 15.047 774 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 557 THROUGH 616 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4017 75.7293 26.9250 REMARK 3 T TENSOR REMARK 3 T11: 0.5499 T22: 0.3792 REMARK 3 T33: 0.3819 T12: 0.0192 REMARK 3 T13: 0.0152 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.5504 L22: 2.3761 REMARK 3 L33: 3.5901 L12: 2.0452 REMARK 3 L13: -1.2769 L23: -1.9014 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.4487 S13: 0.5690 REMARK 3 S21: 0.2200 S22: 0.1880 S23: 0.4215 REMARK 3 S31: -0.4441 S32: -0.2323 S33: -0.2786 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 617 THROUGH 648 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2133 67.0418 21.5269 REMARK 3 T TENSOR REMARK 3 T11: 0.6380 T22: 0.6156 REMARK 3 T33: 0.4525 T12: -0.2028 REMARK 3 T13: -0.0317 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 7.3937 L22: 3.0591 REMARK 3 L33: 8.3717 L12: 1.3891 REMARK 3 L13: -4.3446 L23: -1.5448 REMARK 3 S TENSOR REMARK 3 S11: -0.3885 S12: 1.1196 S13: -0.1014 REMARK 3 S21: -0.6260 S22: 0.3372 S23: -0.0214 REMARK 3 S31: -0.0443 S32: -0.5768 S33: 0.0612 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 649 THROUGH 678 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3420 71.0820 38.0052 REMARK 3 T TENSOR REMARK 3 T11: 0.7512 T22: 0.7801 REMARK 3 T33: 0.5150 T12: -0.0553 REMARK 3 T13: 0.0688 T23: -0.1104 REMARK 3 L TENSOR REMARK 3 L11: 2.7163 L22: 4.5433 REMARK 3 L33: 2.0297 L12: 0.8259 REMARK 3 L13: -1.2976 L23: -0.6475 REMARK 3 S TENSOR REMARK 3 S11: 0.4639 S12: -0.7040 S13: 0.5851 REMARK 3 S21: 1.1659 S22: 0.1128 S23: 0.1398 REMARK 3 S31: -0.8924 S32: -0.3454 S33: -0.5193 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 679 THROUGH 722 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9953 87.0806 11.3464 REMARK 3 T TENSOR REMARK 3 T11: 0.6407 T22: 0.6108 REMARK 3 T33: 0.4304 T12: -0.1119 REMARK 3 T13: -0.0215 T23: 0.0833 REMARK 3 L TENSOR REMARK 3 L11: 9.3279 L22: 3.1702 REMARK 3 L33: 2.8469 L12: 0.9586 REMARK 3 L13: -0.7426 L23: -0.8681 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.7501 S13: 0.8116 REMARK 3 S21: -0.2366 S22: 0.2088 S23: 0.1999 REMARK 3 S31: -0.2219 S32: 0.3110 S33: -0.2019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 723 THROUGH 787 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8059 91.1525 18.3309 REMARK 3 T TENSOR REMARK 3 T11: 0.7142 T22: 0.6263 REMARK 3 T33: 0.5790 T12: -0.2228 REMARK 3 T13: -0.0193 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 6.2975 L22: 3.6841 REMARK 3 L33: 3.1876 L12: 2.1060 REMARK 3 L13: -0.3321 L23: 0.3359 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.1193 S13: 0.8453 REMARK 3 S21: 0.2883 S22: 0.0647 S23: -0.5583 REMARK 3 S31: -0.4859 S32: 0.6277 S33: 0.0571 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 788 THROUGH 828 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9966 81.4442 22.7794 REMARK 3 T TENSOR REMARK 3 T11: 0.5472 T22: 0.3849 REMARK 3 T33: 0.4105 T12: 0.0392 REMARK 3 T13: 0.0186 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 9.0513 L22: 2.9801 REMARK 3 L33: 2.8103 L12: 3.0961 REMARK 3 L13: -2.7375 L23: -1.0897 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.2819 S13: 0.9176 REMARK 3 S21: 0.0960 S22: 0.2102 S23: 0.5900 REMARK 3 S31: -0.4773 S32: 0.0968 S33: -0.1979 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5AWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1300000095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17337 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 32.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS AND REMARK 200 I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, ZINC ACETATE, SODIUM REMARK 280 ACETATE, SODIUM IODIDE, PH 5.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.91300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.91300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.91300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.91300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.91300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.91300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.91300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.91300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 547 REMARK 465 PRO A 548 REMARK 465 LEU A 549 REMARK 465 GLY A 550 REMARK 465 SER A 551 REMARK 465 LEU A 552 REMARK 465 THR A 553 REMARK 465 MSE A 554 REMARK 465 GLY A 555 REMARK 465 ALA A 556 REMARK 465 ASP A 634 REMARK 465 ASN A 635 REMARK 465 THR A 636 REMARK 465 GLN A 637 REMARK 465 ASN A 638 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 593 OD1 ASN A 670 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 558 49.89 -83.49 REMARK 500 SER A 607 72.87 -116.75 REMARK 500 CYS A 632 10.70 99.81 REMARK 500 ALA A 640 -121.97 55.40 REMARK 500 LEU A 814 139.25 -172.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 558 OD2 REMARK 620 2 HIS A 601 ND1 122.4 REMARK 620 3 GLU A 748 OE1 134.5 79.8 REMARK 620 4 GLU A 748 OE2 135.0 80.5 1.2 REMARK 620 5 HOH A1001 O 121.1 103.5 24.1 23.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 589 OE1 REMARK 620 2 GLU A 589 OE2 49.3 REMARK 620 3 HOH A1033 O 168.2 137.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 655 ND1 REMARK 620 2 HOH A1030 O 98.5 REMARK 620 3 HOH A1031 O 110.2 111.1 REMARK 620 4 HOH A1016 O 109.2 103.8 121.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AWS RELATED DB: PDB REMARK 900 RELATED ID: 5AWT RELATED DB: PDB REMARK 900 RELATED ID: 5AWU RELATED DB: PDB DBREF 5AWR A 552 828 UNP Q9BQI5 SGIP1_HUMAN 552 828 SEQADV 5AWR GLY A 547 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWR PRO A 548 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWR LEU A 549 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWR GLY A 550 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWR SER A 551 UNP Q9BQI5 EXPRESSION TAG SEQRES 1 A 282 GLY PRO LEU GLY SER LEU THR MSE GLY ALA GLN ASP THR SEQRES 2 A 282 LEU PRO VAL ALA ALA ALA PHE THR GLU THR VAL ASN ALA SEQRES 3 A 282 TYR PHE LYS GLY ALA ASP PRO SER LYS CYS ILE VAL LYS SEQRES 4 A 282 ILE THR GLY GLU MSE VAL LEU SER PHE PRO ALA GLY ILE SEQRES 5 A 282 THR ARG HIS PHE ALA ASN ASN PRO SER PRO ALA ALA LEU SEQRES 6 A 282 THR PHE ARG VAL ILE ASN PHE SER ARG LEU GLU HIS VAL SEQRES 7 A 282 LEU PRO ASN PRO GLN LEU LEU CYS CYS ASP ASN THR GLN SEQRES 8 A 282 ASN ASP ALA ASN THR LYS GLU PHE TRP VAL ASN MSE PRO SEQRES 9 A 282 ASN LEU MSE THR HIS LEU LYS LYS VAL SER GLU GLN LYS SEQRES 10 A 282 PRO GLN ALA THR TYR TYR ASN VAL ASP MSE LEU LYS TYR SEQRES 11 A 282 GLN VAL SER ALA GLN GLY ILE GLN SER THR PRO LEU ASN SEQRES 12 A 282 LEU ALA VAL ASN TRP ARG CYS GLU PRO SER SER THR ASP SEQRES 13 A 282 LEU ARG ILE ASP TYR LYS TYR ASN THR ASP ALA MSE THR SEQRES 14 A 282 THR ALA VAL ALA LEU ASN ASN VAL GLN PHE LEU VAL PRO SEQRES 15 A 282 ILE ASP GLY GLY VAL THR LYS LEU GLN ALA VAL LEU PRO SEQRES 16 A 282 PRO ALA VAL TRP ASN ALA GLU GLN GLN ARG ILE LEU TRP SEQRES 17 A 282 LYS ILE PRO ASP ILE SER GLN LYS SER GLU ASN GLY GLY SEQRES 18 A 282 VAL GLY SER LEU LEU ALA ARG PHE GLN LEU SER GLU GLY SEQRES 19 A 282 PRO SER LYS PRO SER PRO LEU VAL VAL GLN PHE THR SER SEQRES 20 A 282 GLU GLY SER THR LEU SER GLY CYS ASP ILE GLU LEU VAL SEQRES 21 A 282 GLY ALA GLY TYR ARG PHE SER LEU ILE LYS LYS ARG PHE SEQRES 22 A 282 ALA ALA GLY LYS TYR LEU ALA ASP ASN MODRES 5AWR MSE A 590 MET MODIFIED RESIDUE MODRES 5AWR MSE A 649 MET MODIFIED RESIDUE MODRES 5AWR MSE A 653 MET MODIFIED RESIDUE MODRES 5AWR MSE A 673 MET MODIFIED RESIDUE MODRES 5AWR MSE A 714 MET MODIFIED RESIDUE HET MSE A 590 8 HET MSE A 649 8 HET MSE A 653 8 HET MSE A 673 8 HET MSE A 714 8 HET ZN A 901 1 HET ZN A 902 1 HET ZN A 903 1 HET ZN A 904 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ZN 4(ZN 2+) FORMUL 6 HOH *38(H2 O) HELIX 1 AA1 ASP A 578 CYS A 582 5 5 HELIX 2 AA2 GLY A 597 ASN A 604 1 8 HELIX 3 AA3 ASN A 648 GLU A 661 1 14 HELIX 4 AA4 GLN A 681 THR A 686 5 6 HELIX 5 AA5 THR A 711 MSE A 714 5 4 HELIX 6 AA6 SER A 763 GLY A 766 5 4 SHEET 1 AA1 9 LEU A 621 PRO A 626 0 SHEET 2 AA1 9 TYR A 668 VAL A 678 -1 O LYS A 675 N LEU A 625 SHEET 3 AA1 9 ILE A 583 PRO A 595 -1 N LEU A 592 O VAL A 671 SHEET 4 AA1 9 LEU A 560 LYS A 575 -1 N THR A 569 O THR A 587 SHEET 5 AA1 9 TYR A 810 ASP A 827 1 O ARG A 811 N VAL A 562 SHEET 6 AA1 9 LEU A 787 GLU A 794 -1 N LEU A 787 O ALA A 826 SHEET 7 AA1 9 LEU A 720 PRO A 728 -1 N ASN A 721 O THR A 792 SHEET 8 AA1 9 ARG A 751 ILE A 759 -1 O ILE A 752 N VAL A 727 SHEET 9 AA1 9 VAL A 744 ASN A 746 -1 N ASN A 746 O ARG A 751 SHEET 1 AA2 3 THR A 642 TRP A 646 0 SHEET 2 AA2 3 THR A 612 ILE A 616 -1 N PHE A 613 O PHE A 645 SHEET 3 AA2 3 ASP A 802 VAL A 806 -1 O VAL A 806 N THR A 612 SHEET 1 AA3 4 LEU A 688 GLU A 697 0 SHEET 2 AA3 4 SER A 700 TYR A 709 -1 O ASP A 706 N ALA A 691 SHEET 3 AA3 4 VAL A 768 LEU A 777 -1 O ALA A 773 N LEU A 703 SHEET 4 AA3 4 VAL A 733 LEU A 740 -1 N LEU A 740 O LEU A 772 SSBOND 1 CYS A 632 CYS A 633 1555 4455 2.04 LINK OD2 ASP A 558 ZN ZN A 902 1555 1555 2.32 LINK C GLU A 589 N MSE A 590 1555 1555 1.33 LINK OE1 GLU A 589 ZN ZN A 901 1555 1555 2.67 LINK OE2 GLU A 589 ZN ZN A 901 1555 1555 2.65 LINK C MSE A 590 N VAL A 591 1555 1555 1.33 LINK ND1 HIS A 601 ZN ZN A 902 1555 1555 1.95 LINK C ASN A 648 N MSE A 649 1555 1555 1.33 LINK C MSE A 649 N PRO A 650 1555 1555 1.35 LINK C LEU A 652 N MSE A 653 1555 1555 1.33 LINK C MSE A 653 N THR A 654 1555 1555 1.33 LINK ND1 HIS A 655 ZN ZN A 903 1555 1555 1.91 LINK C ASP A 672 N MSE A 673 1555 1555 1.33 LINK C MSE A 673 N LEU A 674 1555 1555 1.33 LINK C ALA A 713 N MSE A 714 1555 1555 1.33 LINK C MSE A 714 N THR A 715 1555 1555 1.33 LINK ZN ZN A 901 O HOH A1033 1555 1555 2.51 LINK ZN ZN A 903 O HOH A1030 1555 1555 2.50 LINK ZN ZN A 903 O HOH A1031 1555 1555 2.34 LINK ZN ZN A 903 O HOH A1016 1555 1555 2.34 LINK ZN ZN A 904 O HOH A1027 1555 1555 2.61 LINK OE1 GLU A 748 ZN ZN A 902 1555 6566 2.66 LINK OE2 GLU A 748 ZN ZN A 902 1555 6566 2.03 LINK ZN ZN A 902 O HOH A1001 1555 6466 2.33 CISPEP 1 LEU A 740 PRO A 741 0 -2.68 SITE 1 AC1 3 GLU A 589 ASP A 672 HOH A1033 SITE 1 AC2 4 ASP A 558 HIS A 601 GLU A 748 HOH A1001 SITE 1 AC3 6 PRO A 650 HIS A 655 LYS A 658 HOH A1016 SITE 2 AC3 6 HOH A1030 HOH A1031 SITE 1 AC4 2 HIS A 623 HOH A1027 CRYST1 109.826 109.826 79.492 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012580 0.00000