HEADER ENDOCYTOSIS 08-JUL-15 5AWU TITLE CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN COMPLEX WITH AN TITLE 2 EPS15 FRAGMENT CONTAINING TWO DPF MOTIFS (YDPFKGSDPFA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3-CONTAINING GRB2-LIKE PROTEIN 3-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 552-828; COMPND 5 SYNONYM: ENDOPHILIN-3-INTERACTING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE 15; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: EPS15; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SGIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS, PROTEIN-PROTEIN INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIMADA,A.YAMAGUCHI,D.KOHDA REVDAT 3 08-NOV-23 5AWU 1 LINK REVDAT 2 26-FEB-20 5AWU 1 REMARK REVDAT 1 06-JUL-16 5AWU 0 JRNL AUTH A.SHIMADA,A.YAMAGUCHI,D.KOHDA JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF TWO CONSECUTIVE JRNL TITL 2 MUTUALLY INTERACTING DPF MOTIFS BY THE SGIP1 MU HOMOLOGY JRNL TITL 3 DOMAIN. JRNL REF SCI REP V. 6 19565 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26822536 JRNL DOI 10.1038/SREP19565 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 14087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6168 - 4.5789 0.99 2836 142 0.1840 0.2111 REMARK 3 2 4.5789 - 3.6354 1.00 2707 137 0.2028 0.2252 REMARK 3 3 3.6354 - 3.1761 1.00 2668 143 0.2218 0.3115 REMARK 3 4 3.1761 - 2.8858 1.00 2635 144 0.2684 0.2896 REMARK 3 5 2.8858 - 2.7000 0.96 2530 145 0.3064 0.3457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2191 REMARK 3 ANGLE : 1.182 2977 REMARK 3 CHIRALITY : 0.080 336 REMARK 3 PLANARITY : 0.007 385 REMARK 3 DIHEDRAL : 14.618 799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 559 THROUGH 601 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7613 11.1085 104.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.8362 T22: 0.8604 REMARK 3 T33: 0.5977 T12: 0.0711 REMARK 3 T13: -0.0475 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.3239 L22: 4.4139 REMARK 3 L33: 4.4473 L12: -2.2952 REMARK 3 L13: 1.5816 L23: -5.4910 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: 0.0850 S13: -0.1448 REMARK 3 S21: 0.8000 S22: -0.1727 S23: 0.0180 REMARK 3 S31: -1.0027 S32: -0.1277 S33: 0.2016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 602 THROUGH 625 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8917 -2.0648 106.6833 REMARK 3 T TENSOR REMARK 3 T11: 0.7578 T22: 0.5863 REMARK 3 T33: 0.5999 T12: 0.1351 REMARK 3 T13: -0.1306 T23: -0.1321 REMARK 3 L TENSOR REMARK 3 L11: 8.1868 L22: 5.9631 REMARK 3 L33: 8.7542 L12: 1.0611 REMARK 3 L13: -3.1527 L23: -1.2318 REMARK 3 S TENSOR REMARK 3 S11: 0.3843 S12: 0.5044 S13: -0.5877 REMARK 3 S21: -0.2647 S22: -0.4621 S23: 0.0181 REMARK 3 S31: 0.8963 S32: -0.0975 S33: -0.0352 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 626 THROUGH 648 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1737 -1.6708 105.0371 REMARK 3 T TENSOR REMARK 3 T11: 0.9797 T22: 0.7528 REMARK 3 T33: 0.7240 T12: 0.0995 REMARK 3 T13: -0.0831 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 5.3191 L22: 3.8896 REMARK 3 L33: 4.5388 L12: 4.2521 REMARK 3 L13: 4.7172 L23: 4.1997 REMARK 3 S TENSOR REMARK 3 S11: -0.7545 S12: 0.7763 S13: 0.2626 REMARK 3 S21: -1.7145 S22: 0.1497 S23: 0.5407 REMARK 3 S31: -1.4234 S32: 0.5947 S33: 0.2802 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 649 THROUGH 678 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5132 4.6357 118.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.8506 T22: 1.1125 REMARK 3 T33: 0.5477 T12: 0.1800 REMARK 3 T13: 0.1205 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 7.6771 L22: 4.2461 REMARK 3 L33: 6.8593 L12: -1.7690 REMARK 3 L13: -2.3894 L23: 2.1578 REMARK 3 S TENSOR REMARK 3 S11: -0.5645 S12: -2.1123 S13: 0.3650 REMARK 3 S21: 1.2500 S22: 0.6377 S23: 0.1589 REMARK 3 S31: -0.3686 S32: -1.0984 S33: -0.1606 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 679 THROUGH 722 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6311 26.0337 91.4565 REMARK 3 T TENSOR REMARK 3 T11: 0.8816 T22: 0.8192 REMARK 3 T33: 0.5621 T12: 0.1751 REMARK 3 T13: -0.0856 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 4.4933 L22: 2.8225 REMARK 3 L33: 4.6186 L12: 1.9687 REMARK 3 L13: 0.3712 L23: -2.9732 REMARK 3 S TENSOR REMARK 3 S11: 0.2086 S12: 0.5601 S13: -0.0393 REMARK 3 S21: -0.4483 S22: -0.0230 S23: 0.4113 REMARK 3 S31: -0.1706 S32: -0.0974 S33: -0.2679 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 723 THROUGH 794 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1522 35.0048 98.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.8351 T22: 0.8231 REMARK 3 T33: 0.5411 T12: 0.1561 REMARK 3 T13: -0.0025 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 6.1186 L22: 9.2132 REMARK 3 L33: 2.8499 L12: -3.0107 REMARK 3 L13: -0.7090 L23: -1.2406 REMARK 3 S TENSOR REMARK 3 S11: 0.4141 S12: -0.2179 S13: 0.3517 REMARK 3 S21: 0.1295 S22: -0.2570 S23: 0.7454 REMARK 3 S31: -0.5812 S32: -0.2975 S33: -0.1161 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 795 THROUGH 828 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1438 7.4362 103.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.7104 T22: 0.7487 REMARK 3 T33: 0.6066 T12: -0.1151 REMARK 3 T13: -0.0762 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 4.1812 L22: 2.8407 REMARK 3 L33: 3.4108 L12: -3.3830 REMARK 3 L13: 1.4485 L23: -2.2531 REMARK 3 S TENSOR REMARK 3 S11: 0.2484 S12: 0.1800 S13: -0.8403 REMARK 3 S21: -0.2183 S22: -0.0739 S23: 0.7032 REMARK 3 S31: 0.2741 S32: -0.5770 S33: -0.0884 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 644 THROUGH 654 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8368 7.6258 116.2122 REMARK 3 T TENSOR REMARK 3 T11: 1.0921 T22: 1.2329 REMARK 3 T33: 1.2875 T12: 0.4101 REMARK 3 T13: 0.2755 T23: 0.2631 REMARK 3 L TENSOR REMARK 3 L11: 3.6947 L22: 3.2743 REMARK 3 L33: 8.9247 L12: 3.0967 REMARK 3 L13: -5.6783 L23: -4.9793 REMARK 3 S TENSOR REMARK 3 S11: 0.6864 S12: 1.0548 S13: 1.8711 REMARK 3 S21: 1.2165 S22: 0.3046 S23: 3.5334 REMARK 3 S31: -0.4030 S32: -0.5994 S33: -0.9402 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1300000100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14137 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5AWR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, ZINC ACETATE, SODIUM REMARK 280 ACETATE, SODIUM IODIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.78100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.78100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.78100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.78100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.78100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.78100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.78100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.78100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 547 REMARK 465 PRO A 548 REMARK 465 LEU A 549 REMARK 465 GLY A 550 REMARK 465 SER A 551 REMARK 465 LEU A 552 REMARK 465 THR A 553 REMARK 465 MET A 554 REMARK 465 GLY A 555 REMARK 465 ALA A 556 REMARK 465 GLN A 557 REMARK 465 ASP A 558 REMARK 465 ASP A 634 REMARK 465 ASN A 635 REMARK 465 THR A 636 REMARK 465 GLN A 637 REMARK 465 ASN A 638 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 620 O SER A 679 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS A 633 SG CYS A 633 3545 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 641 -10.50 -140.31 REMARK 500 GLN A 665 48.90 -109.61 REMARK 500 GLN A 681 73.46 -104.26 REMARK 500 THR A 734 -51.06 -124.84 REMARK 500 ALA A 743 -167.79 -125.60 REMARK 500 GLU A 779 -77.44 -105.58 REMARK 500 PHE B 653 66.20 -114.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 601 ND1 REMARK 620 2 GLU A 748 OE2 87.1 REMARK 620 3 HOH A1004 O 84.5 166.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 655 ND1 REMARK 620 2 HOH A1007 O 124.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AWR RELATED DB: PDB REMARK 900 THE SAME PROTEINS REMARK 900 RELATED ID: 5AWS RELATED DB: PDB REMARK 900 ONE OF THE SAME PROTEINS REMARK 900 RELATED ID: 5AWT RELATED DB: PDB REMARK 900 ONE OF THE SAME PROTEINS AND A DIFFERENT PART OF THE OTHER SAME REMARK 900 PROTEIN DBREF 5AWU A 552 828 UNP Q9BQI5 SGIP1_HUMAN 552 828 DBREF 5AWU B 644 654 PDB 5AWU 5AWU 644 654 SEQADV 5AWU GLY A 547 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWU PRO A 548 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWU LEU A 549 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWU GLY A 550 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWU SER A 551 UNP Q9BQI5 EXPRESSION TAG SEQRES 1 A 282 GLY PRO LEU GLY SER LEU THR MET GLY ALA GLN ASP THR SEQRES 2 A 282 LEU PRO VAL ALA ALA ALA PHE THR GLU THR VAL ASN ALA SEQRES 3 A 282 TYR PHE LYS GLY ALA ASP PRO SER LYS CYS ILE VAL LYS SEQRES 4 A 282 ILE THR GLY GLU MET VAL LEU SER PHE PRO ALA GLY ILE SEQRES 5 A 282 THR ARG HIS PHE ALA ASN ASN PRO SER PRO ALA ALA LEU SEQRES 6 A 282 THR PHE ARG VAL ILE ASN PHE SER ARG LEU GLU HIS VAL SEQRES 7 A 282 LEU PRO ASN PRO GLN LEU LEU CYS CYS ASP ASN THR GLN SEQRES 8 A 282 ASN ASP ALA ASN THR LYS GLU PHE TRP VAL ASN MET PRO SEQRES 9 A 282 ASN LEU MET THR HIS LEU LYS LYS VAL SER GLU GLN LYS SEQRES 10 A 282 PRO GLN ALA THR TYR TYR ASN VAL ASP MET LEU LYS TYR SEQRES 11 A 282 GLN VAL SER ALA GLN GLY ILE GLN SER THR PRO LEU ASN SEQRES 12 A 282 LEU ALA VAL ASN TRP ARG CYS GLU PRO SER SER THR ASP SEQRES 13 A 282 LEU ARG ILE ASP TYR LYS TYR ASN THR ASP ALA MET THR SEQRES 14 A 282 THR ALA VAL ALA LEU ASN ASN VAL GLN PHE LEU VAL PRO SEQRES 15 A 282 ILE ASP GLY GLY VAL THR LYS LEU GLN ALA VAL LEU PRO SEQRES 16 A 282 PRO ALA VAL TRP ASN ALA GLU GLN GLN ARG ILE LEU TRP SEQRES 17 A 282 LYS ILE PRO ASP ILE SER GLN LYS SER GLU ASN GLY GLY SEQRES 18 A 282 VAL GLY SER LEU LEU ALA ARG PHE GLN LEU SER GLU GLY SEQRES 19 A 282 PRO SER LYS PRO SER PRO LEU VAL VAL GLN PHE THR SER SEQRES 20 A 282 GLU GLY SER THR LEU SER GLY CYS ASP ILE GLU LEU VAL SEQRES 21 A 282 GLY ALA GLY TYR ARG PHE SER LEU ILE LYS LYS ARG PHE SEQRES 22 A 282 ALA ALA GLY LYS TYR LEU ALA ASP ASN SEQRES 1 B 11 TYR ASP PRO PHE LYS GLY SER ASP PRO PHE ALA HET ZN A 901 1 HET ZN A 902 1 HET ZN A 903 1 HET ZN A 904 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *7(H2 O) HELIX 1 AA1 ASP A 578 CYS A 582 5 5 HELIX 2 AA2 GLY A 597 PHE A 602 1 6 HELIX 3 AA3 ASN A 648 LYS A 663 1 16 HELIX 4 AA4 GLN A 681 THR A 686 5 6 HELIX 5 AA5 THR A 711 MET A 714 5 4 HELIX 6 AA6 SER A 763 GLY A 766 5 4 SHEET 1 AA1 9 LEU A 621 PRO A 626 0 SHEET 2 AA1 9 TYR A 668 VAL A 678 -1 O LYS A 675 N LEU A 625 SHEET 3 AA1 9 ILE A 583 PRO A 595 -1 N LEU A 592 O VAL A 671 SHEET 4 AA1 9 LEU A 560 LYS A 575 -1 N ALA A 563 O SER A 593 SHEET 5 AA1 9 TYR A 810 ASP A 827 1 O LYS A 816 N ALA A 564 SHEET 6 AA1 9 LEU A 787 GLU A 794 -1 N PHE A 791 O ALA A 821 SHEET 7 AA1 9 LEU A 720 PRO A 728 -1 N ASN A 721 O THR A 792 SHEET 8 AA1 9 ARG A 751 ILE A 759 -1 O ILE A 759 N LEU A 720 SHEET 9 AA1 9 VAL A 744 ASN A 746 -1 N ASN A 746 O ARG A 751 SHEET 1 AA2 3 THR A 642 TRP A 646 0 SHEET 2 AA2 3 THR A 612 ILE A 616 -1 N PHE A 613 O PHE A 645 SHEET 3 AA2 3 ASP A 802 VAL A 806 -1 O VAL A 806 N THR A 612 SHEET 1 AA3 4 LEU A 688 GLU A 697 0 SHEET 2 AA3 4 SER A 700 TYR A 709 -1 O ASP A 706 N ALA A 691 SHEET 3 AA3 4 VAL A 768 LEU A 777 -1 O ALA A 773 N LEU A 703 SHEET 4 AA3 4 VAL A 733 LEU A 740 -1 N LYS A 735 O GLN A 776 LINK OE2 GLU A 589 ZN ZN A 904 1555 1555 2.54 LINK ND1 HIS A 601 ZN ZN A 903 1555 1555 1.98 LINK ND1 HIS A 623 ZN ZN A 902 1555 4555 2.54 LINK ND1 HIS A 655 ZN ZN A 901 1555 1555 2.21 LINK OE2 GLU A 748 ZN ZN A 903 1555 5558 1.89 LINK ZN ZN A 901 O HOH A1007 1555 1555 2.62 LINK ZN ZN A 903 O HOH A1004 1555 5548 2.39 CISPEP 1 PRO A 606 SER A 607 0 6.17 CISPEP 2 LEU A 740 PRO A 741 0 -4.38 CISPEP 3 GLY A 780 PRO A 781 0 0.39 CISPEP 4 LYS B 648 GLY B 649 0 2.35 SITE 1 AC1 3 HIS A 655 HOH A1005 HOH A1007 SITE 1 AC2 3 HIS A 623 ASP A 639 THR A 642 SITE 1 AC3 1 HIS A 601 SITE 1 AC4 2 GLU A 589 ASP A 672 CRYST1 109.562 109.562 80.094 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012485 0.00000