HEADER HYDROLASE 10-JUL-15 5AWX TITLE CRYSTAL STRUCTURE OF HUMAN PTPRZ D1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE ZETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1698-1993; COMPND 5 SYNONYM: R-PTP-ZETA,PROTEIN-TYROSINE PHOSPHATASE RECEPTOR TYPE Z COMPND 6 POLYPEPTIDE 1,PROTEIN-TYROSINE PHOSPHATASE RECEPTOR TYPE Z COMPND 7 POLYPEPTIDE 2,R-PTP-ZETA-2; COMPND 8 EC: 3.1.3.48; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRZ1, HTPZP2, PTPRZ, PTPRZ2, PTPZ; SOURCE 6 EXPRESSION_SYSTEM: BOMBYX MORI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7091 KEYWDS PROTEIN TYROSINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SUGAWARA REVDAT 3 08-NOV-23 5AWX 1 REMARK REVDAT 2 09-MAR-16 5AWX 1 JRNL REVDAT 1 17-FEB-16 5AWX 0 JRNL AUTH A.FUJIKAWA,A.NAGAHIRA,H.SUGAWARA,K.ISHII,S.IMAJO, JRNL AUTH 2 M.MATSUMOTO,K.KUBOYAMA,R.SUZUKI,N.TANGA,M.NODA,S.UCHIYAMA, JRNL AUTH 3 T.TOMOO,A.OGATA,M.MASUMURA,M.NODA JRNL TITL SMALL-MOLECULE INHIBITION OF PTPRZ REDUCES TUMOR GROWTH IN A JRNL TITL 2 RAT MODEL OF GLIOBLASTOMA JRNL REF SCI REP V. 6 20473 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26857455 JRNL DOI 10.1038/SREP20473 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1547 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.27000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2347 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2204 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3190 ; 1.977 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5053 ; 1.006 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 6.718 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;37.477 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;15.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2671 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 577 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 1.651 ; 1.469 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1132 ; 1.621 ; 1.467 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 2.307 ; 2.190 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1413 ; 2.308 ; 2.191 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 2.436 ; 1.733 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1214 ; 2.436 ; 1.733 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1777 ; 3.743 ; 2.493 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2865 ; 5.803 ;13.140 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2764 ; 5.622 ;12.624 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1696 A 1995 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0556 -0.7811 1.1515 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0049 REMARK 3 T33: 0.0093 T12: 0.0109 REMARK 3 T13: 0.0051 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7114 L22: 0.9363 REMARK 3 L33: 0.6419 L12: 0.1783 REMARK 3 L13: 0.0472 L23: 0.2243 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0128 S13: 0.0605 REMARK 3 S21: -0.0122 S22: -0.0008 S23: 0.0533 REMARK 3 S31: -0.1081 S32: -0.0316 S33: -0.0197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1300000106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29084 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 31.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3QCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG8000, 20% (V/V) ETHYLENE REMARK 280 GLYCOL, 30MM SODIUM FLUORIDE, 30MM SODIUM BROMIDE, 30MM SODIUM REMARK 280 IODIDE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.32050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.27850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.12250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.27850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.32050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.12250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1878 REMARK 465 LYS A 1879 REMARK 465 GLY A 1880 REMARK 465 SER A 1881 REMARK 465 GLN A 1882 REMARK 465 LYS A 1883 REMARK 465 GLY A 1884 REMARK 465 ARG A 1885 REMARK 465 PRO A 1886 REMARK 465 SER A 1887 REMARK 465 LYS A 1996 REMARK 465 GLU A 1997 REMARK 465 THR A 1998 REMARK 465 GLU A 1999 REMARK 465 VAL A 2000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3157 O HOH A 3324 2.05 REMARK 500 O HOH A 3319 O HOH A 3328 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3252 O HOH A 3307 4545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A1760 CG1 - CB - CG2 ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A1766 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A1835 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A1835 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A1969 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1792 58.04 19.28 REMARK 500 CYS A1933 -119.92 -132.56 REMARK 500 SER A1934 -65.26 -99.50 REMARK 500 VAL A1976 87.25 62.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 1994 SER A 1995 148.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 3004 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE CORRESPONDS TO THE ISOFORM 2 FOUND IN UNP P23471. DBREF 5AWX A 1698 2000 UNP P23471 PTPRZ_HUMAN 1698 1993 SEQADV 5AWX GLY A 1696 UNP P23471 EXPRESSION TAG SEQADV 5AWX PRO A 1697 UNP P23471 EXPRESSION TAG SEQRES 1 A 298 GLY PRO ALA ILE PRO ILE LYS HIS PHE PRO LYS HIS VAL SEQRES 2 A 298 ALA ASP LEU HIS ALA SER SER GLY PHE THR GLU GLU PHE SEQRES 3 A 298 GLU GLU VAL GLN SER CYS THR VAL ASP LEU GLY ILE THR SEQRES 4 A 298 ALA ASP SER SER ASN HIS PRO ASP ASN LYS HIS LYS ASN SEQRES 5 A 298 ARG TYR ILE ASN ILE VAL ALA TYR ASP HIS SER ARG VAL SEQRES 6 A 298 LYS LEU ALA GLN LEU ALA GLU LYS ASP GLY LYS LEU THR SEQRES 7 A 298 ASP TYR ILE ASN ALA ASN TYR VAL ASP GLY TYR ASN ARG SEQRES 8 A 298 PRO LYS ALA TYR ILE ALA ALA GLN GLY PRO LEU LYS SER SEQRES 9 A 298 THR ALA GLU ASP PHE TRP ARG MET ILE TRP GLU HIS ASN SEQRES 10 A 298 VAL GLU VAL ILE VAL MET ILE THR ASN LEU VAL GLU LYS SEQRES 11 A 298 GLY ARG ARG LYS CYS ASP GLN TYR TRP PRO ALA ASP GLY SEQRES 12 A 298 SER GLU GLU TYR GLY ASN PHE LEU VAL THR GLN LYS SER SEQRES 13 A 298 VAL GLN VAL LEU ALA TYR TYR THR VAL ARG ASN PHE THR SEQRES 14 A 298 LEU ARG ASN THR LYS ILE LYS LYS GLY SER GLN LYS GLY SEQRES 15 A 298 ARG PRO SER GLY ARG VAL VAL THR GLN TYR HIS TYR THR SEQRES 16 A 298 GLN TRP PRO ASP MET GLY VAL PRO GLU TYR SER LEU PRO SEQRES 17 A 298 VAL LEU THR PHE VAL ARG LYS ALA ALA TYR ALA LYS ARG SEQRES 18 A 298 HIS ALA VAL GLY PRO VAL VAL VAL HIS CYS SER ALA GLY SEQRES 19 A 298 VAL GLY ARG THR GLY THR TYR ILE VAL LEU ASP SER MET SEQRES 20 A 298 LEU GLN GLN ILE GLN HIS GLU GLY THR VAL ASN ILE PHE SEQRES 21 A 298 GLY PHE LEU LYS HIS ILE ARG SER GLN ARG ASN TYR LEU SEQRES 22 A 298 VAL GLN THR GLU GLU GLN TYR VAL PHE ILE HIS ASP THR SEQRES 23 A 298 LEU VAL GLU ALA ILE LEU SER LYS GLU THR GLU VAL HET BR A3001 1 HET BR A3002 1 HET BR A3003 1 HET BR A3004 1 HETNAM BR BROMIDE ION FORMUL 2 BR 4(BR 1-) FORMUL 6 HOH *247(H2 O) HELIX 1 AA1 HIS A 1703 SER A 1714 1 12 HELIX 2 AA2 GLY A 1716 CYS A 1734 1 12 HELIX 3 AA3 HIS A 1747 ASN A 1754 5 8 HELIX 4 AA4 LEU A 1804 SER A 1806 5 3 HELIX 5 AA5 THR A 1807 HIS A 1818 1 12 HELIX 6 AA6 TYR A 1907 LYS A 1922 1 16 HELIX 7 AA7 VAL A 1937 GLY A 1957 1 21 HELIX 8 AA8 ASN A 1960 ARG A 1969 1 10 HELIX 9 AA9 THR A 1978 SER A 1995 1 18 SHEET 1 AA1 2 ILE A1699 PRO A1700 0 SHEET 2 AA1 2 THR A1958 VAL A1959 -1 O VAL A1959 N ILE A1699 SHEET 1 AA2 9 ARG A1766 LYS A1768 0 SHEET 2 AA2 9 TYR A1782 GLY A1790 -1 O ALA A1785 N VAL A1767 SHEET 3 AA2 9 ARG A1793 ALA A1800 -1 O ALA A1799 N ASN A1786 SHEET 4 AA2 9 VAL A1929 HIS A1932 1 O VAL A1931 N ALA A1800 SHEET 5 AA2 9 VAL A1822 MET A1825 1 N VAL A1824 O VAL A1930 SHEET 6 AA2 9 ARG A1889 TYR A1896 1 O TYR A1894 N ILE A1823 SHEET 7 AA2 9 TYR A1865 ASN A1874 -1 N THR A1866 O HIS A1895 SHEET 8 AA2 9 PHE A1852 VAL A1861 -1 N LEU A1853 O ARG A1873 SHEET 9 AA2 9 SER A1846 TYR A1849 -1 N GLU A1847 O VAL A1854 SHEET 1 AA3 2 VAL A1830 GLU A1831 0 SHEET 2 AA3 2 ARG A1834 ARG A1835 -1 O ARG A1834 N GLU A1831 SITE 1 AC1 3 LYS A1836 SER A1934 HOH A3273 SITE 1 AC2 1 GLN A1971 SITE 1 AC3 1 ASN A1851 SITE 1 AC4 3 ARG A1755 ASP A1838 HOH A3240 CRYST1 54.641 72.245 90.557 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018301 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011043 0.00000