HEADER OXIDOREDUCTASE 22-AUG-15 5AYL TITLE CRYSTAL STRUCTURE OF ERDJ5 FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY C MEMBER 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-793; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM DNA J DOMAIN-CONTAINING PROTEIN 5, COMPND 6 ERDJ5,ENDOPLASMIC RETICULUM DNAJ-PDI FUSION PROTEIN 1,J DOMAIN- COMPND 7 CONTAINING PROTEIN DISULFIDE ISOMERASE-LIKE PROTEIN,JPDI; COMPND 8 EC: 1.8.4.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNAJC10, ERDJ5, JPDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PDI FAMILY, THIOREDOXIN, ENDOPLASMIC RETICULUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,K.MAEGAWA,K.INABA REVDAT 3 08-NOV-23 5AYL 1 HETSYN REVDAT 2 26-FEB-20 5AYL 1 REMARK REVDAT 1 15-FEB-17 5AYL 0 JRNL AUTH K.MAEGAWA,S.WATANABE,M.OKUMURA,K.NOI,M.INOUE,R.USHIODA, JRNL AUTH 2 T.OGURA,K.NAGATA,K.INABA JRNL TITL HIGHLY DYNAMIC NATURE OF ERDJ5 IS ESSENTIAL FOR ENHANCEMENT JRNL TITL 2 OF THE ER ASSOCIATED DEGRADATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 66683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0905 - 6.9107 0.99 2652 155 0.1632 0.1428 REMARK 3 2 6.9107 - 5.4901 1.00 2667 154 0.1982 0.2862 REMARK 3 3 5.4901 - 4.7975 1.00 2706 138 0.1641 0.1840 REMARK 3 4 4.7975 - 4.3595 1.00 2700 144 0.1423 0.1655 REMARK 3 5 4.3595 - 4.0474 1.00 2694 144 0.1444 0.1686 REMARK 3 6 4.0474 - 3.8089 1.00 2663 136 0.1618 0.1964 REMARK 3 7 3.8089 - 3.6183 1.00 2710 141 0.1710 0.2059 REMARK 3 8 3.6183 - 3.4609 1.00 2684 116 0.1737 0.2153 REMARK 3 9 3.4609 - 3.3278 1.00 2730 134 0.1783 0.2343 REMARK 3 10 3.3278 - 3.2130 1.00 2699 151 0.1926 0.2554 REMARK 3 11 3.2130 - 3.1126 1.00 2706 136 0.1951 0.2346 REMARK 3 12 3.1126 - 3.0236 1.00 2661 140 0.2084 0.2510 REMARK 3 13 3.0236 - 2.9441 1.00 2678 171 0.2102 0.2735 REMARK 3 14 2.9441 - 2.8722 1.00 2661 149 0.2165 0.3004 REMARK 3 15 2.8722 - 2.8070 1.00 2632 167 0.2341 0.3211 REMARK 3 16 2.8070 - 2.7473 1.00 2704 111 0.2371 0.2971 REMARK 3 17 2.7473 - 2.6923 1.00 2697 136 0.2342 0.2860 REMARK 3 18 2.6923 - 2.6415 1.00 2716 122 0.2429 0.3093 REMARK 3 19 2.6415 - 2.5944 0.99 2667 153 0.2410 0.3215 REMARK 3 20 2.5944 - 2.5504 0.98 2622 149 0.2317 0.2670 REMARK 3 21 2.5504 - 2.5093 0.96 2576 145 0.2459 0.3202 REMARK 3 22 2.5093 - 2.4707 0.93 2540 106 0.2677 0.3403 REMARK 3 23 2.4707 - 2.4343 0.88 2379 114 0.2707 0.3696 REMARK 3 24 2.4343 - 2.4000 0.82 2245 82 0.2999 0.3673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6063 REMARK 3 ANGLE : 0.744 8233 REMARK 3 CHIRALITY : 0.029 882 REMARK 3 PLANARITY : 0.004 1065 REMARK 3 DIHEDRAL : 15.525 2157 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5535 11.7316 25.0496 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.3690 REMARK 3 T33: 0.2260 T12: 0.0606 REMARK 3 T13: -0.0546 T23: 0.0986 REMARK 3 L TENSOR REMARK 3 L11: 0.9948 L22: 0.6781 REMARK 3 L33: 0.2891 L12: 0.0071 REMARK 3 L13: -0.3728 L23: 0.4966 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: 0.5859 S13: -0.0529 REMARK 3 S21: -0.0378 S22: 0.0872 S23: -0.0090 REMARK 3 S31: -0.4837 S32: -0.2399 S33: 0.0123 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 233) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4907 -6.5801 42.5166 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.1584 REMARK 3 T33: 0.2335 T12: -0.0014 REMARK 3 T13: -0.0410 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.6650 L22: 1.4204 REMARK 3 L33: 1.8002 L12: -0.7409 REMARK 3 L13: 0.0259 L23: -0.2019 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.1170 S13: -0.0975 REMARK 3 S21: -0.0480 S22: -0.0387 S23: 0.3188 REMARK 3 S31: 0.0966 S32: -0.0839 S33: -0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 347) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9110 -5.9232 77.4203 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.2429 REMARK 3 T33: 0.2592 T12: 0.0182 REMARK 3 T13: 0.0058 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 0.7661 L22: 1.4090 REMARK 3 L33: 1.3352 L12: -0.3332 REMARK 3 L13: 0.1145 L23: 0.2274 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.1081 S13: 0.0237 REMARK 3 S21: 0.0144 S22: -0.0131 S23: 0.1459 REMARK 3 S31: -0.0557 S32: -0.1699 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 348 THROUGH 453) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9285 9.6223 58.9873 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.2307 REMARK 3 T33: 0.1566 T12: -0.0076 REMARK 3 T13: -0.0084 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.1215 L22: 1.7816 REMARK 3 L33: 1.6541 L12: 0.1255 REMARK 3 L13: -0.0899 L23: -0.7085 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.1453 S13: -0.0738 REMARK 3 S21: -0.0415 S22: -0.0332 S23: -0.0824 REMARK 3 S31: -0.0593 S32: 0.2528 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 555) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9892 9.5477 37.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.1695 REMARK 3 T33: 0.2078 T12: 0.0111 REMARK 3 T13: 0.0233 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.3754 L22: 0.9119 REMARK 3 L33: 0.7939 L12: -0.0693 REMARK 3 L13: -0.3585 L23: -0.1982 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.0075 S13: -0.0487 REMARK 3 S21: -0.1859 S22: 0.0347 S23: -0.2247 REMARK 3 S31: 0.0296 S32: -0.0040 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 556 THROUGH 668) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5637 6.1320 10.9226 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.2406 REMARK 3 T33: 0.2553 T12: -0.0448 REMARK 3 T13: 0.0322 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.5752 L22: 2.3215 REMARK 3 L33: 2.5957 L12: 0.0766 REMARK 3 L13: 0.6725 L23: 0.2453 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: 0.1285 S13: 0.0757 REMARK 3 S21: -0.1147 S22: 0.1166 S23: -0.1242 REMARK 3 S31: -0.2387 S32: 0.2092 S33: 0.0013 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 669 THROUGH 783) REMARK 3 ORIGIN FOR THE GROUP (A): 65.4194 -18.6775 4.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.2231 T22: 0.2680 REMARK 3 T33: 0.2177 T12: -0.0660 REMARK 3 T13: 0.0555 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 2.5105 L22: 1.7076 REMARK 3 L33: 1.9243 L12: 1.1435 REMARK 3 L13: -1.9445 L23: 0.1410 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.2199 S13: -0.1550 REMARK 3 S21: 0.0500 S22: 0.0352 S23: -0.0714 REMARK 3 S31: -0.2095 S32: 0.0121 S33: 0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5AYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1300000199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 OR 8.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12600 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3APO REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, CYSTIN, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.78200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 MET A 31 REMARK 465 THR A 32 REMARK 465 PRO A 71 REMARK 465 ASN A 72 REMARK 465 ASN A 107 REMARK 465 GLN A 108 REMARK 465 GLY A 109 REMARK 465 GLY A 110 REMARK 465 SER A 642 REMARK 465 LYS A 643 REMARK 465 SER A 784 REMARK 465 GLN A 785 REMARK 465 VAL A 786 REMARK 465 LYS A 787 REMARK 465 ARG A 788 REMARK 465 ASN A 789 REMARK 465 LYS A 790 REMARK 465 ASP A 791 REMARK 465 GLU A 792 REMARK 465 LEU A 793 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LEU A 62 CG CD1 CD2 REMARK 470 ASN A 69 CG OD1 ND2 REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ASP A 106 CG OD1 OD2 REMARK 470 SER A 159 OG REMARK 470 HIS A 160 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 298 CG OD1 OD2 REMARK 470 THR A 307 OG1 CG2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 ASP A 360 CG OD1 OD2 REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 ASN A 376 CG OD1 ND2 REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 LYS A 438 CG CD CE NZ REMARK 470 GLN A 461 CG CD OE1 NE2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 470 GLU A 469 CG CD OE1 OE2 REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 SER A 641 OG REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 GLU A 752 CG CD OE1 OE2 REMARK 470 ARG A 753 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 782 CG CD1 CD2 REMARK 470 GLN A 783 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 161 -166.91 54.83 REMARK 500 HIS A 162 -29.59 60.41 REMARK 500 ARG A 220 41.09 -92.91 REMARK 500 ASN A 321 -167.09 -160.28 REMARK 500 GLU A 359 -60.36 76.04 REMARK 500 PHE A 373 77.82 -118.47 REMARK 500 ALA A 406 79.03 -160.51 REMARK 500 SER A 453 -168.47 -117.27 REMARK 500 SER A 466 65.52 -150.43 REMARK 500 HIS A 511 70.04 -101.75 REMARK 500 HIS A 575 -125.04 62.68 REMARK 500 TYR A 619 51.78 -116.79 REMARK 500 VAL A 684 -65.84 -96.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AYK RELATED DB: PDB DBREF 5AYL A 32 793 UNP Q9DC23 DJC10_MOUSE 32 793 SEQADV 5AYL MET A 11 UNP Q9DC23 INITIATING METHIONINE SEQADV 5AYL GLY A 12 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL SER A 13 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL SER A 14 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL HIS A 15 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL HIS A 16 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL HIS A 17 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL HIS A 18 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL HIS A 19 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL HIS A 20 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL SER A 21 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL SER A 22 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL GLY A 23 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL LEU A 24 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL VAL A 25 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL PRO A 26 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL ARG A 27 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL GLY A 28 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL SER A 29 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL HIS A 30 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL MET A 31 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYL SER A 158 UNP Q9DC23 CYS 158 ENGINEERED MUTATION SEQADV 5AYL SER A 161 UNP Q9DC23 CYS 161 ENGINEERED MUTATION SEQADV 5AYL VAL A 399 UNP Q9DC23 GLY 399 ENGINEERED MUTATION SEQADV 5AYL SER A 419 UNP Q9DC23 CYS 419 ENGINEERED MUTATION SEQADV 5AYL SER A 480 UNP Q9DC23 CYS 480 ENGINEERED MUTATION SEQADV 5AYL SER A 483 UNP Q9DC23 CYS 483 ENGINEERED MUTATION SEQADV 5AYL SER A 588 UNP Q9DC23 CYS 588 ENGINEERED MUTATION SEQADV 5AYL SER A 591 UNP Q9DC23 CYS 591 ENGINEERED MUTATION SEQADV 5AYL SER A 700 UNP Q9DC23 CYS 700 ENGINEERED MUTATION SEQADV 5AYL SER A 703 UNP Q9DC23 CYS 703 ENGINEERED MUTATION SEQRES 1 A 783 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 783 LEU VAL PRO ARG GLY SER HIS MET THR ASP GLN ASN PHE SEQRES 3 A 783 TYR SER LEU LEU GLY VAL SER LYS THR ALA SER SER ARG SEQRES 4 A 783 GLU ILE ARG GLN ALA PHE LYS LYS LEU ALA LEU LYS LEU SEQRES 5 A 783 HIS PRO ASP LYS ASN PRO ASN ASN PRO ASN ALA HIS GLY SEQRES 6 A 783 ASP PHE LEU LYS ILE ASN ARG ALA TYR GLU VAL LEU LYS SEQRES 7 A 783 ASP GLU ASP LEU ARG LYS LYS TYR ASP LYS TYR GLY GLU SEQRES 8 A 783 LYS GLY LEU GLU ASP ASN GLN GLY GLY GLN TYR GLU SER SEQRES 9 A 783 TRP SER TYR TYR ARG TYR ASP PHE GLY ILE TYR ASP ASP SEQRES 10 A 783 ASP PRO GLU ILE ILE THR LEU GLU ARG ARG GLU PHE ASP SEQRES 11 A 783 ALA ALA VAL ASN SER GLY GLU LEU TRP PHE VAL ASN PHE SEQRES 12 A 783 TYR SER PRO GLY SER SER HIS SER HIS ASP LEU ALA PRO SEQRES 13 A 783 THR TRP ARG GLU PHE ALA LYS GLU VAL ASP GLY LEU LEU SEQRES 14 A 783 ARG ILE GLY ALA VAL ASN CYS GLY ASP ASP ARG MET LEU SEQRES 15 A 783 CYS ARG MET LYS GLY VAL ASN SER TYR PRO SER LEU PHE SEQRES 16 A 783 ILE PHE ARG SER GLY MET ALA ALA VAL LYS TYR ASN GLY SEQRES 17 A 783 ASP ARG SER LYS GLU SER LEU VAL ALA PHE ALA MET GLN SEQRES 18 A 783 HIS VAL ARG SER THR VAL THR GLU LEU SER THR GLY ASN SEQRES 19 A 783 PHE VAL ASN ALA ILE GLU THR ALA PHE ALA ALA GLY VAL SEQRES 20 A 783 GLY TRP LEU ILE THR PHE CYS SER LYS GLY GLU ASP CYS SEQRES 21 A 783 LEU THR SER GLN THR ARG LEU ARG LEU SER GLY MET LEU SEQRES 22 A 783 ASP GLY LEU VAL ASN VAL GLY TRP VAL ASP CYS ASP ALA SEQRES 23 A 783 GLN ASP SER LEU CYS LYS SER LEU ASP THR THR ALA SER SEQRES 24 A 783 THR THR ALA TYR PHE PRO PRO GLY ALA THR LEU ASN ASP SEQRES 25 A 783 ARG GLU LYS SER SER VAL LEU PHE LEU ASN SER LEU ASP SEQRES 26 A 783 ALA LYS GLU ILE TYR MET GLU ILE ILE HIS ASN LEU PRO SEQRES 27 A 783 ASP PHE GLU LEU LEU SER ALA ASN GLN LEU GLU ASP ARG SEQRES 28 A 783 LEU ALA HIS HIS ARG TRP LEU VAL PHE PHE HIS PHE GLY SEQRES 29 A 783 LYS ASN GLU ASN ALA ASN ASP PRO GLU LEU LYS LYS LEU SEQRES 30 A 783 LYS THR LEU LEU LYS ASN GLU HIS ILE GLN VAL VAL ARG SEQRES 31 A 783 PHE ASP CYS SER SER ALA PRO GLY ILE CYS SER ASP LEU SEQRES 32 A 783 TYR VAL PHE GLN PRO SER LEU ALA VAL PHE LYS GLY GLN SEQRES 33 A 783 GLY THR LYS GLU TYR GLU ILE HIS HIS GLY LYS LYS ILE SEQRES 34 A 783 LEU TYR ASP ILE LEU ALA PHE ALA LYS GLU SER VAL ASN SEQRES 35 A 783 SER HIS VAL THR THR LEU GLY PRO GLN ASN PHE PRO ALA SEQRES 36 A 783 SER ASP LYS GLU PRO TRP LEU VAL ASP PHE PHE ALA PRO SEQRES 37 A 783 TRP SER PRO PRO SER ARG ALA LEU LEU PRO GLU LEU ARG SEQRES 38 A 783 LYS ALA SER THR LEU LEU TYR GLY GLN LEU LYS VAL GLY SEQRES 39 A 783 THR LEU ASP CYS THR ILE HIS GLU GLY LEU CYS ASN MET SEQRES 40 A 783 TYR ASN ILE GLN ALA TYR PRO THR THR VAL VAL PHE ASN SEQRES 41 A 783 GLN SER SER ILE HIS GLU TYR GLU GLY HIS HIS SER ALA SEQRES 42 A 783 GLU GLN ILE LEU GLU PHE ILE GLU ASP LEU ARG ASN PRO SEQRES 43 A 783 SER VAL VAL SER LEU THR PRO SER THR PHE ASN GLU LEU SEQRES 44 A 783 VAL LYS GLN ARG LYS HIS ASP GLU VAL TRP MET VAL ASP SEQRES 45 A 783 PHE TYR SER PRO TRP SER HIS PRO SER GLN VAL LEU MET SEQRES 46 A 783 PRO GLU TRP LYS ARG MET ALA ARG THR LEU THR GLY LEU SEQRES 47 A 783 ILE ASN VAL GLY SER VAL ASP CYS GLN GLN TYR HIS SER SEQRES 48 A 783 PHE CYS THR GLN GLU ASN VAL GLN ARG TYR PRO GLU ILE SEQRES 49 A 783 ARG PHE TYR PRO GLN LYS SER SER LYS ALA TYR GLN TYR SEQRES 50 A 783 HIS SER TYR ASN GLY TRP ASN ARG ASP ALA TYR SER LEU SEQRES 51 A 783 ARG SER TRP GLY LEU GLY PHE LEU PRO GLN ALA SER ILE SEQRES 52 A 783 ASP LEU THR PRO GLN THR PHE ASN GLU LYS VAL LEU GLN SEQRES 53 A 783 GLY LYS THR HIS TRP VAL VAL ASP PHE TYR ALA PRO TRP SEQRES 54 A 783 SER GLY PRO SER GLN ASN PHE ALA PRO GLU PHE GLU LEU SEQRES 55 A 783 LEU ALA ARG MET ILE LYS GLY LYS VAL ARG ALA GLY LYS SEQRES 56 A 783 VAL ASP CYS GLN ALA TYR PRO GLN THR CYS GLN LYS ALA SEQRES 57 A 783 GLY ILE LYS ALA TYR PRO SER VAL LYS LEU TYR GLN TYR SEQRES 58 A 783 GLU ARG ALA LYS LYS SER ILE TRP GLU GLU GLN ILE ASN SEQRES 59 A 783 SER ARG ASP ALA LYS THR ILE ALA ALA LEU ILE TYR GLY SEQRES 60 A 783 LYS LEU GLU THR LEU GLN SER GLN VAL LYS ARG ASN LYS SEQRES 61 A 783 ASP GLU LEU HET 1PS A 801 13 HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS FORMUL 2 1PS C8 H11 N O3 S FORMUL 3 HOH *200(H2 O) HELIX 1 AA1 ASN A 35 LEU A 40 1 6 HELIX 2 AA2 SER A 47 HIS A 63 1 17 HELIX 3 AA3 PRO A 64 ASN A 67 5 4 HELIX 4 AA4 HIS A 74 LYS A 88 1 15 HELIX 5 AA5 ASP A 89 GLY A 100 1 12 HELIX 6 AA6 SER A 114 ASP A 121 1 8 HELIX 7 AA7 GLU A 135 ARG A 137 5 3 HELIX 8 AA8 GLU A 138 ASN A 144 1 7 HELIX 9 AA9 LEU A 164 VAL A 175 1 12 HELIX 10 AB1 ASP A 189 LYS A 196 1 8 HELIX 11 AB2 SER A 221 GLN A 231 1 11 HELIX 12 AB3 ASN A 244 ALA A 255 1 12 HELIX 13 AB4 THR A 272 LEU A 283 1 12 HELIX 14 AB5 GLN A 297 LEU A 304 1 8 HELIX 15 AB6 ASP A 335 LEU A 347 1 13 HELIX 16 AB7 GLU A 359 HIS A 365 1 7 HELIX 17 AB8 ASP A 381 LYS A 385 5 5 HELIX 18 AB9 LYS A 386 LEU A 391 1 6 HELIX 19 AC1 LYS A 392 GLU A 394 5 3 HELIX 20 AC2 ALA A 406 LEU A 413 1 8 HELIX 21 AC3 ILE A 439 ASN A 452 1 14 HELIX 22 AC4 SER A 480 LEU A 497 1 18 HELIX 23 AC5 HIS A 511 TYR A 518 1 8 HELIX 24 AC6 SER A 542 ASN A 555 1 14 HELIX 25 AC7 THR A 562 VAL A 570 1 9 HELIX 26 AC8 SER A 588 LEU A 605 1 18 HELIX 27 AC9 TYR A 619 GLU A 626 1 8 HELIX 28 AD1 ASP A 656 GLY A 666 1 11 HELIX 29 AD2 THR A 676 VAL A 684 1 9 HELIX 30 AD3 SER A 700 LYS A 718 1 19 HELIX 31 AD4 TYR A 731 GLY A 739 1 9 HELIX 32 AD5 ARG A 753 LYS A 756 5 4 HELIX 33 AD6 ASP A 767 THR A 781 1 15 SHEET 1 AA1 5 ILE A 131 THR A 133 0 SHEET 2 AA1 5 ARG A 180 ASN A 185 1 O ILE A 181 N ILE A 132 SHEET 3 AA1 5 TRP A 149 TYR A 154 1 N PHE A 150 O GLY A 182 SHEET 4 AA1 5 SER A 203 PHE A 207 -1 O PHE A 207 N TRP A 149 SHEET 5 AA1 5 VAL A 214 TYR A 216 -1 O TYR A 216 N LEU A 204 SHEET 1 AA2 5 VAL A 237 LEU A 240 0 SHEET 2 AA2 5 VAL A 287 ASP A 293 1 O TRP A 291 N LEU A 240 SHEET 3 AA2 5 GLY A 258 CYS A 264 1 N LEU A 260 O ASN A 288 SHEET 4 AA2 5 THR A 311 PHE A 314 -1 O PHE A 314 N TRP A 259 SHEET 5 AA2 5 LEU A 329 LEU A 331 -1 O LEU A 331 N THR A 311 SHEET 1 AA3 5 GLU A 351 LEU A 352 0 SHEET 2 AA3 5 ILE A 396 ASP A 402 1 O ARG A 400 N GLU A 351 SHEET 3 AA3 5 ARG A 366 HIS A 372 1 N LEU A 368 O VAL A 399 SHEET 4 AA3 5 SER A 419 PHE A 423 -1 O ALA A 421 N VAL A 369 SHEET 5 AA3 5 TYR A 431 ILE A 433 -1 O GLU A 432 N VAL A 422 SHEET 1 AA4 5 VAL A 455 THR A 457 0 SHEET 2 AA4 5 LYS A 502 ASP A 507 1 O THR A 505 N THR A 456 SHEET 3 AA4 5 TRP A 471 PHE A 476 1 N LEU A 472 O LYS A 502 SHEET 4 AA4 5 THR A 525 ASN A 530 -1 O VAL A 527 N VAL A 473 SHEET 5 AA4 5 SER A 533 TYR A 537 -1 O TYR A 537 N THR A 526 SHEET 1 AA5 5 VAL A 559 SER A 560 0 SHEET 2 AA5 5 ASN A 610 ASP A 615 1 O VAL A 611 N VAL A 559 SHEET 3 AA5 5 TRP A 579 TYR A 584 1 N MET A 580 O GLY A 612 SHEET 4 AA5 5 GLU A 633 TYR A 637 -1 O GLU A 633 N PHE A 583 SHEET 5 AA5 5 HIS A 648 SER A 649 -1 O HIS A 648 N PHE A 636 SHEET 1 AA6 5 ILE A 673 ASP A 674 0 SHEET 2 AA6 5 ARG A 722 ASP A 727 1 O ALA A 723 N ILE A 673 SHEET 3 AA6 5 TRP A 691 TYR A 696 1 N ASP A 694 O VAL A 726 SHEET 4 AA6 5 SER A 745 GLU A 752 -1 O TYR A 749 N TRP A 691 SHEET 5 AA6 5 SER A 757 ILE A 763 -1 O SER A 757 N GLU A 752 SSBOND 1 CYS A 186 CYS A 193 1555 1555 2.03 SSBOND 2 CYS A 264 CYS A 270 1555 1555 2.04 SSBOND 3 CYS A 294 CYS A 301 1555 1555 2.03 SSBOND 4 CYS A 403 CYS A 410 1555 1555 2.03 SSBOND 5 CYS A 508 CYS A 515 1555 1555 2.03 SSBOND 6 CYS A 616 CYS A 623 1555 1555 2.04 SSBOND 7 CYS A 728 CYS A 735 1555 1555 2.02 CISPEP 1 TYR A 201 PRO A 202 0 0.44 CISPEP 2 TYR A 523 PRO A 524 0 -3.86 CISPEP 3 TYR A 631 PRO A 632 0 0.42 CISPEP 4 TYR A 743 PRO A 744 0 -6.75 SITE 1 AC1 4 GLU A 761 GLN A 762 ASN A 764 SER A 765 CRYST1 75.981 75.564 79.237 90.00 99.41 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013161 0.000000 0.002181 0.00000 SCALE2 0.000000 0.013234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012793 0.00000