HEADER OXIDOREDUCTASE 15-SEP-15 5AZ0 TITLE CRYSTAL STRUCTURE OF ALDO-KETO REDUCTASE (AKR2E5) OF THE SILKWORM, TITLE 2 BOMBYX MORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: LOC101740031; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME SPECIFICITY, LEPIDOPTERA, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMAMOTO,A.HIGASHIURA,M.SUZUKI,A.NAKAGAWA REVDAT 4 20-MAR-24 5AZ0 1 REMARK REVDAT 3 26-FEB-20 5AZ0 1 JRNL REMARK REVDAT 2 18-MAY-16 5AZ0 1 JRNL REVDAT 1 10-FEB-16 5AZ0 0 JRNL AUTH K.YAMAMOTO,A.HIGASHIURA,M.SUZUKI,T.SHIOTSUKI,R.SUGAHARA, JRNL AUTH 2 T.FUJII,A.NAKAGAWA JRNL TITL STRUCTURAL CHARACTERIZATION OF AN ALDO-KETO REDUCTASE JRNL TITL 2 (AKR2E5) FROM THE SILKWORM BOMBYX MORI JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 474 104 2016 JRNL REFN ESSN 1090-2104 JRNL PMID 27103441 JRNL DOI 10.1016/J.BBRC.2016.04.079 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1401 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1928 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.718 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2704 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2574 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3671 ; 1.909 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5910 ; 1.070 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;38.572 ;24.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 449 ;13.623 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.430 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3076 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 617 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1308 ; 3.361 ; 3.286 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1299 ; 3.339 ; 3.276 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1620 ; 4.669 ; 4.877 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1621 ; 4.671 ; 4.879 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1396 ; 4.078 ; 3.593 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1397 ; 4.077 ; 3.595 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2048 ; 6.113 ; 5.247 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3265 ; 8.080 ;26.752 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3158 ; 7.955 ;26.322 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1300000219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-2000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M AMMONIUM ACETATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.20933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.41867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.81400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 123.02333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.60467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.20933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 98.41867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 123.02333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 73.81400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.60467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 ASP A 36 REMARK 465 GLN A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 PHE A 42 REMARK 465 GLY A 43 REMARK 465 PHE A 44 REMARK 465 ARG A 233 REMARK 465 ALA A 234 REMARK 465 THR A 235 REMARK 465 LYS A 333 REMARK 465 HIS A 334 REMARK 465 VAL A 335 REMARK 465 ALA A 348 REMARK 465 ASN A 349 REMARK 465 GLY A 350 REMARK 465 ASP A 351 REMARK 465 ILE A 352 REMARK 465 ASP A 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 510 O HOH A 699 1.70 REMARK 500 O HOH A 545 O HOH A 699 1.92 REMARK 500 O HOH A 652 O HOH A 727 2.10 REMARK 500 O HOH A 530 O HOH A 733 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 114 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 114 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 342 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 76 -18.76 79.22 REMARK 500 ASN A 237 41.30 -101.57 REMARK 500 SER A 289 63.55 -102.05 REMARK 500 ASN A 308 14.39 -148.36 REMARK 500 ARG A 342 -37.50 -136.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 737 O REMARK 620 2 HOH A 738 O 77.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZ0 RELATED DB: PDB DBREF 5AZ0 A 1 353 UNP H9JJU9 H9JJU9_BOMMO 1 341 SEQADV 5AZ0 SER A 32 UNP H9JJU9 INSERTION SEQADV 5AZ0 SER A 33 UNP H9JJU9 INSERTION SEQADV 5AZ0 GLY A 34 UNP H9JJU9 INSERTION SEQADV 5AZ0 ALA A 35 UNP H9JJU9 INSERTION SEQADV 5AZ0 ASP A 36 UNP H9JJU9 INSERTION SEQADV 5AZ0 GLN A 37 UNP H9JJU9 INSERTION SEQADV 5AZ0 PRO A 38 UNP H9JJU9 INSERTION SEQADV 5AZ0 ALA A 39 UNP H9JJU9 INSERTION SEQADV 5AZ0 GLU A 40 UNP H9JJU9 INSERTION SEQADV 5AZ0 GLU A 41 UNP H9JJU9 INSERTION SEQADV 5AZ0 PHE A 42 UNP H9JJU9 INSERTION SEQADV 5AZ0 GLY A 43 UNP H9JJU9 INSERTION SEQRES 1 A 353 MET ASN LYS VAL ASN VAL PRO ASN PHE LYS LEU ASN ASN SEQRES 2 A 353 GLY ASP GLU ILE PRO ALA LEU GLY TYR GLY THR TRP LEU SEQRES 3 A 353 GLY VAL SER GLU LYS SER SER GLY ALA ASP GLN PRO ALA SEQRES 4 A 353 GLU GLU PHE GLY PHE ASP PHE ASP GLY THR ASP ILE PRO SEQRES 5 A 353 LYS LEU LEU ASP ALA LEU SER TYR ALA ILE ASP ILE GLY SEQRES 6 A 353 TYR ARG HIS ILE ASP THR ALA HIS PHE TYR ARG VAL GLU SEQRES 7 A 353 PRO GLU ILE GLY GLN VAL VAL GLN GLU LYS ILE ASN GLU SEQRES 8 A 353 GLY VAL VAL ARG ARG GLU ASP LEU PHE ILE THR THR LYS SEQRES 9 A 353 VAL TRP GLN HIS TYR HIS ARG ALA ALA ASP VAL GLU VAL SEQRES 10 A 353 SER LEU ARG ALA SER LEU HIS ARG LEU GLY LEU ASP HIS SEQRES 11 A 353 VAL ASN LEU VAL LEU MET HIS TRP PRO MET SER ILE SER SEQRES 12 A 353 GLN GLU GLY VAL ASP GLU LYS ILE ASP TYR LEU GLU THR SEQRES 13 A 353 TRP ARG GLY PHE GLU GLU VAL LEU LYS LYS GLY LEU THR SEQRES 14 A 353 LYS ALA ILE GLY VAL SER ASN PHE ASN ILE GLU GLN MET SEQRES 15 A 353 LYS ARG LEU LEU THR ASN CYS ASN VAL PRO PRO ALA VAL SEQRES 16 A 353 ASN GLN ILE GLU VAL ASN LEU ASN LEU SER GLN ALA ASP SEQRES 17 A 353 LEU VAL ASP TYR CYS GLN ALA ASN GLU VAL VAL VAL VAL SEQRES 18 A 353 ALA TYR SER PRO PHE GLY THR MET VAL PRO SER ARG ALA SEQRES 19 A 353 THR LEU ASN SER PRO GLU PRO LYS LEU ASP ASN PRO ALA SEQRES 20 A 353 MET LEU ALA ILE GLY ARG LYS TYR GLY LYS THR VAL THR SEQRES 21 A 353 GLN VAL ASN LEU GLY TYR LEU TYR GLN ARG GLY ILE VAL SEQRES 22 A 353 SER ILE PRO LYS THR VAL THR LYS SER ARG VAL LEU GLU SEQRES 23 A 353 ASN ALA SER ILE PHE ASP PHE GLN LEU ASP ASP GLU ASP SEQRES 24 A 353 VAL ALA THR LEU ALA GLN PHE ASP ASN GLY PHE ARG THR SEQRES 25 A 353 VAL ARG PRO LEU PHE TRP GLN PRO TYR GLU ASN TYR PRO SEQRES 26 A 353 PHE ASP VAL VAL PRO GLY GLN LYS HIS VAL ASP ILE PRO SEQRES 27 A 353 ILE ALA MET ARG LYS TRP LYS ASN GLY ALA ASN GLY ASP SEQRES 28 A 353 ILE ASP HET CA A 401 1 HET EDO A 402 4 HET ACT A 403 4 HET ACT A 404 4 HET ACT A 405 4 HET ACT A 406 4 HET ACT A 407 4 HET ACT A 408 4 HET ACT A 409 4 HET ACT A 410 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA CA 2+ FORMUL 3 EDO C2 H6 O2 FORMUL 4 ACT 8(C2 H3 O2 1-) FORMUL 12 HOH *250(H2 O) HELIX 1 AA1 ASP A 50 GLY A 65 1 16 HELIX 2 AA2 ALA A 72 ARG A 76 5 5 HELIX 3 AA3 VAL A 77 GLU A 91 1 15 HELIX 4 AA4 ARG A 95 LEU A 99 5 5 HELIX 5 AA5 ARG A 111 GLY A 127 1 17 HELIX 6 AA6 ASP A 152 LYS A 166 1 15 HELIX 7 AA7 ASN A 178 CYS A 189 1 12 HELIX 8 AA8 GLN A 206 ASN A 216 1 11 HELIX 9 AA9 ASN A 245 GLY A 256 1 12 HELIX 10 AB1 THR A 258 ARG A 270 1 13 HELIX 11 AB2 THR A 280 ALA A 288 1 9 HELIX 12 AB3 ASP A 296 GLN A 305 1 10 HELIX 13 AB4 PRO A 315 GLN A 319 5 5 HELIX 14 AB5 PRO A 338 ARG A 342 5 5 SHEET 1 AA1 2 ASN A 8 LYS A 10 0 SHEET 2 AA1 2 GLU A 16 PRO A 18 -1 O ILE A 17 N PHE A 9 SHEET 1 AA2 8 TYR A 22 GLY A 23 0 SHEET 2 AA2 8 HIS A 68 ASP A 70 1 O HIS A 68 N TYR A 22 SHEET 3 AA2 8 PHE A 100 VAL A 105 1 O PHE A 100 N ILE A 69 SHEET 4 AA2 8 LEU A 133 MET A 136 1 O LEU A 135 N VAL A 105 SHEET 5 AA2 8 ILE A 172 SER A 175 1 O GLY A 173 N VAL A 134 SHEET 6 AA2 8 VAL A 195 GLU A 199 1 O GLN A 197 N VAL A 174 SHEET 7 AA2 8 VAL A 219 TYR A 223 1 O VAL A 221 N ILE A 198 SHEET 8 AA2 8 VAL A 273 SER A 274 1 O VAL A 273 N ALA A 222 LINK CA CA A 401 O HOH A 737 1555 1555 3.19 LINK CA CA A 401 O HOH A 738 1555 1555 3.07 CISPEP 1 GLU A 240 PRO A 241 0 2.82 SITE 1 AC1 4 ARG A 96 ASP A 129 HIS A 130 HOH A 738 SITE 1 AC2 4 SER A 205 ASP A 307 HOH A 509 HOH A 581 SITE 1 AC3 10 ASN A 176 PHE A 177 ASN A 178 ILE A 198 SITE 2 AC3 10 GLN A 206 LEU A 209 ARG A 311 PHE A 326 SITE 3 AC3 10 HOH A 594 HOH A 709 SITE 1 AC4 5 LYS A 165 GLY A 271 HOH A 515 HOH A 555 SITE 2 AC4 5 HOH A 642 SITE 1 AC5 6 GLY A 23 THR A 24 TRP A 25 ASP A 70 SITE 2 AC5 6 TYR A 75 HOH A 522 SITE 1 AC6 5 GLY A 309 PHE A 310 ARG A 311 ARG A 314 SITE 2 AC6 5 HOH A 674 SITE 1 AC7 3 ARG A 67 ASP A 98 HOH A 646 SITE 1 AC8 3 TYR A 153 HOH A 605 HOH A 606 SITE 1 AC9 8 SER A 205 GLN A 206 ALA A 207 ASP A 208 SITE 2 AC9 8 ASP A 307 HOH A 532 HOH A 571 HOH A 656 SITE 1 AD1 4 THR A 278 VAL A 279 THR A 280 ARG A 283 CRYST1 112.180 112.180 147.628 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008914 0.005147 0.000000 0.00000 SCALE2 0.000000 0.010293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006774 0.00000