HEADER SUGAR BINDING PROTEIN, PEPTIDE BINDING P27-SEP-15 5AZ8 TITLE CRYSTAL STRUCTURE OF MBP-TOM20 FUSION PROTEIN TETHERED WITH ALDH TITLE 2 PRESEQUENCE VIA A DISULFIDE BOND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,MITOCHONDRIAL IMPORT COMPND 3 RECEPTOR SUBUNIT TOM20 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 27-394,UNP RESIDUES 65-126,UNP RESIDUES 27- COMPND 6 394,UNP RESIDUES 65-126; COMPND 7 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,MITOCHONDRIAL 20 KDA COMPND 8 OUTER MEMBRANE PROTEIN,OUTER MITOCHONDRIAL MEMBRANE RECEPTOR TOM20; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: THE FUSION PROTEIN OF 1-369 MALTOSE BINDING PROTEIN, COMPND 12 370-373 LINKER AND 374-435 TOM20; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: PEPTIDE GPRLSRLLSYAGC; COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), RATTUS SOURCE 3 NORVEGICUS; SOURCE 4 ORGANISM_COMMON: RAT; SOURCE 5 ORGANISM_TAXID: 83333, 10116; SOURCE 6 STRAIN: K12; SOURCE 7 GENE: MALE, B4034, JW3994, TOMM20; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_TAXID: 10116 KEYWDS FUSION PROTEIN COMLEX, SUGAR BINDING PROTEIN, TRANSPORT PROTEIN, KEYWDS 2 PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MATSUOKA,D.KOHDA REVDAT 5 08-NOV-23 5AZ8 1 HETSYN REVDAT 4 29-JUL-20 5AZ8 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 26-FEB-20 5AZ8 1 JRNL REMARK REVDAT 2 09-MAR-16 5AZ8 1 JRNL REVDAT 1 13-JAN-16 5AZ8 0 JRNL AUTH R.MATSUOKA,A.SHIMADA,Y.KOMURO,Y.SUGITA,D.KOHDA JRNL TITL RATIONAL DESIGN OF CRYSTAL CONTACT-FREE SPACE IN PROTEIN JRNL TITL 2 CRYSTALS FOR ANALYZING SPATIAL DISTRIBUTION OF MOTIONS JRNL TITL 3 WITHIN PROTEIN MOLECULES. JRNL REF PROTEIN SCI. V. 25 754 2016 JRNL REFN ESSN 1469-896X JRNL PMID 26694222 JRNL DOI 10.1002/PRO.2867 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 53911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3979 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3465 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.660 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3575 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3440 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4850 ; 2.010 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7952 ; 1.105 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 6.542 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;31.876 ;25.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;13.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.065 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4026 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 761 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1777 ; 2.013 ; 2.304 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1778 ; 2.012 ; 2.305 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2216 ; 2.653 ; 3.447 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2217 ; 2.652 ; 3.447 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1798 ; 4.172 ; 2.788 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1798 ; 4.172 ; 2.788 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2635 ; 6.218 ; 3.975 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4536 ; 8.942 ;21.174 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4351 ; 8.754 ;20.506 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1300000239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ANF, 2V1T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 8000, 20% GLYCEROL, 0.04M REMARK 280 POTASSIUM THIOCYANATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.30200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.50650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.50650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 159.45300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.50650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.50650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.15100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.50650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.50650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 159.45300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.50650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.50650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.15100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 106.30200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 GLY B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PRO B 8 O1 AAC B 101 1.50 REMARK 500 O HOH A 647 O HOH A 827 1.63 REMARK 500 O HOH A 890 O HOH A 903 1.74 REMARK 500 O HOH A 686 O HOH A 849 1.83 REMARK 500 CE LYS A 142 O HOH A 601 1.88 REMARK 500 CG MET A 150 O HOH A 960 1.92 REMARK 500 CB GLU A 47 O HOH A 899 1.98 REMARK 500 O HOH A 928 O HOH A 970 2.00 REMARK 500 CE MET A 150 O HOH A 960 2.01 REMARK 500 O HOH A 633 O HOH A 803 2.02 REMARK 500 O HOH A 629 O HOH A 953 2.06 REMARK 500 SD MET A 150 O HOH A 960 2.06 REMARK 500 NZ LYS A 142 O HOH A 601 2.07 REMARK 500 O HOH A 831 O HOH A 954 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 627 O HOH A 627 7555 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 34 N GLY A 34 CA 0.177 REMARK 500 GLY A 34 CA GLY A 34 C 0.125 REMARK 500 SER A 235 CB SER A 235 OG -0.089 REMARK 500 GLU A 280 CD GLU A 280 OE1 0.094 REMARK 500 GLU A 280 CD GLU A 280 OE2 -0.094 REMARK 500 SER A 339 CB SER A 339 OG -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 34 C - N - CA ANGL. DEV. = -20.8 DEGREES REMARK 500 GLY A 34 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 THR A 82 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 84 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 238 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU A 280 CG - CD - OE2 ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP A 289 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 316 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 170 -79.57 -84.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 34 ILE A 35 -121.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZ6 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ7 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ9 RELATED DB: PDB REMARK 900 RELATED ID: 5AZA RELATED DB: PDB DBREF 5AZ8 A 3 370 UNP P0AEX9 MALE_ECOLI 27 394 DBREF 5AZ8 A 375 436 UNP Q62760 TOM20_RAT 65 126 DBREF 5AZ8 B 7 19 PDB 5AZ8 5AZ8 7 19 SEQADV 5AZ8 MET A 2 UNP P0AEX9 INITIATING METHIONINE SEQADV 5AZ8 VAL A 314 UNP P0AEX9 ALA 338 ENGINEERED MUTATION SEQADV 5AZ8 LYS A 371 UNP P0AEX9 LINKER SEQADV 5AZ8 GLU A 372 UNP P0AEX9 LINKER SEQADV 5AZ8 ALA A 373 UNP P0AEX9 LINKER SEQADV 5AZ8 LEU A 374 UNP P0AEX9 LINKER SEQRES 1 A 435 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 435 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 435 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 435 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 435 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 435 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 435 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 435 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 435 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 435 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 435 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 435 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 435 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 435 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 435 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 435 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 435 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 435 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 435 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 435 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 435 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 435 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 435 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 435 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 435 VAL LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 435 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 435 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 435 ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP SEQRES 29 A 435 ALA GLN THR ARG ILE LYS GLU ALA LEU ALA VAL GLN LYS SEQRES 30 A 435 PHE PHE LEU GLU GLU ILE GLN LEU GLY GLU GLU LEU LEU SEQRES 31 A 435 ALA GLN GLY ASP TYR GLU LYS GLY VAL ASP HIS LEU THR SEQRES 32 A 435 ASN ALA ILE ALA VAL CYS GLY GLN PRO GLN GLN LEU LEU SEQRES 33 A 435 GLN VAL LEU GLN GLN THR LEU PRO PRO PRO VAL PHE GLN SEQRES 34 A 435 MET LEU LEU THR LYS LEU SEQRES 1 B 13 GLY PRO ARG LEU SER ARG LEU LEU SER TYR ALA GLY CY3 HET CY3 B 19 7 HET GLC C 1 12 HET GLC C 2 11 HET AAC B 101 8 HETNAM CY3 2-AMINO-3-MERCAPTO-PROPIONAMIDE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM AAC ACETYLAMINO-ACETIC ACID HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 CY3 C3 H8 N2 O S FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 AAC C4 H7 N O3 FORMUL 5 HOH *403(H2 O) HELIX 1 AA1 GLY A 18 THR A 33 1 16 HELIX 2 AA2 LYS A 44 ALA A 54 1 11 HELIX 3 AA3 ARG A 68 SER A 75 1 8 HELIX 4 AA4 ASP A 84 ASP A 89 1 6 HELIX 5 AA5 TYR A 92 VAL A 99 1 8 HELIX 6 AA6 THR A 130 GLU A 132 5 3 HELIX 7 AA7 GLU A 133 ALA A 143 1 11 HELIX 8 AA8 GLU A 155 PHE A 158 5 4 HELIX 9 AA9 THR A 159 ASP A 166 1 8 HELIX 10 AB1 ASN A 187 ASN A 203 1 17 HELIX 11 AB2 ASP A 211 LYS A 221 1 11 HELIX 12 AB3 GLY A 230 TRP A 232 5 3 HELIX 13 AB4 ALA A 233 LYS A 241 1 9 HELIX 14 AB5 ASN A 274 TYR A 285 1 12 HELIX 15 AB6 THR A 288 LYS A 299 1 12 HELIX 16 AB7 LEU A 306 VAL A 314 1 9 HELIX 17 AB8 ASP A 316 GLY A 329 1 14 HELIX 18 AB9 GLN A 337 SER A 354 1 18 HELIX 19 AC1 THR A 358 GLN A 393 1 36 HELIX 20 AC2 ASP A 395 VAL A 409 1 15 HELIX 21 AC3 PRO A 413 LEU A 424 1 12 HELIX 22 AC4 PRO A 425 THR A 434 1 10 HELIX 23 AC5 LEU B 10 LEU B 14 5 5 SHEET 1 AA1 6 VAL A 37 GLU A 40 0 SHEET 2 AA1 6 LEU A 9 TRP A 12 1 N ILE A 11 O GLU A 40 SHEET 3 AA1 6 ILE A 61 ALA A 65 1 O PHE A 63 N TRP A 12 SHEET 4 AA1 6 PHE A 260 ILE A 268 -1 O GLY A 267 N ILE A 62 SHEET 5 AA1 6 TYR A 108 GLU A 113 -1 N GLU A 113 O GLY A 262 SHEET 6 AA1 6 ALA A 303 VAL A 304 -1 O ALA A 303 N VAL A 112 SHEET 1 AA2 5 VAL A 37 GLU A 40 0 SHEET 2 AA2 5 LEU A 9 TRP A 12 1 N ILE A 11 O GLU A 40 SHEET 3 AA2 5 ILE A 61 ALA A 65 1 O PHE A 63 N TRP A 12 SHEET 4 AA2 5 PHE A 260 ILE A 268 -1 O GLY A 267 N ILE A 62 SHEET 5 AA2 5 GLU A 330 ILE A 331 1 O GLU A 330 N VAL A 261 SHEET 1 AA3 2 ARG A 100 TYR A 101 0 SHEET 2 AA3 2 LYS A 104 LEU A 105 -1 O LYS A 104 N TYR A 101 SHEET 1 AA4 4 SER A 147 LEU A 149 0 SHEET 2 AA4 4 THR A 224 ASN A 229 1 O ALA A 225 N SER A 147 SHEET 3 AA4 4 SER A 116 ASN A 120 -1 N ILE A 118 O THR A 227 SHEET 4 AA4 4 TYR A 244 THR A 247 -1 O THR A 247 N LEU A 117 SHEET 1 AA5 2 TYR A 169 GLU A 174 0 SHEET 2 AA5 2 LYS A 177 GLY A 184 -1 O LYS A 177 N GLU A 174 SSBOND 1 CYS A 410 CY3 B 19 1555 1555 2.13 LINK C GLY B 18 N CY3 B 19 1555 1555 1.44 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.39 CRYST1 69.013 69.013 212.604 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004704 0.00000