HEADER SUGAR BINDING PROTEIN, TRANSFERASE 27-SEP-15 5AZA TITLE CRYSTAL STRUCTURE OF MBP-SAGLB FUSION PROTEIN WITH A 20-RESIDUE SPACER TITLE 2 IN THE CONNECTOR HELIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,OLIGOSACCHARYL COMPND 3 TRANSFERASE STT3 SUBUNIT RELATED PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 27-394,UNP RESIDUES 491-967; COMPND 6 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE FUSION PROTEIN OF 1-369 MALTOSE BINDING PROTEIN, COMPND 10 370-389 LINKER 390-866 AGLB (C-TERMINAL DOMAIN, UNP RESIDUE 491-967), COMPND 11 AND 867-872 HISTAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, PYROCOCCUS FURIOSUS COM1; SOURCE 3 ORGANISM_TAXID: 83333, 1185654; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MALE, B4034, JW3994, PFC_07420; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUSION PROTEIN, SUGAR BINDING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MATSUOKA,D.KOHDA REVDAT 5 08-NOV-23 5AZA 1 HETSYN REVDAT 4 29-JUL-20 5AZA 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 26-FEB-20 5AZA 1 JRNL REMARK REVDAT 2 09-MAR-16 5AZA 1 JRNL REVDAT 1 13-JAN-16 5AZA 0 JRNL AUTH R.MATSUOKA,A.SHIMADA,Y.KOMURO,Y.SUGITA,D.KOHDA JRNL TITL RATIONAL DESIGN OF CRYSTAL CONTACT-FREE SPACE IN PROTEIN JRNL TITL 2 CRYSTALS FOR ANALYZING SPATIAL DISTRIBUTION OF MOTIONS JRNL TITL 3 WITHIN PROTEIN MOLECULES. JRNL REF PROTEIN SCI. V. 25 754 2016 JRNL REFN ESSN 1469-896X JRNL PMID 26694222 JRNL DOI 10.1002/PRO.2867 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 54578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6551 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.149 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6761 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6441 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9185 ; 1.854 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14871 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 841 ; 7.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;36.233 ;24.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1139 ;18.043 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.547 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1019 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7638 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1478 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3361 ; 3.297 ; 3.695 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3360 ; 3.297 ; 3.694 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4203 ; 4.414 ; 5.519 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4204 ; 4.414 ; 5.520 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3400 ; 4.209 ; 4.112 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3400 ; 4.208 ; 4.112 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4983 ; 6.293 ; 5.973 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7619 ; 8.067 ;29.838 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7596 ; 8.069 ;29.830 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1300000241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ANF, 2ZAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 10000, 0.1M AMMOUNIUM REMARK 280 PHOSPHATE, 0.1M BIS-TRIS PH5.5, 1.0M LITHIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.23400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.46000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.23350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.46000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.23400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.23350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 TRP A 410 REMARK 465 ASP A 411 REMARK 465 TYR A 412 REMARK 465 GLY A 413 REMARK 465 TYR A 414 REMARK 465 TRP A 415 REMARK 465 ILE A 416 REMARK 465 GLU A 417 REMARK 465 SER A 418 REMARK 465 SER A 419 REMARK 465 LEU A 420 REMARK 465 LEU A 421 REMARK 465 GLY A 422 REMARK 465 GLN A 423 REMARK 465 ARG A 424 REMARK 465 ARG A 425 REMARK 465 ALA A 426 REMARK 465 SER A 427 REMARK 465 ALA A 428 REMARK 465 ASP A 429 REMARK 465 GLY A 430 REMARK 465 GLY A 431 REMARK 465 HIS A 432 REMARK 465 ALA A 433 REMARK 465 ARG A 434 REMARK 465 ALA A 862 REMARK 465 PRO A 863 REMARK 465 HIS A 864 REMARK 465 HIS A 865 REMARK 465 HIS A 866 REMARK 465 HIS A 867 REMARK 465 HIS A 868 REMARK 465 HIS A 869 REMARK 465 HIS A 870 REMARK 465 HIS A 871 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 408 OG REMARK 470 TRP A 409 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 409 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASP A 95 O HOH A 1115 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 53 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 GLY A 54 C - N - CA ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 LEU A 160 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 344 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LYS A 551 CD - CE - NZ ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -159.50 -107.35 REMARK 500 LEU A 122 81.07 -150.93 REMARK 500 ASN A 173 115.09 -168.90 REMARK 500 ASP A 184 40.46 -90.62 REMARK 500 ASP A 209 -167.77 -118.96 REMARK 500 TYR A 403 45.17 -97.02 REMARK 500 ASN A 489 32.95 -152.46 REMARK 500 SER A 525 78.48 50.03 REMARK 500 SER A 526 159.24 171.28 REMARK 500 ASN A 674 -90.91 55.90 REMARK 500 ALA A 706 160.19 178.19 REMARK 500 ASN A 800 47.53 27.50 REMARK 500 SER A 822 -49.83 79.29 REMARK 500 ASP A 834 1.82 -68.43 REMARK 500 LEU A 856 135.45 179.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 166 TYR A 167 149.76 REMARK 500 GLU A 172 ASN A 173 148.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 452 OE1 REMARK 620 2 GLU A 452 OE2 52.9 REMARK 620 3 ALA A 657 O 78.5 129.6 REMARK 620 4 TYR A 691 O 93.0 104.3 89.0 REMARK 620 5 GLU A 694 OE1 158.7 147.1 80.3 87.4 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZ6 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ7 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ8 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ9 RELATED DB: PDB DBREF 5AZA A 1 368 UNP P0AEX9 MALE_ECOLI 27 394 DBREF 5AZA A 389 865 UNP I6V0B8 I6V0B8_9EURY 491 967 SEQADV 5AZA MET A 0 UNP P0AEX9 INITIATING METHIONINE SEQADV 5AZA VAL A 312 UNP P0AEX9 ALA 338 ENGINEERED MUTATION SEQADV 5AZA ALA A 369 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 370 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 371 UNP P0AEX9 LINKER SEQADV 5AZA LYS A 372 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 373 UNP P0AEX9 LINKER SEQADV 5AZA GLU A 374 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 375 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 376 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 377 UNP P0AEX9 LINKER SEQADV 5AZA LYS A 378 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 379 UNP P0AEX9 LINKER SEQADV 5AZA GLU A 380 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 381 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 382 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 383 UNP P0AEX9 LINKER SEQADV 5AZA LYS A 384 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 385 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 386 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 387 UNP P0AEX9 LINKER SEQADV 5AZA ALA A 388 UNP P0AEX9 LINKER SEQADV 5AZA HIS A 866 UNP I6V0B8 EXPRESSION TAG SEQADV 5AZA HIS A 867 UNP I6V0B8 EXPRESSION TAG SEQADV 5AZA HIS A 868 UNP I6V0B8 EXPRESSION TAG SEQADV 5AZA HIS A 869 UNP I6V0B8 EXPRESSION TAG SEQADV 5AZA HIS A 870 UNP I6V0B8 EXPRESSION TAG SEQADV 5AZA HIS A 871 UNP I6V0B8 EXPRESSION TAG SEQRES 1 A 872 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 872 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 872 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 872 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 872 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 872 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 872 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 872 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 872 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 872 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 872 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 872 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 872 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 872 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 872 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 872 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 872 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 872 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 872 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 872 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 872 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 872 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 872 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 872 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 872 VAL LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 872 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 872 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 872 ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP SEQRES 29 A 872 ALA GLN THR ARG ILE ALA ALA ALA LYS ALA GLU ALA ALA SEQRES 30 A 872 ALA LYS ALA GLU ALA ALA ALA LYS ALA ALA ALA ALA TRP SEQRES 31 A 872 GLU ASP ALA LEU LYS TRP LEU ARG GLU ASN THR PRO GLU SEQRES 32 A 872 TYR SER THR ALA THR SER TRP TRP ASP TYR GLY TYR TRP SEQRES 33 A 872 ILE GLU SER SER LEU LEU GLY GLN ARG ARG ALA SER ALA SEQRES 34 A 872 ASP GLY GLY HIS ALA ARG ASP ARG ASP HIS ILE LEU ALA SEQRES 35 A 872 LEU PHE LEU ALA ARG ASP GLY ASN ILE SER GLU VAL ASP SEQRES 36 A 872 PHE GLU SER TRP GLU LEU ASN TYR PHE LEU VAL TYR LEU SEQRES 37 A 872 ASN ASP TRP ALA LYS PHE ASN ALA ILE SER TYR LEU GLY SEQRES 38 A 872 GLY ALA ILE THR ARG ARG GLU TYR ASN GLY ASP GLU SER SEQRES 39 A 872 GLY ARG GLY ALA VAL THR THR LEU LEU PRO LEU PRO ARG SEQRES 40 A 872 TYR GLY GLU LYS TYR VAL ASN LEU TYR ALA LYS VAL ILE SEQRES 41 A 872 VAL ASP VAL SER ASN SER SER VAL LYS VAL THR VAL GLY SEQRES 42 A 872 ASP ARG GLU CYS ASP PRO LEU MET VAL THR PHE THR PRO SEQRES 43 A 872 SER GLY LYS THR ILE LYS GLY THR GLY THR CYS SER ASP SEQRES 44 A 872 GLY ASN ALA PHE PRO TYR VAL LEU HIS LEU THR PRO THR SEQRES 45 A 872 ILE GLY VAL LEU ALA TYR TYR LYS VAL ALA THR ALA ASN SEQRES 46 A 872 PHE ILE LYS LEU ALA PHE GLY VAL PRO ALA SER THR ILE SEQRES 47 A 872 PRO GLY PHE SER ASP LYS LEU PHE SER ASN PHE GLU PRO SEQRES 48 A 872 VAL TYR GLU SER GLY ASN VAL ILE VAL TYR ARG PHE THR SEQRES 49 A 872 PRO PHE GLY ILE TYR LYS ILE GLU GLU ASN ILE ASN GLY SEQRES 50 A 872 THR TRP LYS GLN VAL TYR ASN LEU THR PRO GLY LYS HIS SEQRES 51 A 872 GLU LEU LYS LEU TYR ILE SER ALA PHE GLY ARG ASP ILE SEQRES 52 A 872 GLU ASN ALA THR LEU TYR ILE TYR ALA ILE ASN ASN GLU SEQRES 53 A 872 LYS ILE ILE GLU LYS ILE LYS ILE ALA GLU ILE SER HIS SEQRES 54 A 872 MET ASP TYR LEU ASN GLU TYR PRO ILE ALA VAL ASN VAL SEQRES 55 A 872 THR LEU PRO ASN ALA THR SER TYR ARG PHE VAL LEU VAL SEQRES 56 A 872 GLN LYS GLY PRO ILE GLY VAL LEU LEU ASP ALA PRO LYS SEQRES 57 A 872 VAL ASN GLY GLU ILE ARG SER PRO THR ASN ILE LEU ARG SEQRES 58 A 872 GLU GLY GLU SER GLY GLU ILE GLU LEU LYS VAL GLY VAL SEQRES 59 A 872 ASP LYS ASP TYR THR ALA ASP LEU TYR LEU ARG ALA THR SEQRES 60 A 872 PHE ILE TYR LEU VAL ARG LYS SER GLY LYS ASP ASN GLU SEQRES 61 A 872 ASP TYR ASP ALA ALA PHE GLU PRO GLN MET ASP VAL PHE SEQRES 62 A 872 PHE ILE THR LYS ILE GLY GLU ASN ILE GLN LEU LYS GLU SEQRES 63 A 872 GLY GLU ASN THR VAL LYS VAL ARG ALA GLU LEU PRO GLU SEQRES 64 A 872 GLY VAL ILE SER SER TYR LYS ASP GLU LEU GLN ARG LYS SEQRES 65 A 872 TYR GLY ASP LYS LEU ILE ILE ARG GLY ILE ARG VAL GLU SEQRES 66 A 872 PRO VAL PHE ILE ALA GLU LYS GLU TYR LEU MET LEU GLU SEQRES 67 A 872 VAL SER ALA SER ALA PRO HIS HIS HIS HIS HIS HIS HIS SEQRES 68 A 872 HIS HET GLC B 1 12 HET GLC B 2 11 HET CA A 902 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 CA CA 2+ FORMUL 4 HOH *126(H2 O) HELIX 1 AA1 GLY A 16 GLY A 32 1 17 HELIX 2 AA2 LYS A 42 THR A 53 1 12 HELIX 3 AA3 ARG A 66 SER A 73 1 8 HELIX 4 AA4 ASP A 82 ASP A 87 1 6 HELIX 5 AA5 LYS A 88 LEU A 89 5 2 HELIX 6 AA6 TYR A 90 PRO A 91 5 2 HELIX 7 AA7 PHE A 92 VAL A 97 1 6 HELIX 8 AA8 THR A 128 GLU A 130 5 3 HELIX 9 AA9 GLU A 131 ALA A 141 1 11 HELIX 10 AB1 GLU A 153 ALA A 162 1 10 HELIX 11 AB2 ASN A 185 ASN A 201 1 17 HELIX 12 AB3 ASP A 209 LYS A 219 1 11 HELIX 13 AB4 GLY A 228 TRP A 230 5 3 HELIX 14 AB5 ALA A 231 LYS A 239 1 9 HELIX 15 AB6 ASN A 272 TYR A 283 1 12 HELIX 16 AB7 THR A 286 LYS A 297 1 12 HELIX 17 AB8 LEU A 304 VAL A 312 1 9 HELIX 18 AB9 ASP A 314 LYS A 326 1 13 HELIX 19 AC1 GLN A 335 GLY A 353 1 19 HELIX 20 AC2 THR A 356 THR A 400 1 45 HELIX 21 AC3 ARG A 436 ARG A 446 1 11 HELIX 22 AC4 GLY A 448 GLU A 452 5 5 HELIX 23 AC5 ASN A 468 ALA A 471 5 4 HELIX 24 AC6 LYS A 472 GLY A 480 1 9 HELIX 25 AC7 THR A 484 GLY A 490 1 7 HELIX 26 AC8 LYS A 579 ALA A 581 5 3 HELIX 27 AC9 ALA A 583 GLY A 591 1 9 HELIX 28 AD1 GLY A 599 ASN A 607 1 9 HELIX 29 AD2 GLY A 819 GLY A 833 1 15 SHEET 1 AA1 6 VAL A 35 GLU A 38 0 SHEET 2 AA1 6 LEU A 7 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 AA1 6 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA1 6 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 AA1 6 TYR A 106 GLU A 111 -1 N GLU A 111 O GLY A 260 SHEET 6 AA1 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 AA2 5 VAL A 35 GLU A 38 0 SHEET 2 AA2 5 LEU A 7 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 AA2 5 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA2 5 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 AA2 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 AA3 2 ARG A 98 TYR A 99 0 SHEET 2 AA3 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 AA4 3 MET A 224 ASN A 227 0 SHEET 2 AA4 3 SER A 114 ASN A 118 -1 N ILE A 116 O THR A 225 SHEET 3 AA4 3 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 AA5 2 PHE A 169 TYR A 171 0 SHEET 2 AA5 2 TYR A 176 ILE A 178 -1 O ASP A 177 N LYS A 170 SHEET 1 AA6 4 ALA A 406 THR A 407 0 SHEET 2 AA6 4 TYR A 462 TYR A 466 1 O LEU A 464 N THR A 407 SHEET 3 AA6 4 VAL A 617 PHE A 622 -1 O ILE A 618 N VAL A 465 SHEET 4 AA6 4 PHE A 608 SER A 614 -1 N GLU A 609 O ARG A 621 SHEET 1 AA710 THR A 549 LYS A 551 0 SHEET 2 AA710 MET A 540 PHE A 543 -1 N VAL A 541 O ILE A 550 SHEET 3 AA710 TYR A 564 LEU A 568 1 O LEU A 568 N THR A 542 SHEET 4 AA710 ILE A 572 TYR A 577 -1 O ALA A 576 N VAL A 565 SHEET 5 AA710 LEU A 501 TYR A 507 -1 N LEU A 504 O GLY A 573 SHEET 6 AA710 LYS A 510 ASN A 513 -1 O LYS A 510 N TYR A 507 SHEET 7 AA710 VAL A 518 ASP A 521 -1 O VAL A 520 N TYR A 511 SHEET 8 AA710 LYS A 528 VAL A 531 -1 O THR A 530 N ILE A 519 SHEET 9 AA710 ARG A 534 ASP A 537 -1 O CYS A 536 N VAL A 529 SHEET 10 AA710 THR A 555 CYS A 556 -1 O THR A 555 N ASP A 537 SHEET 1 AA8 4 THR A 637 VAL A 641 0 SHEET 2 AA8 4 PHE A 625 ILE A 634 -1 N GLU A 632 O LYS A 639 SHEET 3 AA8 4 GLY A 647 ALA A 657 -1 O SER A 656 N GLY A 626 SHEET 4 AA8 4 ILE A 697 LEU A 703 -1 O VAL A 699 N LEU A 651 SHEET 1 AA9 6 LYS A 676 MET A 689 0 SHEET 2 AA9 6 ILE A 662 ASN A 673 -1 N ALA A 665 O ILE A 686 SHEET 3 AA9 6 SER A 708 ILE A 719 -1 O SER A 708 N ILE A 672 SHEET 4 AA9 6 LEU A 836 SER A 859 -1 O LEU A 856 N PHE A 711 SHEET 5 AA9 6 TYR A 757 ARG A 772 -1 N LEU A 770 O ILE A 837 SHEET 6 AA9 6 PHE A 785 LEU A 803 -1 O ILE A 801 N ALA A 759 SHEET 1 AB1 4 VAL A 721 LEU A 722 0 SHEET 2 AB1 4 SER A 744 VAL A 753 -1 O GLY A 752 N VAL A 721 SHEET 3 AB1 4 LYS A 727 VAL A 728 -1 N LYS A 727 O GLU A 748 SHEET 4 AB1 4 GLU A 731 ILE A 732 -1 O GLU A 731 N VAL A 728 SHEET 1 AB2 3 VAL A 721 LEU A 722 0 SHEET 2 AB2 3 SER A 744 VAL A 753 -1 O GLY A 752 N VAL A 721 SHEET 3 AB2 3 GLY A 806 GLU A 815 -1 O VAL A 812 N ILE A 747 SSBOND 1 CYS A 536 CYS A 556 1555 1555 2.15 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 LINK OE1 GLU A 452 CA CA A 902 1555 1555 2.36 LINK OE2 GLU A 452 CA CA A 902 1555 1555 2.52 LINK O ALA A 657 CA CA A 902 1555 1555 2.25 LINK O TYR A 691 CA CA A 902 1555 1555 2.26 LINK OE1 GLU A 694 CA CA A 902 1555 1555 2.37 CISPEP 1 THR A 544 PRO A 545 0 16.96 CRYST1 66.468 100.467 140.920 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007096 0.00000