HEADER TRANSFERASE 02-NOV-15 5B0R TITLE BETA-1,2-MANNOBIOSE PHOSPHORYLASE FROM LISTERIA INNOCUA - BETA-1,2- TITLE 2 MANNOBIOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN0857 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-1,2-MANNOBIOSE PHOSPHORYLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA CLIP11262; SOURCE 3 ORGANISM_TAXID: 272626; SOURCE 4 STRAIN: CLIP 11262; SOURCE 5 GENE: LIN0857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A (+) KEYWDS GLYCOSIDE PHOSPHORYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TSUDA,T.ARAKAWA,S.FUSHINOBU REVDAT 5 08-NOV-23 5B0R 1 HETSYN REVDAT 4 29-JUL-20 5B0R 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 26-FEB-20 5B0R 1 JRNL REMARK REVDAT 2 23-DEC-15 5B0R 1 JRNL REVDAT 1 02-DEC-15 5B0R 0 JRNL AUTH T.TSUDA,T.NIHIRA,K.CHIKU,E.SUZUKI,T.ARAKAWA,M.NISHIMOTO, JRNL AUTH 2 M.KITAOKA,H.NAKAI,S.FUSHINOBU JRNL TITL CHARACTERIZATION AND CRYSTAL STRUCTURE DETERMINATION OF JRNL TITL 2 BETA-1,2-MANNOBIOSE PHOSPHORYLASE FROM LISTERIA INNOCUA JRNL REF FEBS LETT. V. 589 3816 2015 JRNL REFN ISSN 0014-5793 JRNL PMID 26632508 JRNL DOI 10.1016/J.FEBSLET.2015.11.034 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 113576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8319 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 408 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5920 ; 0.029 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5464 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8036 ; 2.480 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12646 ; 1.151 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 708 ; 7.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;32.768 ;24.552 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 958 ;12.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.222 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 890 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6576 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1318 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2826 ; 2.968 ; 2.666 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2825 ; 2.967 ; 2.666 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3530 ; 3.485 ; 3.993 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3531 ; 3.485 ; 3.993 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3094 ; 4.269 ; 3.071 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3094 ; 4.269 ; 3.071 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4505 ; 5.828 ; 4.444 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6661 ; 6.712 ;22.336 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6660 ; 6.712 ;22.332 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5B0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1300000323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1VKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M (NH4)2SO4, 10 MM COCL2, 0.1 M REMARK 280 MES-NAOH, PH 6.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.25800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.51600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.51600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.25800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 354 REMARK 465 LYS A 355 REMARK 465 LEU A 356 REMARK 465 GLU A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 ALA B 354 REMARK 465 LYS B 355 REMARK 465 LEU B 356 REMARK 465 GLU B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 2 CG ASN A 2 OD1 0.148 REMARK 500 GLU A 160 CG GLU A 160 CD 0.090 REMARK 500 GLU A 160 CD GLU A 160 OE2 0.092 REMARK 500 GLU A 241 CD GLU A 241 OE2 0.078 REMARK 500 GLU A 298 CD GLU A 298 OE2 -0.073 REMARK 500 TYR B 151 CE1 TYR B 151 CZ 0.082 REMARK 500 TYR B 264 CE1 TYR B 264 CZ 0.091 REMARK 500 GLU B 269 CG GLU B 269 CD 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 36 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 55 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 116 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 141 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 172 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 224 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP A 281 CB - CG - OD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 MET A 327 CG - SD - CE ANGL. DEV. = -17.5 DEGREES REMARK 500 ASP B 79 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP B 141 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 230 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 302 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLU B 353 CA - C - O ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 57.92 -141.19 REMARK 500 GLU A 174 -55.21 -124.05 REMARK 500 ARG A 206 74.73 -157.25 REMARK 500 ASP A 224 3.14 -153.04 REMARK 500 LEU A 234 -62.56 -120.12 REMARK 500 LYS B 96 57.35 -145.06 REMARK 500 PRO B 130 125.76 -35.09 REMARK 500 GLU B 174 -50.31 -128.48 REMARK 500 ARG B 206 79.37 -157.99 REMARK 500 LEU B 234 -59.12 -123.86 REMARK 500 VAL B 300 -39.55 -132.46 REMARK 500 ASP B 333 28.48 48.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BMA 502 AND MAN 503 IN CHAIN A, B PLACE THE ALTERNATE POSITIONS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B0P RELATED DB: PDB REMARK 900 RELATED ID: 5B0Q RELATED DB: PDB REMARK 900 RELATED ID: 5B0S RELATED DB: PDB DBREF 5B0R A 1 355 UNP Q92DF6 Q92DF6_LISIN 1 355 DBREF 5B0R B 1 355 UNP Q92DF6 Q92DF6_LISIN 1 355 SEQADV 5B0R LEU A 356 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R GLU A 357 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS A 358 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS A 359 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS A 360 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS A 361 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS A 362 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS A 363 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R LEU B 356 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R GLU B 357 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS B 358 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS B 359 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS B 360 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS B 361 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS B 362 UNP Q92DF6 EXPRESSION TAG SEQADV 5B0R HIS B 363 UNP Q92DF6 EXPRESSION TAG SEQRES 1 A 363 MET ASN ILE TYR ARG TYR GLU GLU ASN PRO LEU ILE THR SEQRES 2 A 363 PRO LEU ASP VAL LYS PRO ILE HIS GLU GLY PHE GLU VAL SEQRES 3 A 363 ILE GLY ALA PHE ASN GLY GLY VAL ALA GLU TYR ASN GLY SEQRES 4 A 363 GLU VAL LEU LEU LEU LEU ARG VAL ALA GLU LYS PRO VAL SEQRES 5 A 363 SER GLU ASP PRO GLU ILE VAL LEU ALA PRO VAL TYR ASN SEQRES 6 A 363 ALA LYS ASN LYS GLU LEU GLU LEU GLN SER PHE ARG LEU SEQRES 7 A 363 ASP ASP GLU ASN TYR ASP PHE GLU ASP PRO ARG MET ILE SEQRES 8 A 363 ARG SER LYS ALA LYS LEU GLU GLY PHE SER TYR LEU THR SEQRES 9 A 363 SER LEU SER TYR ILE ARG ILE ALA ARG SER LYS ASP GLY SEQRES 10 A 363 HIS HIS PHE THR LEU ASP GLU LYS PRO PHE LEU TYR PRO SEQRES 11 A 363 PHE ASN GLU TYR GLN THR PHE GLY ILE GLU ASP ALA ARG SEQRES 12 A 363 VAL THR GLN ILE GLY ASP THR TYR HIS VAL ASN PHE SER SEQRES 13 A 363 ALA VAL SER GLU PHE GLY VAL ALA ASP ALA LEU VAL THR SEQRES 14 A 363 THR LYS ASP PHE GLU ASN LEU GLU TYR GLN GLY ASN ILE SEQRES 15 A 363 PHE ALA PRO GLU ASN LYS ASP VAL LEU ILE PHE PRO GLU SEQRES 16 A 363 LYS ILE ASN GLY LYS TYR TYR ALA LEU HIS ARG PRO SER SEQRES 17 A 363 LEU LYS SER ILE GLY ASN LEU ASP ILE TRP ILE ALA SER SEQRES 18 A 363 SER PRO ASP LEU ARG SER PHE GLY ASP HIS ARG HIS LEU SEQRES 19 A 363 LEU GLY ILE ARG PRO GLY GLU TYR ASP SER GLY ARG VAL SEQRES 20 A 363 GLY GLY GLY CYS VAL PRO ILE LYS THR GLU GLU GLY TRP SEQRES 21 A 363 LEU ILE LEU TYR HIS GLY ALA THR GLU GLU ASN ARG TYR SEQRES 22 A 363 VAL MET GLY ALA ALA LEU LEU ASP LEU ASN ASP PRO THR SEQRES 23 A 363 ILE VAL LEU LYS ARG THR LYS THR PRO ILE LEU GLU PRO SEQRES 24 A 363 VAL ALA ASP TYR GLU LYS ASN GLY PHE PHE GLY ASP VAL SEQRES 25 A 363 VAL PHE ALA CYS GLY ALA ILE GLN GLU GLY ASP THR LEU SEQRES 26 A 363 HIS MET TYR TYR GLY VAL ALA ASP THR SER MET ALA GLY SEQRES 27 A 363 CYS ASP MET LYS ILE SER GLU ILE LEU HIS GLN LEU GLU SEQRES 28 A 363 VAL GLU ALA LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 363 MET ASN ILE TYR ARG TYR GLU GLU ASN PRO LEU ILE THR SEQRES 2 B 363 PRO LEU ASP VAL LYS PRO ILE HIS GLU GLY PHE GLU VAL SEQRES 3 B 363 ILE GLY ALA PHE ASN GLY GLY VAL ALA GLU TYR ASN GLY SEQRES 4 B 363 GLU VAL LEU LEU LEU LEU ARG VAL ALA GLU LYS PRO VAL SEQRES 5 B 363 SER GLU ASP PRO GLU ILE VAL LEU ALA PRO VAL TYR ASN SEQRES 6 B 363 ALA LYS ASN LYS GLU LEU GLU LEU GLN SER PHE ARG LEU SEQRES 7 B 363 ASP ASP GLU ASN TYR ASP PHE GLU ASP PRO ARG MET ILE SEQRES 8 B 363 ARG SER LYS ALA LYS LEU GLU GLY PHE SER TYR LEU THR SEQRES 9 B 363 SER LEU SER TYR ILE ARG ILE ALA ARG SER LYS ASP GLY SEQRES 10 B 363 HIS HIS PHE THR LEU ASP GLU LYS PRO PHE LEU TYR PRO SEQRES 11 B 363 PHE ASN GLU TYR GLN THR PHE GLY ILE GLU ASP ALA ARG SEQRES 12 B 363 VAL THR GLN ILE GLY ASP THR TYR HIS VAL ASN PHE SER SEQRES 13 B 363 ALA VAL SER GLU PHE GLY VAL ALA ASP ALA LEU VAL THR SEQRES 14 B 363 THR LYS ASP PHE GLU ASN LEU GLU TYR GLN GLY ASN ILE SEQRES 15 B 363 PHE ALA PRO GLU ASN LYS ASP VAL LEU ILE PHE PRO GLU SEQRES 16 B 363 LYS ILE ASN GLY LYS TYR TYR ALA LEU HIS ARG PRO SER SEQRES 17 B 363 LEU LYS SER ILE GLY ASN LEU ASP ILE TRP ILE ALA SER SEQRES 18 B 363 SER PRO ASP LEU ARG SER PHE GLY ASP HIS ARG HIS LEU SEQRES 19 B 363 LEU GLY ILE ARG PRO GLY GLU TYR ASP SER GLY ARG VAL SEQRES 20 B 363 GLY GLY GLY CYS VAL PRO ILE LYS THR GLU GLU GLY TRP SEQRES 21 B 363 LEU ILE LEU TYR HIS GLY ALA THR GLU GLU ASN ARG TYR SEQRES 22 B 363 VAL MET GLY ALA ALA LEU LEU ASP LEU ASN ASP PRO THR SEQRES 23 B 363 ILE VAL LEU LYS ARG THR LYS THR PRO ILE LEU GLU PRO SEQRES 24 B 363 VAL ALA ASP TYR GLU LYS ASN GLY PHE PHE GLY ASP VAL SEQRES 25 B 363 VAL PHE ALA CYS GLY ALA ILE GLN GLU GLY ASP THR LEU SEQRES 26 B 363 HIS MET TYR TYR GLY VAL ALA ASP THR SER MET ALA GLY SEQRES 27 B 363 CYS ASP MET LYS ILE SER GLU ILE LEU HIS GLN LEU GLU SEQRES 28 B 363 VAL GLU ALA LYS LEU GLU HIS HIS HIS HIS HIS HIS HET BMA C 1 12 HET MAN C 1 12 HET BMA C 2 11 HET BMA D 1 12 HET MAN D 1 12 HET BMA D 2 11 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET GOL A 507 6 HET GOL A 508 6 HET MES A 509 12 HET SO4 B 504 5 HET SO4 B 505 5 HET SO4 B 506 5 HET SO4 B 507 5 HET SO4 B 508 5 HET GOL B 509 6 HET GOL B 510 6 HET MES B 511 12 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BMA 4(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 5 SO4 8(O4 S 2-) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 10 MES 2(C6 H13 N O4 S) FORMUL 19 HOH *521(H2 O) HELIX 1 AA1 THR A 13 VAL A 17 5 5 HELIX 2 AA2 ALA A 301 ASN A 306 1 6 HELIX 3 AA3 ILE A 343 GLU A 353 1 11 HELIX 4 AA4 THR B 13 VAL B 17 5 5 HELIX 5 AA5 ALA B 301 ASN B 306 1 6 HELIX 6 AA6 ILE B 343 GLU B 353 1 11 SHEET 1 AA1 4 TYR A 4 ARG A 5 0 SHEET 2 AA1 4 SER A 335 LYS A 342 -1 O ASP A 340 N TYR A 4 SHEET 3 AA1 4 THR A 324 VAL A 331 -1 N LEU A 325 O MET A 341 SHEET 4 AA1 4 VAL A 313 GLU A 321 -1 N ILE A 319 O HIS A 326 SHEET 1 AA2 4 PHE A 24 TYR A 37 0 SHEET 2 AA2 4 GLU A 40 PRO A 51 -1 O LEU A 42 N ALA A 35 SHEET 3 AA2 4 LEU A 106 SER A 114 -1 O ALA A 112 N LEU A 43 SHEET 4 AA2 4 THR A 121 LEU A 122 -1 O THR A 121 N ARG A 113 SHEET 1 AA3 2 ILE A 58 ASN A 65 0 SHEET 2 AA3 2 GLU A 70 ARG A 77 -1 O GLU A 72 N VAL A 63 SHEET 1 AA4 3 TYR A 83 ASP A 84 0 SHEET 2 AA4 3 MET A 90 SER A 93 -1 O ARG A 92 N ASP A 84 SHEET 3 AA4 3 TYR A 102 LEU A 103 -1 O TYR A 102 N ILE A 91 SHEET 1 AA5 4 GLY A 138 ILE A 147 0 SHEET 2 AA5 4 THR A 150 SER A 159 -1 O ASN A 154 N ARG A 143 SHEET 3 AA5 4 GLY A 162 THR A 170 -1 O VAL A 168 N VAL A 153 SHEET 4 AA5 4 GLU A 177 PHE A 183 -1 O GLN A 179 N LEU A 167 SHEET 1 AA6 8 LEU A 191 ILE A 192 0 SHEET 2 AA6 8 TYR A 201 HIS A 205 -1 O LEU A 204 N LEU A 191 SHEET 3 AA6 8 ILE A 217 SER A 222 -1 O SER A 222 N TYR A 201 SHEET 4 AA6 8 SER A 227 LEU A 235 -1 O GLY A 229 N SER A 221 SHEET 5 AA6 8 SER B 227 LEU B 235 -1 O PHE B 228 N PHE A 228 SHEET 6 AA6 8 ILE B 217 SER B 222 -1 N ILE B 219 O ARG B 232 SHEET 7 AA6 8 TYR B 201 HIS B 205 -1 N TYR B 201 O SER B 222 SHEET 8 AA6 8 LEU B 191 ILE B 192 -1 N LEU B 191 O LEU B 204 SHEET 1 AA7 3 ARG A 246 GLY A 249 0 SHEET 2 AA7 3 GLY A 259 ALA A 267 -1 O HIS A 265 N GLY A 248 SHEET 3 AA7 3 ILE A 254 THR A 256 -1 N ILE A 254 O LEU A 261 SHEET 1 AA8 4 ARG A 246 GLY A 249 0 SHEET 2 AA8 4 GLY A 259 ALA A 267 -1 O HIS A 265 N GLY A 248 SHEET 3 AA8 4 TYR A 273 LEU A 280 -1 O ALA A 278 N ILE A 262 SHEET 4 AA8 4 VAL A 288 ARG A 291 -1 O LEU A 289 N LEU A 279 SHEET 1 AA9 4 TYR B 4 ARG B 5 0 SHEET 2 AA9 4 SER B 335 LYS B 342 -1 O ASP B 340 N TYR B 4 SHEET 3 AA9 4 THR B 324 VAL B 331 -1 N LEU B 325 O MET B 341 SHEET 4 AA9 4 VAL B 313 GLU B 321 -1 N ILE B 319 O HIS B 326 SHEET 1 AB1 4 PHE B 24 TYR B 37 0 SHEET 2 AB1 4 GLU B 40 PRO B 51 -1 O LEU B 42 N ALA B 35 SHEET 3 AB1 4 LEU B 106 SER B 114 -1 O TYR B 108 N VAL B 47 SHEET 4 AB1 4 THR B 121 LEU B 122 -1 O THR B 121 N ARG B 113 SHEET 1 AB2 2 ILE B 58 ASN B 65 0 SHEET 2 AB2 2 GLU B 70 ARG B 77 -1 O GLU B 72 N VAL B 63 SHEET 1 AB3 3 TYR B 83 ASP B 84 0 SHEET 2 AB3 3 MET B 90 SER B 93 -1 O ARG B 92 N ASP B 84 SHEET 3 AB3 3 TYR B 102 LEU B 103 -1 O TYR B 102 N ILE B 91 SHEET 1 AB4 4 GLY B 138 ILE B 147 0 SHEET 2 AB4 4 THR B 150 SER B 159 -1 O ASN B 154 N ARG B 143 SHEET 3 AB4 4 GLY B 162 THR B 170 -1 O THR B 170 N TYR B 151 SHEET 4 AB4 4 LEU B 176 PHE B 183 -1 O GLN B 179 N LEU B 167 SHEET 1 AB5 3 ARG B 246 GLY B 249 0 SHEET 2 AB5 3 GLY B 259 ALA B 267 -1 O HIS B 265 N GLY B 248 SHEET 3 AB5 3 ILE B 254 THR B 256 -1 N ILE B 254 O LEU B 261 SHEET 1 AB6 4 ARG B 246 GLY B 249 0 SHEET 2 AB6 4 GLY B 259 ALA B 267 -1 O HIS B 265 N GLY B 248 SHEET 3 AB6 4 TYR B 273 LEU B 280 -1 O ALA B 278 N ILE B 262 SHEET 4 AB6 4 VAL B 288 ARG B 291 -1 O LEU B 289 N LEU B 279 LINK O2 ABMA C 1 C1 BMA C 2 1555 1555 1.45 LINK O2 BMAN C 1 C1 BMA C 2 1555 1555 1.45 LINK O2 ABMA D 1 C1 BMA D 2 1555 1555 1.43 LINK O2 BMAN D 1 C1 BMA D 2 1555 1555 1.43 CISPEP 1 ASN A 9 PRO A 10 0 -12.07 CISPEP 2 PRO A 185 GLU A 186 0 2.50 CISPEP 3 ASN B 9 PRO B 10 0 -2.98 CISPEP 4 PRO B 185 GLU B 186 0 1.49 CRYST1 145.773 145.773 105.774 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006860 0.003961 0.000000 0.00000 SCALE2 0.000000 0.007921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009454 0.00000