HEADER IMMUNE SYSTEM 02-DEC-15 5B1C TITLE CRYSTAL STRUCTURE OF DEN4 ED3 MUTANT WITH L387I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN E; COMPND 3 CHAIN: B, A, C; COMPND 4 FRAGMENT: DOMAIN 3, UNP RESIDUES 575-679; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4 DOMINICA/814669/1981; SOURCE 3 ORGANISM_COMMON: DENV-4; SOURCE 4 ORGANISM_TAXID: 408871; SOURCE 5 STRAIN: DOMINICA/814669/1981; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HYDROPHOBIC CORE RESIDUE, SIDE-CHAIN ROTAMERS, POINT MUTATION, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.R.KULKARNI,N.NUMOTO,N.ITO,Y.KURODA REVDAT 4 08-NOV-23 5B1C 1 REMARK REVDAT 3 26-FEB-20 5B1C 1 JRNL REMARK REVDAT 2 09-MAR-16 5B1C 1 JRNL REVDAT 1 24-FEB-16 5B1C 0 JRNL AUTH M.R.KULKARNI,N.NUMOTO,N.ITO,Y.KURODA JRNL TITL MODELING AND EXPERIMENTAL ASSESSMENT OF A BURIED LEU-ILE JRNL TITL 2 MUTATION IN DENGUE ENVELOPE DOMAIN III JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 471 163 2016 JRNL REFN ESSN 1090-2104 JRNL PMID 26826384 JRNL DOI 10.1016/J.BBRC.2016.01.159 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8438 - 4.7054 0.98 2725 147 0.2030 0.2117 REMARK 3 2 4.7054 - 3.7363 1.00 2707 126 0.1859 0.2300 REMARK 3 3 3.7363 - 3.2645 1.00 2633 143 0.2001 0.2465 REMARK 3 4 3.2645 - 2.9662 1.00 2638 152 0.2173 0.2102 REMARK 3 5 2.9662 - 2.7537 1.00 2637 128 0.2281 0.2174 REMARK 3 6 2.7537 - 2.5914 1.00 2613 134 0.2515 0.3152 REMARK 3 7 2.5914 - 2.4617 1.00 2629 131 0.2344 0.2684 REMARK 3 8 2.4617 - 2.3545 1.00 2607 151 0.2466 0.2634 REMARK 3 9 2.3545 - 2.2639 1.00 2594 142 0.2396 0.2710 REMARK 3 10 2.2639 - 2.1858 1.00 2620 136 0.2432 0.2536 REMARK 3 11 2.1858 - 2.1175 1.00 2589 138 0.2507 0.2668 REMARK 3 12 2.1175 - 2.0570 1.00 2593 139 0.2695 0.3245 REMARK 3 13 2.0570 - 2.0028 0.96 2523 124 0.2803 0.3059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2318 REMARK 3 ANGLE : 1.176 3135 REMARK 3 CHIRALITY : 0.048 358 REMARK 3 PLANARITY : 0.008 395 REMARK 3 DIHEDRAL : 9.988 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1300000355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 FOR THE DATA SET : 48.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3WE1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, TRIS. HCL, REMARK 280 DIOXANE, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.43150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.43150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.54500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.43150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.54500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.43150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 130.86300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 571 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 582 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 618 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 292 REMARK 465 SER B 293 REMARK 465 GLY B 294 REMARK 465 MET B 295 REMARK 465 SER B 296 REMARK 465 SER B 394 REMARK 465 SER B 395 REMARK 465 ILE B 396 REMARK 465 GLY B 397 REMARK 465 LYS B 398 REMARK 465 GLY A 292 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 465 ILE A 396 REMARK 465 GLY A 397 REMARK 465 LYS A 398 REMARK 465 GLY C 292 REMARK 465 SER C 293 REMARK 465 GLY C 294 REMARK 465 MET C 295 REMARK 465 SER C 394 REMARK 465 SER C 395 REMARK 465 ILE C 396 REMARK 465 GLY C 397 REMARK 465 LYS C 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 546 O HOH A 572 1.85 REMARK 500 O HOH B 588 O HOH B 613 1.96 REMARK 500 O HOH A 580 O HOH A 590 2.07 REMARK 500 O HOH A 530 O HOH A 579 2.14 REMARK 500 O HOH B 604 O HOH A 569 2.14 REMARK 500 O HOH C 528 O HOH C 531 2.15 REMARK 500 O HOH A 582 O HOH A 587 2.17 REMARK 500 O HOH B 554 O HOH A 523 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 353 107.02 -31.42 REMARK 500 THR A 353 108.34 -30.46 REMARK 500 THR C 353 109.15 -32.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 591 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH A 593 DISTANCE = 8.46 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WE1 RELATED DB: PDB REMARK 900 3WE1 CONTAINS WILD TYPE DENGUE 4 ENVELOPE PROTEIN DOMAIN 3 (DEN4 REMARK 900 ED3) REMARK 900 RELATED ID: 4X42 RELATED DB: PDB REMARK 900 4X42 CONTAINS DEN4 ED3 MUTANT WITH EPITOPE TWO RESIDUES SUBSTITUTED REMARK 900 FROM DEN3 ED3 DBREF 5B1C B 294 398 UNP P09866 POLG_DEN4D 575 679 DBREF 5B1C A 294 398 UNP P09866 POLG_DEN4D 575 679 DBREF 5B1C C 294 398 UNP P09866 POLG_DEN4D 575 679 SEQADV 5B1C GLY B 292 UNP P09866 EXPRESSION TAG SEQADV 5B1C SER B 293 UNP P09866 EXPRESSION TAG SEQADV 5B1C ILE B 387 UNP P09866 LEU 668 ENGINEERED MUTATION SEQADV 5B1C GLY A 292 UNP P09866 EXPRESSION TAG SEQADV 5B1C SER A 293 UNP P09866 EXPRESSION TAG SEQADV 5B1C ILE A 387 UNP P09866 LEU 668 ENGINEERED MUTATION SEQADV 5B1C GLY C 292 UNP P09866 EXPRESSION TAG SEQADV 5B1C SER C 293 UNP P09866 EXPRESSION TAG SEQADV 5B1C ILE C 387 UNP P09866 LEU 668 ENGINEERED MUTATION SEQRES 1 B 107 GLY SER GLY MET SER TYR THR MET CYS SER GLY LYS PHE SEQRES 2 B 107 SER ILE ASP LYS GLU MET ALA GLU THR GLN HIS GLY THR SEQRES 3 B 107 THR VAL VAL LYS VAL LYS TYR GLU GLY ALA GLY ALA PRO SEQRES 4 B 107 CYS LYS VAL PRO ILE GLU ILE ARG ASP VAL ASN LYS GLU SEQRES 5 B 107 LYS VAL VAL GLY ARG ILE ILE SER SER THR PRO LEU ALA SEQRES 6 B 107 GLU ASN THR ASN SER VAL THR ASN ILE GLU LEU GLU PRO SEQRES 7 B 107 PRO PHE GLY ASP SER TYR ILE VAL ILE GLY VAL GLY ASN SEQRES 8 B 107 SER ALA LEU THR ILE HIS TRP PHE ARG LYS GLY SER SER SEQRES 9 B 107 ILE GLY LYS SEQRES 1 A 107 GLY SER GLY MET SER TYR THR MET CYS SER GLY LYS PHE SEQRES 2 A 107 SER ILE ASP LYS GLU MET ALA GLU THR GLN HIS GLY THR SEQRES 3 A 107 THR VAL VAL LYS VAL LYS TYR GLU GLY ALA GLY ALA PRO SEQRES 4 A 107 CYS LYS VAL PRO ILE GLU ILE ARG ASP VAL ASN LYS GLU SEQRES 5 A 107 LYS VAL VAL GLY ARG ILE ILE SER SER THR PRO LEU ALA SEQRES 6 A 107 GLU ASN THR ASN SER VAL THR ASN ILE GLU LEU GLU PRO SEQRES 7 A 107 PRO PHE GLY ASP SER TYR ILE VAL ILE GLY VAL GLY ASN SEQRES 8 A 107 SER ALA LEU THR ILE HIS TRP PHE ARG LYS GLY SER SER SEQRES 9 A 107 ILE GLY LYS SEQRES 1 C 107 GLY SER GLY MET SER TYR THR MET CYS SER GLY LYS PHE SEQRES 2 C 107 SER ILE ASP LYS GLU MET ALA GLU THR GLN HIS GLY THR SEQRES 3 C 107 THR VAL VAL LYS VAL LYS TYR GLU GLY ALA GLY ALA PRO SEQRES 4 C 107 CYS LYS VAL PRO ILE GLU ILE ARG ASP VAL ASN LYS GLU SEQRES 5 C 107 LYS VAL VAL GLY ARG ILE ILE SER SER THR PRO LEU ALA SEQRES 6 C 107 GLU ASN THR ASN SER VAL THR ASN ILE GLU LEU GLU PRO SEQRES 7 C 107 PRO PHE GLY ASP SER TYR ILE VAL ILE GLY VAL GLY ASN SEQRES 8 C 107 SER ALA LEU THR ILE HIS TRP PHE ARG LYS GLY SER SER SEQRES 9 C 107 ILE GLY LYS HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 C 401 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *243(H2 O) HELIX 1 AA1 VAL B 380 ALA B 384 5 5 HELIX 2 AA2 VAL C 380 ALA C 384 5 5 SHEET 1 AA1 3 PHE B 304 GLU B 312 0 SHEET 2 AA1 3 THR B 318 TYR B 324 -1 O LYS B 323 N SER B 305 SHEET 3 AA1 3 VAL B 362 LEU B 367 -1 O THR B 363 N VAL B 322 SHEET 1 AA2 2 CYS B 331 LYS B 332 0 SHEET 2 AA2 2 LEU B 355 ALA B 356 -1 O ALA B 356 N CYS B 331 SHEET 1 AA3 4 ILE B 335 ARG B 338 0 SHEET 2 AA3 4 GLY B 372 ILE B 378 -1 O VAL B 377 N GLU B 336 SHEET 3 AA3 4 LEU B 385 ARG B 391 -1 O ARG B 391 N GLY B 372 SHEET 4 AA3 4 GLY A 294 MET A 295 -1 O GLY A 294 N PHE B 390 SHEET 1 AA4 3 PHE A 304 GLU A 312 0 SHEET 2 AA4 3 THR A 318 TYR A 324 -1 O LYS A 323 N SER A 305 SHEET 3 AA4 3 VAL A 362 LEU A 367 -1 O THR A 363 N VAL A 322 SHEET 1 AA5 2 CYS A 331 LYS A 332 0 SHEET 2 AA5 2 LEU A 355 ALA A 356 -1 O ALA A 356 N CYS A 331 SHEET 1 AA6 3 ILE A 335 ARG A 338 0 SHEET 2 AA6 3 GLY A 372 ILE A 378 -1 O VAL A 377 N GLU A 336 SHEET 3 AA6 3 LEU A 385 ARG A 391 -1 O ILE A 387 N ILE A 376 SHEET 1 AA7 3 PHE C 304 GLU C 312 0 SHEET 2 AA7 3 THR C 318 TYR C 324 -1 O LYS C 323 N SER C 305 SHEET 3 AA7 3 VAL C 362 LEU C 367 -1 O ILE C 365 N VAL C 320 SHEET 1 AA8 2 CYS C 331 LYS C 332 0 SHEET 2 AA8 2 LEU C 355 ALA C 356 -1 O ALA C 356 N CYS C 331 SHEET 1 AA9 3 ILE C 335 ARG C 338 0 SHEET 2 AA9 3 GLY C 372 ILE C 378 -1 O VAL C 377 N GLU C 336 SHEET 3 AA9 3 LEU C 385 ARG C 391 -1 O ARG C 391 N GLY C 372 SSBOND 1 CYS B 300 CYS B 331 1555 1555 2.07 SSBOND 2 CYS A 300 CYS A 331 1555 1555 2.07 SSBOND 3 CYS C 300 CYS C 331 1555 1555 2.04 CISPEP 1 ALA B 329 PRO B 330 0 3.41 CISPEP 2 ALA A 329 PRO A 330 0 1.19 CISPEP 3 ALA C 329 PRO C 330 0 2.01 SITE 1 AC1 5 VAL B 346 GLY B 347 ARG B 348 ILE B 349 SITE 2 AC1 5 HOH B 536 SITE 1 AC2 4 ARG B 338 LYS B 344 THR B 353 HOH B 565 SITE 1 AC3 4 VAL A 346 GLY A 347 ARG A 348 ILE A 349 SITE 1 AC4 2 ARG A 338 THR C 353 SITE 1 AC5 4 VAL C 346 GLY C 347 ARG C 348 ILE C 349 CRYST1 125.090 130.863 64.585 90.00 90.00 90.00 C 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015483 0.00000