HEADER OXIDOREDUCTASE 04-DEC-15 5B1K TITLE CRYSTAL STRUCTURE OF THE CHLORIDE-BOUND FORM OF BLUE COPPER NITRITE TITLE 2 REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-CONTAINING NITRITE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE,NITRITE COMPND 5 REDUCTASE (NIR); COMPND 6 EC: 1.7.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCALIGENES XYLOSOXYDANS XYLOSOXYDANS; SOURCE 3 ORGANISM_COMMON: ACHROMOBACTER XYLOSOXIDANS; SOURCE 4 ORGANISM_TAXID: 85698; SOURCE 5 GENE: NIR, NIRK, ERS451415_02178; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23C KEYWDS COPPER NITRITE REDUCTASE, CHLORIDE ION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NOJIRI REVDAT 3 20-MAR-24 5B1K 1 LINK REVDAT 2 26-FEB-20 5B1K 1 REMARK REVDAT 1 23-NOV-16 5B1K 0 JRNL AUTH M.NOJIRI JRNL TITL STRUCTURE AND FUNCTION OF COPPER NITRITE REDUCTASE JRNL REF METALLOENZYMES IN 91 2016 JRNL REF 2 DENITRIFICATION: JRNL REF 3 APPLICATIONS AND JRNL REF 4 ENVIRONMENTAL IMPACTS JRNL PUBL RSC PUBLISHING JRNL REFN JRNL DOI 10.1039/9781782623762-00091 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 73010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 848 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2669 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2549 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3626 ; 1.202 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5896 ; 0.899 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;33.171 ;24.495 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;11.560 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2999 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 584 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 1.428 ; 1.838 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1340 ; 1.428 ; 1.836 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1676 ; 1.885 ; 2.762 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1677 ; 1.884 ; 2.764 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 1.454 ; 2.071 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1328 ; 1.454 ; 2.071 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1948 ; 1.830 ; 2.984 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3074 ; 3.199 ;15.866 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2928 ; 2.763 ;15.151 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5218 ; 3.095 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 87 ;39.227 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5361 ;11.048 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5B1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1300000363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX325HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86291 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 90.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CHLORIDE, MAGNESIUM REMARK 280 CHLORIDE, LIQUID DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.53650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.53650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.53650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 52.35150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -90.67546 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 104.70300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 798 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 0 REMARK 465 GLN A 1 REMARK 465 ARG A 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 505 O HOH A 518 1.94 REMARK 500 O HOH A 502 O HOH A 619 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 518 O HOH A 725 3655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 24 -91.17 -87.10 REMARK 500 ASN A 90 -166.42 -161.03 REMARK 500 ALA A 131 65.53 -154.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 300 ASN A 301 144.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 799 DISTANCE = 8.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 ND1 REMARK 620 2 CYS A 130 SG 126.1 REMARK 620 3 HIS A 139 ND1 100.7 120.2 REMARK 620 4 MET A 144 SD 84.2 110.6 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 129 NE2 112.5 REMARK 620 3 HIS A 300 NE2 74.0 99.0 REMARK 620 4 CL A 403 CL 145.3 96.4 121.3 REMARK 620 5 HOH A 501 O 89.3 110.9 149.6 61.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B1J RELATED DB: PDB DBREF 5B1K A 1 336 UNP O68601 O68601_ALCXX 25 360 SEQADV 5B1K PRO A 0 UNP O68601 EXPRESSION TAG SEQRES 1 A 337 PRO GLN ASP ALA ASP LYS LEU PRO HIS THR LYS VAL THR SEQRES 2 A 337 LEU VAL ALA PRO PRO GLN VAL HIS PRO HIS GLU GLN ALA SEQRES 3 A 337 THR LYS SER GLY PRO LYS VAL VAL GLU PHE THR MET THR SEQRES 4 A 337 ILE GLU GLU LYS LYS MET VAL ILE ASP ASP LYS GLY THR SEQRES 5 A 337 THR LEU GLN ALA MET THR PHE ASN GLY SER MET PRO GLY SEQRES 6 A 337 PRO THR LEU VAL VAL HIS GLU GLY ASP TYR VAL GLN LEU SEQRES 7 A 337 THR LEU VAL ASN PRO ALA THR ASN ALA MET PRO HIS ASN SEQRES 8 A 337 VAL ASP PHE HIS GLY ALA THR GLY ALA LEU GLY GLY ALA SEQRES 9 A 337 LYS LEU THR ASN VAL ASN PRO GLY GLU GLN ALA THR LEU SEQRES 10 A 337 ARG PHE LYS ALA ASP ARG SER GLY THR PHE VAL TYR HIS SEQRES 11 A 337 CYS ALA PRO GLU GLY MET VAL PRO TRP HIS VAL VAL SER SEQRES 12 A 337 GLY MET SER GLY THR LEU MET VAL LEU PRO ARG ASP GLY SEQRES 13 A 337 LEU LYS ASP PRO GLN GLY LYS PRO LEU HIS TYR ASP ARG SEQRES 14 A 337 ALA TYR THR ILE GLY GLU PHE ASP LEU TYR ILE PRO LYS SEQRES 15 A 337 GLY PRO ASP GLY LYS TYR LYS ASP TYR ALA THR LEU ALA SEQRES 16 A 337 GLU SER TYR GLY ASP THR VAL GLN VAL MET ARG THR LEU SEQRES 17 A 337 THR PRO SER HIS ILE VAL PHE ASN GLY LYS VAL GLY ALA SEQRES 18 A 337 LEU THR GLY ALA ASN ALA LEU THR ALA LYS VAL GLY GLU SEQRES 19 A 337 THR VAL LEU LEU ILE HIS SER GLN ALA ASN ARG ASP THR SEQRES 20 A 337 ARG PRO HIS LEU ILE GLY GLY HIS GLY ASP TRP VAL TRP SEQRES 21 A 337 GLU THR GLY LYS PHE ALA ASN PRO PRO GLN ARG ASP LEU SEQRES 22 A 337 GLU THR TRP PHE ILE ARG GLY GLY SER ALA GLY ALA ALA SEQRES 23 A 337 LEU TYR THR PHE LYS GLN PRO GLY VAL TYR ALA TYR LEU SEQRES 24 A 337 ASN HIS ASN LEU ILE GLU ALA PHE GLU LEU GLY ALA ALA SEQRES 25 A 337 GLY HIS ILE LYS VAL GLU GLY LYS TRP ASN ASP ASP LEU SEQRES 26 A 337 MET LYS GLN ILE LYS ALA PRO ALA PRO ILE PRO ARG HET CU A 401 1 HET CU A 402 1 HET CL A 403 1 HET PG4 A 404 13 HET PG4 A 405 13 HETNAM CU COPPER (II) ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 CU 2(CU 2+) FORMUL 4 CL CL 1- FORMUL 5 PG4 2(C8 H18 O5) FORMUL 7 HOH *299(H2 O) HELIX 1 AA1 GLY A 98 THR A 106 5 9 HELIX 2 AA2 MET A 135 SER A 142 1 8 HELIX 3 AA3 THR A 192 THR A 206 1 15 HELIX 4 AA4 THR A 222 ALA A 226 5 5 HELIX 5 AA5 ASN A 301 GLU A 307 1 7 SHEET 1 AA1 3 HIS A 8 LYS A 10 0 SHEET 2 AA1 3 VAL A 32 VAL A 45 1 O GLU A 34 N THR A 9 SHEET 3 AA1 3 THR A 52 PHE A 58 -1 O LEU A 53 N MET A 44 SHEET 1 AA2 4 HIS A 8 LYS A 10 0 SHEET 2 AA2 4 VAL A 32 VAL A 45 1 O GLU A 34 N THR A 9 SHEET 3 AA2 4 TYR A 74 ASN A 81 1 O TYR A 74 N VAL A 33 SHEET 4 AA2 4 GLU A 112 LYS A 119 -1 O ALA A 114 N LEU A 79 SHEET 1 AA3 4 LEU A 67 HIS A 70 0 SHEET 2 AA3 4 SER A 145 LEU A 151 1 O MET A 149 N LEU A 67 SHEET 3 AA3 4 GLY A 124 HIS A 129 -1 N GLY A 124 O VAL A 150 SHEET 4 AA3 4 ASP A 92 PHE A 93 -1 N ASP A 92 O HIS A 129 SHEET 1 AA4 2 LEU A 156 LYS A 157 0 SHEET 2 AA4 2 PRO A 163 LEU A 164 -1 O LEU A 164 N LEU A 156 SHEET 1 AA5 6 HIS A 211 PHE A 214 0 SHEET 2 AA5 6 ARG A 168 LEU A 177 -1 N LEU A 177 O HIS A 211 SHEET 3 AA5 6 THR A 234 GLN A 241 1 O ILE A 238 N ILE A 172 SHEET 4 AA5 6 SER A 281 THR A 288 -1 O ALA A 285 N LEU A 237 SHEET 5 AA5 6 GLY A 255 TRP A 259 -1 N TRP A 257 O LEU A 286 SHEET 6 AA5 6 GLN A 269 LEU A 272 -1 O GLN A 269 N VAL A 258 SHEET 1 AA6 4 LEU A 227 LYS A 230 0 SHEET 2 AA6 4 ALA A 311 GLU A 317 1 O LYS A 315 N LEU A 227 SHEET 3 AA6 4 GLY A 293 ASN A 299 -1 N TYR A 295 O ILE A 314 SHEET 4 AA6 4 PRO A 248 ILE A 251 -1 N ILE A 251 O ALA A 296 LINK ND1 HIS A 89 CU CU A 401 1555 1555 2.11 LINK NE2 HIS A 94 CU CU A 402 1555 1555 2.08 LINK NE2 HIS A 129 CU CU A 402 1555 1555 2.11 LINK SG CYS A 130 CU CU A 401 1555 1555 2.08 LINK ND1 HIS A 139 CU CU A 401 1555 1555 2.13 LINK SD MET A 144 CU CU A 401 1555 1555 2.55 LINK NE2 HIS A 300 CU CU A 402 1555 3655 2.06 LINK CU CU A 402 CL CL A 403 1555 1555 2.52 LINK CU CU A 402 O HOH A 501 1555 1555 2.26 CISPEP 1 PRO A 16 PRO A 17 0 6.79 CISPEP 2 MET A 62 PRO A 63 0 -7.28 CISPEP 3 MET A 62 PRO A 63 0 -8.43 SITE 1 AC1 4 HIS A 89 CYS A 130 HIS A 139 MET A 144 SITE 1 AC2 5 HIS A 94 HIS A 129 HIS A 300 CL A 403 SITE 2 AC2 5 HOH A 501 SITE 1 AC3 5 HIS A 129 ILE A 251 HIS A 300 CU A 402 SITE 2 AC3 5 HOH A 501 SITE 1 AC4 3 GLU A 133 MET A 135 ALA A 194 SITE 1 AC5 5 VAL A 294 ALA A 296 PHE A 306 HIS A 313 SITE 2 AC5 5 HOH A 721 CRYST1 104.703 104.703 63.073 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009551 0.005514 0.000000 0.00000 SCALE2 0.000000 0.011028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015855 0.00000