HEADER CARBOHYDRATE BINDING PROTEIN 21-DEC-15 5B1W TITLE CRYSTAL STRUCTURE OF HUMAN DENDRITIC CELL INHIBITORY RECEPTOR (DCIR) TITLE 2 C-TYPE LECTIN DOMAIN IN LIGAND-FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 106-203; COMPND 5 SYNONYM: C-TYPE LECTIN DDB27,C-TYPE LECTIN SUPERFAMILY MEMBER 6, COMPND 6 DENDRITIC CELL IMMUNORECEPTOR,LECTIN-LIKE IMMUNORECEPTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLEC4A, CLECSF6, DCIR, LLIR, HDCGC13P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) KEYWDS C-TYPE LECTIN DOMAIN, INNATE IMMUNITY, CARBOHYDRATE RECOGNITION, KEYWDS 2 CARBOHYDRATE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.NAGAE,Y.YAMAGUCHI REVDAT 3 08-NOV-23 5B1W 1 LINK REVDAT 2 26-FEB-20 5B1W 1 JRNL REMARK REVDAT 1 11-MAY-16 5B1W 0 JRNL AUTH M.NAGAE,A.IKEDA,S.HANASHIMA,T.KOJIMA,N.MATSUMOTO,K.YAMAMOTO, JRNL AUTH 2 Y.YAMAGUCHI JRNL TITL CRYSTAL STRUCTURE OF HUMAN DENDRITIC CELL INHIBITORY JRNL TITL 2 RECEPTOR C-TYPE LECTIN DOMAIN REVEALS THE BINDING MODE WITH JRNL TITL 3 N-GLYCAN JRNL REF FEBS LETT. V. 590 1280 2016 JRNL REFN ISSN 0014-5793 JRNL PMID 27015765 JRNL DOI 10.1002/1873-3468.12162 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0244 - 5.2117 0.98 2774 148 0.2251 0.2496 REMARK 3 2 5.2117 - 4.1375 0.99 2661 138 0.2188 0.2381 REMARK 3 3 4.1375 - 3.6147 1.00 2653 131 0.2462 0.2977 REMARK 3 4 3.6147 - 3.2843 1.00 2615 138 0.2788 0.3253 REMARK 3 5 3.2843 - 3.0500 0.97 2574 129 0.3198 0.3403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4492 REMARK 3 ANGLE : 0.616 6030 REMARK 3 CHIRALITY : 0.043 580 REMARK 3 PLANARITY : 0.004 800 REMARK 3 DIHEDRAL : 12.588 2654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1300000379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14032 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17300 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL (PH 8.5), 0.2M SODIUM REMARK 280 ACETATE AND 30%(W/V) POLYETHYLENE GLYCOL 4,000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.24450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.91600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.24450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.91600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 104 REMARK 465 ILE A 235 REMARK 465 HIS A 236 REMARK 465 LEU A 237 REMARK 465 GLY B 104 REMARK 465 ILE B 235 REMARK 465 HIS B 236 REMARK 465 LEU B 237 REMARK 465 GLY C 104 REMARK 465 MET C 233 REMARK 465 LYS C 234 REMARK 465 ILE C 235 REMARK 465 HIS C 236 REMARK 465 LEU C 237 REMARK 465 GLY D 104 REMARK 465 MET D 233 REMARK 465 LYS D 234 REMARK 465 ILE D 235 REMARK 465 HIS D 236 REMARK 465 LEU D 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 195 OD1 ASP D 219 2.11 REMARK 500 OE1 GLU B 195 OD1 ASP B 219 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 114 -122.67 51.49 REMARK 500 ARG A 194 -1.53 77.10 REMARK 500 SER B 114 -146.39 54.90 REMARK 500 HIS B 175 79.52 -106.16 REMARK 500 SER B 188 56.72 -119.96 REMARK 500 SER B 211 81.52 40.22 REMARK 500 SER C 114 -134.30 53.28 REMARK 500 GLU C 160 31.80 -84.55 REMARK 500 HIS C 175 73.91 -100.77 REMARK 500 SER C 188 62.69 -112.85 REMARK 500 PHE C 190 49.20 -140.35 REMARK 500 SER C 211 81.67 54.12 REMARK 500 ASN D 109 -2.93 66.75 REMARK 500 SER D 114 -131.73 57.46 REMARK 500 SER D 188 53.10 -151.12 REMARK 500 SER D 211 88.00 -155.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 143 O REMARK 620 2 ASN A 145 OD1 79.1 REMARK 620 3 GLU A 149 OE1 80.6 76.1 REMARK 620 4 GLU A 149 OE2 96.0 128.4 52.7 REMARK 620 5 GLU A 231 OE1 78.8 140.2 131.4 86.5 REMARK 620 6 GLU A 231 OE2 131.4 143.2 122.8 75.1 53.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 195 OE1 REMARK 620 2 GLU A 195 OE2 53.2 REMARK 620 3 SER A 197 OG 66.5 84.8 REMARK 620 4 GLU A 201 OE2 131.2 151.0 75.1 REMARK 620 5 ASN A 218 OD1 80.5 64.8 144.7 139.6 REMARK 620 6 ASP A 219 O 125.2 142.7 131.2 63.4 78.0 REMARK 620 7 ASP A 219 OD1 56.2 105.1 88.7 95.3 82.8 71.4 REMARK 620 8 HOH A2101 O 132.7 80.0 107.2 86.2 85.7 95.1 163.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 143 O REMARK 620 2 ASN B 145 OD1 66.9 REMARK 620 3 GLU B 149 OE1 79.7 75.4 REMARK 620 4 GLU B 149 OE2 91.7 126.8 52.4 REMARK 620 5 GLU B 231 OE1 78.5 131.5 131.3 85.4 REMARK 620 6 GLU B 231 OE2 130.2 156.7 119.8 73.1 53.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 195 OE1 REMARK 620 2 GLU B 195 OE2 52.3 REMARK 620 3 SER B 197 OG 62.9 70.9 REMARK 620 4 GLU B 201 OE2 122.4 135.4 70.2 REMARK 620 5 ASN B 218 OD1 67.8 57.3 123.3 166.4 REMARK 620 6 ASP B 219 O 114.2 164.4 111.7 56.1 112.7 REMARK 620 7 ASP B 219 OD1 53.9 105.2 67.5 78.8 103.8 63.8 REMARK 620 8 HOH B2101 O 138.2 86.3 101.8 81.1 96.6 107.6 159.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL C 143 O REMARK 620 2 ASN C 145 OD1 76.1 REMARK 620 3 GLU C 149 OE1 70.8 73.0 REMARK 620 4 GLU C 149 OE2 112.0 113.9 52.9 REMARK 620 5 GLU C 231 OE1 87.4 141.9 133.4 104.1 REMARK 620 6 GLU C 231 OE2 142.4 137.3 127.3 74.5 55.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 195 OE1 REMARK 620 2 GLU C 195 OE2 53.6 REMARK 620 3 SER C 197 OG 64.9 84.6 REMARK 620 4 GLU C 201 OE2 123.1 156.4 74.5 REMARK 620 5 ASN C 218 OD1 83.5 68.9 147.2 134.4 REMARK 620 6 ASP C 219 O 115.5 139.1 129.8 64.5 70.7 REMARK 620 7 ASP C 219 OD1 63.1 113.4 86.8 76.9 86.4 57.4 REMARK 620 8 HOH C2101 O 124.9 73.4 99.4 99.0 91.4 114.1 171.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL D 143 O REMARK 620 2 ASN D 145 OD1 64.0 REMARK 620 3 GLU D 149 OE1 73.6 77.0 REMARK 620 4 GLU D 149 OE2 93.2 129.3 52.6 REMARK 620 5 GLU D 231 OE1 79.8 125.6 130.9 89.5 REMARK 620 6 GLU D 231 OE2 130.3 158.1 120.8 70.7 54.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 195 OE1 REMARK 620 2 GLU D 195 OE2 53.6 REMARK 620 3 SER D 197 OG 70.1 73.7 REMARK 620 4 GLU D 201 OE1 158.2 147.9 107.7 REMARK 620 5 GLU D 201 OE2 112.4 135.1 61.9 52.4 REMARK 620 6 ASN D 218 OD1 64.5 69.8 132.8 119.2 149.5 REMARK 620 7 ASP D 219 O 101.4 141.3 130.2 62.7 78.8 72.6 REMARK 620 8 ASP D 219 OD1 51.7 105.2 79.9 106.6 74.6 81.9 60.1 REMARK 620 9 HOH D2101 O 113.0 59.9 85.3 88.0 107.7 100.7 138.0 161.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B1X RELATED DB: PDB DBREF 5B1W A 106 237 UNP Q9UMR7 CLC4A_HUMAN 106 237 DBREF 5B1W B 106 237 UNP Q9UMR7 CLC4A_HUMAN 106 237 DBREF 5B1W C 106 237 UNP Q9UMR7 CLC4A_HUMAN 106 237 DBREF 5B1W D 106 237 UNP Q9UMR7 CLC4A_HUMAN 106 237 SEQADV 5B1W GLY A 104 UNP Q9UMR7 EXPRESSION TAG SEQADV 5B1W SER A 105 UNP Q9UMR7 EXPRESSION TAG SEQADV 5B1W GLY B 104 UNP Q9UMR7 EXPRESSION TAG SEQADV 5B1W SER B 105 UNP Q9UMR7 EXPRESSION TAG SEQADV 5B1W GLY C 104 UNP Q9UMR7 EXPRESSION TAG SEQADV 5B1W SER C 105 UNP Q9UMR7 EXPRESSION TAG SEQADV 5B1W GLY D 104 UNP Q9UMR7 EXPRESSION TAG SEQADV 5B1W SER D 105 UNP Q9UMR7 EXPRESSION TAG SEQRES 1 A 134 GLY SER CYS PRO LYS ASN TRP LYS SER PHE SER SER ASN SEQRES 2 A 134 CYS TYR PHE ILE SER THR GLU SER ALA SER TRP GLN ASP SEQRES 3 A 134 SER GLU LYS ASP CYS ALA ARG MET GLU ALA HIS LEU LEU SEQRES 4 A 134 VAL ILE ASN THR GLN GLU GLU GLN ASP PHE ILE PHE GLN SEQRES 5 A 134 ASN LEU GLN GLU GLU SER ALA TYR PHE VAL GLY LEU SER SEQRES 6 A 134 ASP PRO GLU GLY GLN ARG HIS TRP GLN TRP VAL ASP GLN SEQRES 7 A 134 THR PRO TYR ASN GLU SER SER THR PHE TRP HIS PRO ARG SEQRES 8 A 134 GLU PRO SER ASP PRO ASN GLU ARG CYS VAL VAL LEU ASN SEQRES 9 A 134 PHE ARG LYS SER PRO LYS ARG TRP GLY TRP ASN ASP VAL SEQRES 10 A 134 ASN CYS LEU GLY PRO GLN ARG SER VAL CYS GLU MET MET SEQRES 11 A 134 LYS ILE HIS LEU SEQRES 1 B 134 GLY SER CYS PRO LYS ASN TRP LYS SER PHE SER SER ASN SEQRES 2 B 134 CYS TYR PHE ILE SER THR GLU SER ALA SER TRP GLN ASP SEQRES 3 B 134 SER GLU LYS ASP CYS ALA ARG MET GLU ALA HIS LEU LEU SEQRES 4 B 134 VAL ILE ASN THR GLN GLU GLU GLN ASP PHE ILE PHE GLN SEQRES 5 B 134 ASN LEU GLN GLU GLU SER ALA TYR PHE VAL GLY LEU SER SEQRES 6 B 134 ASP PRO GLU GLY GLN ARG HIS TRP GLN TRP VAL ASP GLN SEQRES 7 B 134 THR PRO TYR ASN GLU SER SER THR PHE TRP HIS PRO ARG SEQRES 8 B 134 GLU PRO SER ASP PRO ASN GLU ARG CYS VAL VAL LEU ASN SEQRES 9 B 134 PHE ARG LYS SER PRO LYS ARG TRP GLY TRP ASN ASP VAL SEQRES 10 B 134 ASN CYS LEU GLY PRO GLN ARG SER VAL CYS GLU MET MET SEQRES 11 B 134 LYS ILE HIS LEU SEQRES 1 C 134 GLY SER CYS PRO LYS ASN TRP LYS SER PHE SER SER ASN SEQRES 2 C 134 CYS TYR PHE ILE SER THR GLU SER ALA SER TRP GLN ASP SEQRES 3 C 134 SER GLU LYS ASP CYS ALA ARG MET GLU ALA HIS LEU LEU SEQRES 4 C 134 VAL ILE ASN THR GLN GLU GLU GLN ASP PHE ILE PHE GLN SEQRES 5 C 134 ASN LEU GLN GLU GLU SER ALA TYR PHE VAL GLY LEU SER SEQRES 6 C 134 ASP PRO GLU GLY GLN ARG HIS TRP GLN TRP VAL ASP GLN SEQRES 7 C 134 THR PRO TYR ASN GLU SER SER THR PHE TRP HIS PRO ARG SEQRES 8 C 134 GLU PRO SER ASP PRO ASN GLU ARG CYS VAL VAL LEU ASN SEQRES 9 C 134 PHE ARG LYS SER PRO LYS ARG TRP GLY TRP ASN ASP VAL SEQRES 10 C 134 ASN CYS LEU GLY PRO GLN ARG SER VAL CYS GLU MET MET SEQRES 11 C 134 LYS ILE HIS LEU SEQRES 1 D 134 GLY SER CYS PRO LYS ASN TRP LYS SER PHE SER SER ASN SEQRES 2 D 134 CYS TYR PHE ILE SER THR GLU SER ALA SER TRP GLN ASP SEQRES 3 D 134 SER GLU LYS ASP CYS ALA ARG MET GLU ALA HIS LEU LEU SEQRES 4 D 134 VAL ILE ASN THR GLN GLU GLU GLN ASP PHE ILE PHE GLN SEQRES 5 D 134 ASN LEU GLN GLU GLU SER ALA TYR PHE VAL GLY LEU SER SEQRES 6 D 134 ASP PRO GLU GLY GLN ARG HIS TRP GLN TRP VAL ASP GLN SEQRES 7 D 134 THR PRO TYR ASN GLU SER SER THR PHE TRP HIS PRO ARG SEQRES 8 D 134 GLU PRO SER ASP PRO ASN GLU ARG CYS VAL VAL LEU ASN SEQRES 9 D 134 PHE ARG LYS SER PRO LYS ARG TRP GLY TRP ASN ASP VAL SEQRES 10 D 134 ASN CYS LEU GLY PRO GLN ARG SER VAL CYS GLU MET MET SEQRES 11 D 134 LYS ILE HIS LEU HET CA A2001 1 HET CA A2002 1 HET CA B2001 1 HET CA B2002 1 HET CA C2001 1 HET CA C2002 1 HET CA D2001 1 HET CA D2002 1 HETNAM CA CALCIUM ION FORMUL 5 CA 8(CA 2+) FORMUL 13 HOH *7(H2 O) HELIX 1 AA1 SER A 126 MET A 137 1 12 HELIX 2 AA2 THR A 146 GLN A 155 1 10 HELIX 3 AA3 ASN A 185 THR A 189 5 5 HELIX 4 AA4 SER B 126 MET B 137 1 12 HELIX 5 AA5 THR B 146 GLN B 155 1 10 HELIX 6 AA6 ASN B 185 THR B 189 5 5 HELIX 7 AA7 SER C 126 MET C 137 1 12 HELIX 8 AA8 THR C 146 PHE C 154 1 9 HELIX 9 AA9 SER D 126 MET D 137 1 12 HELIX 10 AB1 THR D 146 GLN D 155 1 10 SHEET 1 AA1 5 LYS A 111 PHE A 113 0 SHEET 2 AA1 5 ASN A 116 ILE A 120 -1 O TYR A 118 N LYS A 111 SHEET 3 AA1 5 ARG A 227 MET A 233 -1 O MET A 232 N CYS A 117 SHEET 4 AA1 5 TYR A 163 SER A 168 1 N PHE A 164 O ARG A 227 SHEET 5 AA1 5 GLN A 177 TRP A 178 -1 O GLN A 177 N SER A 168 SHEET 1 AA2 5 HIS A 140 LEU A 141 0 SHEET 2 AA2 5 ARG A 227 MET A 233 -1 O GLU A 231 N HIS A 140 SHEET 3 AA2 5 TYR A 163 SER A 168 1 N PHE A 164 O ARG A 227 SHEET 4 AA2 5 CYS A 203 ARG A 209 -1 O LEU A 206 N TYR A 163 SHEET 5 AA2 5 ARG A 214 VAL A 220 -1 O VAL A 220 N CYS A 203 SHEET 1 AA3 5 LYS B 111 PHE B 113 0 SHEET 2 AA3 5 ASN B 116 ILE B 120 -1 O TYR B 118 N LYS B 111 SHEET 3 AA3 5 ARG B 227 MET B 233 -1 O MET B 232 N CYS B 117 SHEET 4 AA3 5 TYR B 163 SER B 168 1 N PHE B 164 O ARG B 227 SHEET 5 AA3 5 GLN B 177 TRP B 178 -1 O GLN B 177 N SER B 168 SHEET 1 AA4 5 HIS B 140 LEU B 141 0 SHEET 2 AA4 5 ARG B 227 MET B 233 -1 O GLU B 231 N HIS B 140 SHEET 3 AA4 5 TYR B 163 SER B 168 1 N PHE B 164 O ARG B 227 SHEET 4 AA4 5 CYS B 203 ARG B 209 -1 O LEU B 206 N TYR B 163 SHEET 5 AA4 5 ARG B 214 VAL B 220 -1 O VAL B 220 N CYS B 203 SHEET 1 AA5 5 LYS C 111 PHE C 113 0 SHEET 2 AA5 5 ASN C 116 ILE C 120 -1 O TYR C 118 N LYS C 111 SHEET 3 AA5 5 ARG C 227 MET C 232 -1 O CYS C 230 N PHE C 119 SHEET 4 AA5 5 TYR C 163 SER C 168 1 N PHE C 164 O ARG C 227 SHEET 5 AA5 5 GLN C 177 TRP C 178 -1 O GLN C 177 N SER C 168 SHEET 1 AA6 5 HIS C 140 LEU C 141 0 SHEET 2 AA6 5 ARG C 227 MET C 232 -1 O GLU C 231 N HIS C 140 SHEET 3 AA6 5 TYR C 163 SER C 168 1 N PHE C 164 O ARG C 227 SHEET 4 AA6 5 CYS C 203 ARG C 209 -1 O LEU C 206 N TYR C 163 SHEET 5 AA6 5 ARG C 214 VAL C 220 -1 O VAL C 220 N CYS C 203 SHEET 1 AA7 5 LYS D 111 PHE D 113 0 SHEET 2 AA7 5 ASN D 116 ILE D 120 -1 O TYR D 118 N LYS D 111 SHEET 3 AA7 5 ARG D 227 MET D 232 -1 O CYS D 230 N PHE D 119 SHEET 4 AA7 5 TYR D 163 SER D 168 1 N PHE D 164 O ARG D 227 SHEET 5 AA7 5 GLN D 177 TRP D 178 -1 O GLN D 177 N SER D 168 SHEET 1 AA8 5 HIS D 140 LEU D 141 0 SHEET 2 AA8 5 ARG D 227 MET D 232 -1 O GLU D 231 N HIS D 140 SHEET 3 AA8 5 TYR D 163 SER D 168 1 N PHE D 164 O ARG D 227 SHEET 4 AA8 5 CYS D 203 ARG D 209 -1 O LEU D 206 N TYR D 163 SHEET 5 AA8 5 ARG D 214 VAL D 220 -1 O ASN D 218 N VAL D 205 SSBOND 1 CYS A 106 CYS A 117 1555 1555 2.04 SSBOND 2 CYS A 134 CYS A 230 1555 1555 2.04 SSBOND 3 CYS A 203 CYS A 222 1555 1555 2.03 SSBOND 4 CYS B 106 CYS B 117 1555 1555 2.04 SSBOND 5 CYS B 134 CYS B 230 1555 1555 2.04 SSBOND 6 CYS B 203 CYS B 222 1555 1555 2.03 SSBOND 7 CYS C 106 CYS C 117 1555 1555 2.04 SSBOND 8 CYS C 134 CYS C 230 1555 1555 2.04 SSBOND 9 CYS C 203 CYS C 222 1555 1555 2.03 SSBOND 10 CYS D 106 CYS D 117 1555 1555 2.04 SSBOND 11 CYS D 134 CYS D 230 1555 1555 2.03 SSBOND 12 CYS D 203 CYS D 222 1555 1555 2.03 LINK O VAL A 143 CA CA A2001 1555 1555 2.33 LINK OD1 ASN A 145 CA CA A2001 1555 1555 2.41 LINK OE1 GLU A 149 CA CA A2001 1555 1555 2.55 LINK OE2 GLU A 149 CA CA A2001 1555 1555 2.37 LINK OE1 GLU A 195 CA CA A2002 1555 1555 2.42 LINK OE2 GLU A 195 CA CA A2002 1555 1555 2.47 LINK OG SER A 197 CA CA A2002 1555 1555 2.44 LINK OE2 GLU A 201 CA CA A2002 1555 1555 2.39 LINK OD1 ASN A 218 CA CA A2002 1555 1555 2.40 LINK O ASP A 219 CA CA A2002 1555 1555 2.52 LINK OD1 ASP A 219 CA CA A2002 1555 1555 2.42 LINK OE1 GLU A 231 CA CA A2001 1555 1555 2.50 LINK OE2 GLU A 231 CA CA A2001 1555 1555 2.37 LINK CA CA A2002 O HOH A2101 1555 1555 2.41 LINK O VAL B 143 CA CA B2001 1555 1555 2.39 LINK OD1 ASN B 145 CA CA B2001 1555 1555 2.39 LINK OE1 GLU B 149 CA CA B2001 1555 1555 2.58 LINK OE2 GLU B 149 CA CA B2001 1555 1555 2.34 LINK OE1 GLU B 195 CA CA B2002 1555 1555 2.47 LINK OE2 GLU B 195 CA CA B2002 1555 1555 2.50 LINK OG SER B 197 CA CA B2002 1555 1555 2.43 LINK OE2 GLU B 201 CA CA B2002 1555 1555 2.52 LINK OD1 ASN B 218 CA CA B2002 1555 1555 2.55 LINK O ASP B 219 CA CA B2002 1555 1555 2.51 LINK OD1 ASP B 219 CA CA B2002 1555 1555 2.34 LINK OE1 GLU B 231 CA CA B2001 1555 1555 2.49 LINK OE2 GLU B 231 CA CA B2001 1555 1555 2.35 LINK CA CA B2002 O HOH B2101 1555 1555 2.45 LINK O VAL C 143 CA CA C2001 1555 1555 2.28 LINK OD1 ASN C 145 CA CA C2001 1555 1555 2.24 LINK OE1 GLU C 149 CA CA C2001 1555 1555 2.53 LINK OE2 GLU C 149 CA CA C2001 1555 1555 2.38 LINK OE1 GLU C 195 CA CA C2002 1555 1555 2.42 LINK OE2 GLU C 195 CA CA C2002 1555 1555 2.43 LINK OG SER C 197 CA CA C2002 1555 1555 2.45 LINK OE2 GLU C 201 CA CA C2002 1555 1555 2.41 LINK OD1 ASN C 218 CA CA C2002 1555 1555 2.41 LINK O ASP C 219 CA CA C2002 1555 1555 2.47 LINK OD1 ASP C 219 CA CA C2002 1555 1555 2.34 LINK OE1 GLU C 231 CA CA C2001 1555 1555 2.41 LINK OE2 GLU C 231 CA CA C2001 1555 1555 2.29 LINK CA CA C2002 O HOH C2101 1555 1555 2.40 LINK O VAL D 143 CA CA D2001 1555 1555 2.45 LINK OD1 ASN D 145 CA CA D2001 1555 1555 2.37 LINK OE1 GLU D 149 CA CA D2001 1555 1555 2.55 LINK OE2 GLU D 149 CA CA D2001 1555 1555 2.37 LINK OE1 GLU D 195 CA CA D2002 1555 1555 2.44 LINK OE2 GLU D 195 CA CA D2002 1555 1555 2.42 LINK OG SER D 197 CA CA D2002 1555 1555 2.45 LINK OE1 GLU D 201 CA CA D2002 1555 1555 2.53 LINK OE2 GLU D 201 CA CA D2002 1555 1555 2.42 LINK OD1 ASN D 218 CA CA D2002 1555 1555 2.49 LINK O ASP D 219 CA CA D2002 1555 1555 2.37 LINK OD1 ASP D 219 CA CA D2002 1555 1555 2.40 LINK OE1 GLU D 231 CA CA D2001 1555 1555 2.48 LINK OE2 GLU D 231 CA CA D2001 1555 1555 2.31 LINK CA CA D2002 O HOH D2101 1555 1555 2.37 CISPEP 1 GLU A 195 PRO A 196 0 0.93 CISPEP 2 SER A 211 PRO A 212 0 -3.33 CISPEP 3 GLU B 195 PRO B 196 0 5.09 CISPEP 4 SER B 211 PRO B 212 0 -1.93 CISPEP 5 GLU C 195 PRO C 196 0 1.23 CISPEP 6 SER C 211 PRO C 212 0 -3.94 CISPEP 7 GLU D 195 PRO D 196 0 0.09 CISPEP 8 SER D 211 PRO D 212 0 0.42 SITE 1 AC1 4 VAL A 143 ASN A 145 GLU A 149 GLU A 231 SITE 1 AC2 6 GLU A 195 SER A 197 GLU A 201 ASN A 218 SITE 2 AC2 6 ASP A 219 HOH A2101 SITE 1 AC3 4 VAL B 143 ASN B 145 GLU B 149 GLU B 231 SITE 1 AC4 6 GLU B 195 SER B 197 GLU B 201 ASN B 218 SITE 2 AC4 6 ASP B 219 HOH B2101 SITE 1 AC5 4 VAL C 143 ASN C 145 GLU C 149 GLU C 231 SITE 1 AC6 6 GLU C 195 SER C 197 GLU C 201 ASN C 218 SITE 2 AC6 6 ASP C 219 HOH C2101 SITE 1 AC7 4 VAL D 143 ASN D 145 GLU D 149 GLU D 231 SITE 1 AC8 6 GLU D 195 SER D 197 GLU D 201 ASN D 218 SITE 2 AC8 6 ASP D 219 HOH D2101 CRYST1 102.489 105.832 65.387 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009757 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015294 0.00000