HEADER HYDROLASE 28-DEC-15 5B23 TITLE X-RAY STRUCTURE OF CLOSTRIDIUM PERFRINGENS SORTASE B COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN SORTASE B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 24-249; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS (STRAIN 13 / TYPE A); SOURCE 3 ORGANISM_TAXID: 195102; SOURCE 4 STRAIN: 13 / TYPE A; SOURCE 5 GENE: CPE0513; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSPEPTIDASE, SORTASE, CLOSTRIDIUM PERFRINGENS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KAMITORI,H.YOSHIDA,E.TAMAI REVDAT 4 08-NOV-23 5B23 1 REMARK REVDAT 3 25-OCT-17 5B23 1 JRNL REVDAT 2 18-OCT-17 5B23 1 JRNL REMARK REVDAT 1 28-DEC-16 5B23 0 JRNL AUTH E.TAMAI,H.SEKIYA,J.MAKI,H.NARIYA,H.YOSHIDA,S.KAMITORI JRNL TITL X-RAY STRUCTURE OF CLOSTRIDIUM PERFRINGENS SORTASE B JRNL TITL 2 CYSTEINE TRANSPEPTIDASE JRNL REF BIOCHEM. BIOPHYS. RES. V. 493 1264 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28962862 JRNL DOI 10.1016/J.BBRC.2017.09.144 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3110 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2880 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4180 ; 1.115 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6632 ; 0.585 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 9.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;38.399 ;25.495 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;19.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3586 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 778 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5B23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1300000386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4UX7 REMARK 200 REMARK 200 REMARK: PRISMATIC SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE, 205 W/V REMARK 280 POLYETHYLENE GLYCOL 3350, PH 6.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 24 REMARK 465 LYS A 25 REMARK 465 ILE A 26 REMARK 465 TYR A 27 REMARK 465 GLN A 28 REMARK 465 LYS A 29 REMARK 465 ARG A 30 REMARK 465 LEU A 31 REMARK 465 GLU A 32 REMARK 465 TYR A 33 REMARK 465 TYR A 34 REMARK 465 THR A 35 REMARK 465 ASP A 36 REMARK 465 SER A 37 REMARK 465 ARG A 38 REMARK 465 ASP A 39 REMARK 465 TYR A 40 REMARK 465 ASP A 41 REMARK 465 ASN A 42 REMARK 465 LEU A 43 REMARK 465 ARG A 44 REMARK 465 SER A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 PRO A 48 REMARK 465 LEU A 49 REMARK 465 SER A 50 REMARK 465 ASP A 51 REMARK 465 SER A 52 REMARK 465 SER A 53 REMARK 465 VAL A 54 REMARK 465 ASN A 55 REMARK 465 LYS A 56 REMARK 465 SER A 57 REMARK 465 PRO A 58 REMARK 465 GLU A 59 REMARK 465 GLU A 60 REMARK 465 HIS A 61 REMARK 465 LYS A 62 REMARK 465 GLN A 63 REMARK 465 ASP A 64 REMARK 465 ALA A 65 REMARK 465 GLU A 66 REMARK 465 LEU A 250 REMARK 465 GLU A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 MET B 24 REMARK 465 LYS B 25 REMARK 465 ILE B 26 REMARK 465 TYR B 27 REMARK 465 GLN B 28 REMARK 465 LYS B 29 REMARK 465 ARG B 30 REMARK 465 LEU B 31 REMARK 465 GLU B 32 REMARK 465 TYR B 33 REMARK 465 TYR B 34 REMARK 465 THR B 35 REMARK 465 ASP B 36 REMARK 465 SER B 37 REMARK 465 ARG B 38 REMARK 465 ASP B 39 REMARK 465 TYR B 40 REMARK 465 ASP B 41 REMARK 465 ASN B 42 REMARK 465 LEU B 43 REMARK 465 ARG B 44 REMARK 465 SER B 45 REMARK 465 LEU B 46 REMARK 465 SER B 47 REMARK 465 PRO B 48 REMARK 465 LEU B 49 REMARK 465 SER B 50 REMARK 465 ASP B 51 REMARK 465 SER B 52 REMARK 465 SER B 53 REMARK 465 VAL B 54 REMARK 465 ASN B 55 REMARK 465 LYS B 56 REMARK 465 SER B 57 REMARK 465 PRO B 58 REMARK 465 GLU B 59 REMARK 465 GLU B 60 REMARK 465 HIS B 61 REMARK 465 LYS B 62 REMARK 465 GLN B 63 REMARK 465 ASP B 64 REMARK 465 ALA B 65 REMARK 465 GLU B 66 REMARK 465 LEU B 250 REMARK 465 GLU B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 79 -43.57 -131.78 REMARK 500 ASP A 90 79.38 -167.71 REMARK 500 ASN A 106 -169.06 -77.76 REMARK 500 LYS A 109 -23.69 75.34 REMARK 500 GLU A 110 133.90 -35.46 REMARK 500 SER A 112 145.62 178.76 REMARK 500 MET A 143 -126.32 56.24 REMARK 500 GLU A 167 66.73 29.45 REMARK 500 ASN B 75 109.27 -172.02 REMARK 500 GLU B 85 119.05 -13.94 REMARK 500 ASP B 90 75.59 -162.89 REMARK 500 LYS B 109 5.72 86.91 REMARK 500 SER B 112 123.08 -173.94 REMARK 500 MET B 143 -121.82 57.21 REMARK 500 SER B 195 -105.16 99.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 139 ASN B 140 -144.90 REMARK 500 PHE B 194 SER B 195 45.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 5B23 A 24 249 UNP Q8XN25 Q8XN25_CLOPE 24 249 DBREF 5B23 B 24 249 UNP Q8XN25 Q8XN25_CLOPE 24 249 SEQADV 5B23 LEU A 250 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 GLU A 251 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS A 252 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS A 253 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS A 254 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS A 255 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS A 256 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS A 257 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 LEU B 250 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 GLU B 251 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS B 252 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS B 253 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS B 254 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS B 255 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS B 256 UNP Q8XN25 EXPRESSION TAG SEQADV 5B23 HIS B 257 UNP Q8XN25 EXPRESSION TAG SEQRES 1 A 234 MET LYS ILE TYR GLN LYS ARG LEU GLU TYR TYR THR ASP SEQRES 2 A 234 SER ARG ASP TYR ASP ASN LEU ARG SER LEU SER PRO LEU SEQRES 3 A 234 SER ASP SER SER VAL ASN LYS SER PRO GLU GLU HIS LYS SEQRES 4 A 234 GLN ASP ALA GLU SER GLU LYS ASN LEU LYS ASN ILE ASN SEQRES 5 A 234 PRO ASP TYR ARG PHE TRP ILE LYS VAL GLU GLY THR ASN SEQRES 6 A 234 ILE ASP PHE PRO VAL VAL GLN GLY LYS ASP ASN ASP PHE SEQRES 7 A 234 TYR LEU HIS HIS ASN PHE ASN LYS GLU LYS SER PHE SER SEQRES 8 A 234 GLY SER ILE PHE VAL ASP SER GLU ASN ASN LEU ASN ASP SEQRES 9 A 234 ASP SER ASN ILE VAL VAL TYR GLY HIS ASN MET ARG ASN SEQRES 10 A 234 ASP THR MET PHE ALA GLN ILE LYS HIS PHE LYS ASN GLU SEQRES 11 A 234 ASN PHE PHE ASN ALA ASN LYS TYR VAL THR LEU TYR ARG SEQRES 12 A 234 GLU GLY LYS LYS SER THR PHE GLU ILE PHE SER VAL TYR SEQRES 13 A 234 GLN GLU ASN ALA LYS ASP LEU GLU SER GLU ILE LYS THR SEQRES 14 A 234 LYS PHE SER ASN LYS GLU ASP TYR GLU LYS TYR LEU LYS SEQRES 15 A 234 GLU GLN GLU SER LYS SER LEU PHE LYS ARG ASP GLY ILE SEQRES 16 A 234 ASP LEU ASN SER ASN ASP ARG ILE LEU THR LEU ILE THR SEQRES 17 A 234 CYS GLY TYR ASP PHE VAL ASN ALA ARG ILE VAL VAL VAL SEQRES 18 A 234 ALA LYS GLU ILE ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 234 MET LYS ILE TYR GLN LYS ARG LEU GLU TYR TYR THR ASP SEQRES 2 B 234 SER ARG ASP TYR ASP ASN LEU ARG SER LEU SER PRO LEU SEQRES 3 B 234 SER ASP SER SER VAL ASN LYS SER PRO GLU GLU HIS LYS SEQRES 4 B 234 GLN ASP ALA GLU SER GLU LYS ASN LEU LYS ASN ILE ASN SEQRES 5 B 234 PRO ASP TYR ARG PHE TRP ILE LYS VAL GLU GLY THR ASN SEQRES 6 B 234 ILE ASP PHE PRO VAL VAL GLN GLY LYS ASP ASN ASP PHE SEQRES 7 B 234 TYR LEU HIS HIS ASN PHE ASN LYS GLU LYS SER PHE SER SEQRES 8 B 234 GLY SER ILE PHE VAL ASP SER GLU ASN ASN LEU ASN ASP SEQRES 9 B 234 ASP SER ASN ILE VAL VAL TYR GLY HIS ASN MET ARG ASN SEQRES 10 B 234 ASP THR MET PHE ALA GLN ILE LYS HIS PHE LYS ASN GLU SEQRES 11 B 234 ASN PHE PHE ASN ALA ASN LYS TYR VAL THR LEU TYR ARG SEQRES 12 B 234 GLU GLY LYS LYS SER THR PHE GLU ILE PHE SER VAL TYR SEQRES 13 B 234 GLN GLU ASN ALA LYS ASP LEU GLU SER GLU ILE LYS THR SEQRES 14 B 234 LYS PHE SER ASN LYS GLU ASP TYR GLU LYS TYR LEU LYS SEQRES 15 B 234 GLU GLN GLU SER LYS SER LEU PHE LYS ARG ASP GLY ILE SEQRES 16 B 234 ASP LEU ASN SER ASN ASP ARG ILE LEU THR LEU ILE THR SEQRES 17 B 234 CYS GLY TYR ASP PHE VAL ASN ALA ARG ILE VAL VAL VAL SEQRES 18 B 234 ALA LYS GLU ILE ASP LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *107(H2 O) HELIX 1 AA1 SER A 67 ASN A 75 1 9 HELIX 2 AA2 ASP A 100 HIS A 104 5 5 HELIX 3 AA3 PHE A 144 LYS A 151 5 8 HELIX 4 AA4 ASN A 152 ASN A 159 1 8 HELIX 5 AA5 ALA A 183 ILE A 190 1 8 HELIX 6 AA6 ASN A 196 LYS A 210 1 15 HELIX 7 AA7 GLU B 68 ASN B 75 1 8 HELIX 8 AA8 ASP B 100 HIS B 104 5 5 HELIX 9 AA9 PHE B 144 LYS B 151 5 8 HELIX 10 AB1 ASN B 152 ASN B 159 1 8 HELIX 11 AB2 ALA B 183 SER B 188 1 6 HELIX 12 AB3 ASN B 196 LYS B 210 1 15 SHEET 1 AA1 9 TYR A 78 VAL A 84 0 SHEET 2 AA1 9 ASP A 90 GLN A 95 -1 O PHE A 91 N ILE A 82 SHEET 3 AA1 9 PHE A 118 VAL A 119 1 O VAL A 119 N VAL A 94 SHEET 4 AA1 9 ASN A 130 GLY A 135 -1 O TYR A 134 N PHE A 118 SHEET 5 AA1 9 ILE A 226 CYS A 232 1 O THR A 228 N VAL A 133 SHEET 6 AA1 9 ALA A 239 GLU A 247 -1 O VAL A 243 N LEU A 229 SHEET 7 AA1 9 LYS A 169 ASN A 182 -1 N GLU A 174 O LYS A 246 SHEET 8 AA1 9 TYR A 161 ARG A 166 -1 N LEU A 164 O SER A 171 SHEET 9 AA1 9 TYR A 78 VAL A 84 -1 N LYS A 83 O THR A 163 SHEET 1 AA2 9 TYR B 78 LYS B 83 0 SHEET 2 AA2 9 ASP B 90 GLN B 95 -1 O PHE B 91 N ILE B 82 SHEET 3 AA2 9 PHE B 118 VAL B 119 1 O VAL B 119 N VAL B 94 SHEET 4 AA2 9 ASN B 130 TYR B 134 -1 O TYR B 134 N PHE B 118 SHEET 5 AA2 9 ILE B 226 GLY B 233 1 O THR B 228 N VAL B 133 SHEET 6 AA2 9 ALA B 239 ILE B 248 -1 O VAL B 243 N LEU B 229 SHEET 7 AA2 9 LYS B 169 ASN B 182 -1 N TYR B 179 O VAL B 242 SHEET 8 AA2 9 TYR B 161 ARG B 166 -1 N LEU B 164 O SER B 171 SHEET 9 AA2 9 TYR B 78 LYS B 83 -1 N LYS B 83 O THR B 163 CRYST1 83.200 96.400 58.640 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017053 0.00000