HEADER VIRAL PROTEIN 14-JAN-16 5B2D TITLE CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE BOUND TO TITLE 2 3-SIALYLLACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 106-582; COMPND 5 SYNONYM: HEMAGGLUTININ-NEURAMINIDASE; COMPND 6 EC: 3.2.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUMPS VIRUS; SOURCE 3 ORGANISM_TAXID: 11161; SOURCE 4 STRAIN: HOSHINO; SOURCE 5 GENE: HN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 293SGNTI- KEYWDS GLYCOPROTEIN, VIRAL PROTEIN, BETA-PROPELLER, RECEPTOR BINDING, SUGAR EXPDTA X-RAY DIFFRACTION AUTHOR M.KUBOTA,K.TAKEUCHI,S.WATANABE,S.OHNO,R.MATSUOKA,D.KOHDA,H.HIRAMATSU, AUTHOR 2 Y.SUZUKI,T.NAKAYAMA,T.TERADA,K.SHIMIZU,N.SHIMIZU,Y.YANAGI, AUTHOR 3 T.HASHIGUCHI REVDAT 6 20-NOV-24 5B2D 1 REMARK REVDAT 5 08-NOV-23 5B2D 1 REMARK HETSYN REVDAT 4 29-JUL-20 5B2D 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 26-FEB-20 5B2D 1 JRNL REMARK REVDAT 2 26-OCT-16 5B2D 1 JRNL REVDAT 1 28-SEP-16 5B2D 0 JRNL AUTH M.KUBOTA,K.TAKEUCHI,S.WATANABE,S.OHNO,R.MATSUOKA,D.KOHDA, JRNL AUTH 2 S.I.NAKAKITA,H.HIRAMATSU,Y.SUZUKI,T.NAKAYAMA,T.TERADA, JRNL AUTH 3 K.SHIMIZU,N.SHIMIZU,M.SHIROISHI,Y.YANAGI,T.HASHIGUCHI JRNL TITL TRISACCHARIDE CONTAINING ALPHA 2,3-LINKED SIALIC ACID IS A JRNL TITL 2 RECEPTOR FOR MUMPS VIRUS JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 11579 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27671656 JRNL DOI 10.1073/PNAS.1608383113 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 118.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 98172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.2290 - 5.9074 0.95 4728 246 0.1791 0.1804 REMARK 3 2 5.9074 - 4.6896 0.95 4707 233 0.1460 0.1716 REMARK 3 3 4.6896 - 4.0971 0.95 4674 256 0.1385 0.1560 REMARK 3 4 4.0971 - 3.7225 0.95 4668 258 0.1542 0.1677 REMARK 3 5 3.7225 - 3.4558 0.95 4679 233 0.1591 0.1773 REMARK 3 6 3.4558 - 3.2520 0.94 4607 279 0.1666 0.1864 REMARK 3 7 3.2520 - 3.0892 0.95 4682 244 0.1812 0.1934 REMARK 3 8 3.0892 - 2.9547 0.95 4691 235 0.1777 0.1845 REMARK 3 9 2.9547 - 2.8410 0.95 4627 253 0.1832 0.1957 REMARK 3 10 2.8410 - 2.7429 0.95 4651 243 0.1871 0.2103 REMARK 3 11 2.7429 - 2.6572 0.95 4673 257 0.1954 0.1987 REMARK 3 12 2.6572 - 2.5812 0.96 4663 215 0.2007 0.2060 REMARK 3 13 2.5812 - 2.5133 0.95 4634 267 0.2098 0.2085 REMARK 3 14 2.5133 - 2.4520 0.95 4655 240 0.2068 0.2327 REMARK 3 15 2.4520 - 2.3962 0.95 4673 244 0.2210 0.2412 REMARK 3 16 2.3962 - 2.3452 0.95 4651 227 0.2280 0.2352 REMARK 3 17 2.3452 - 2.2983 0.95 4686 237 0.2285 0.2127 REMARK 3 18 2.2983 - 2.2549 0.95 4643 236 0.2404 0.2914 REMARK 3 19 2.2549 - 2.2147 0.95 4629 252 0.2386 0.2539 REMARK 3 20 2.2147 - 2.1771 0.95 4641 250 0.2448 0.2763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7490 REMARK 3 ANGLE : 1.109 10250 REMARK 3 CHIRALITY : 0.190 1190 REMARK 3 PLANARITY : 0.005 1296 REMARK 3 DIHEDRAL : 13.495 2568 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1300000400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.177 REMARK 200 RESOLUTION RANGE LOW (A) : 177.274 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.08300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1E8V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, AMMONIUM SULFATE, REMARK 280 GLYCEROL, 3-SIALYLLACTOSE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.09133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.18267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.63700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 147.72833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.54567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 103 REMARK 465 THR A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 ASN A 107 REMARK 465 GLN A 108 REMARK 465 ASN A 109 REMARK 465 GLN A 110 REMARK 465 LEU A 111 REMARK 465 LEU A 112 REMARK 465 SER A 113 REMARK 465 THR A 114 REMARK 465 LEU A 115 REMARK 465 ALA A 116 REMARK 465 THR A 117 REMARK 465 ILE A 118 REMARK 465 ARG A 119 REMARK 465 THR A 120 REMARK 465 GLY A 121 REMARK 465 LYS A 122 REMARK 465 LYS A 123 REMARK 465 GLN A 124 REMARK 465 VAL A 125 REMARK 465 SER A 126 REMARK 465 ASN A 127 REMARK 465 CYS A 128 REMARK 465 SER A 129 REMARK 465 THR A 130 REMARK 465 ASN A 131 REMARK 465 ILE A 132 REMARK 465 GLY A 583 REMARK 465 THR A 584 REMARK 465 LYS A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 465 HIS A 588 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 GLU B 103 REMARK 465 THR B 104 REMARK 465 GLY B 105 REMARK 465 GLY B 106 REMARK 465 ASN B 107 REMARK 465 GLN B 108 REMARK 465 ASN B 109 REMARK 465 GLN B 110 REMARK 465 LEU B 111 REMARK 465 LEU B 112 REMARK 465 SER B 113 REMARK 465 THR B 114 REMARK 465 LEU B 115 REMARK 465 ALA B 116 REMARK 465 THR B 117 REMARK 465 ILE B 118 REMARK 465 ARG B 119 REMARK 465 THR B 120 REMARK 465 GLY B 121 REMARK 465 LYS B 122 REMARK 465 LYS B 123 REMARK 465 GLN B 124 REMARK 465 VAL B 125 REMARK 465 SER B 126 REMARK 465 ASN B 127 REMARK 465 CYS B 128 REMARK 465 SER B 129 REMARK 465 THR B 130 REMARK 465 ASN B 131 REMARK 465 ILE B 132 REMARK 465 GLY B 583 REMARK 465 THR B 584 REMARK 465 LYS B 585 REMARK 465 HIS B 586 REMARK 465 HIS B 587 REMARK 465 HIS B 588 REMARK 465 HIS B 589 REMARK 465 HIS B 590 REMARK 465 HIS B 591 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 134 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 181 66.32 63.28 REMARK 500 HIS A 205 -87.11 -114.66 REMARK 500 THR A 206 -128.06 56.99 REMARK 500 VAL A 308 -37.38 69.71 REMARK 500 ASN A 348 71.21 -150.60 REMARK 500 CYS A 392 -177.12 78.26 REMARK 500 ASN A 414 -129.68 52.97 REMARK 500 PRO A 453 79.44 -69.25 REMARK 500 SER A 456 -81.55 -127.84 REMARK 500 SER A 477 -156.63 -156.71 REMARK 500 TYR A 489 -74.48 -96.49 REMARK 500 SER A 508 152.58 179.92 REMARK 500 SER A 539 -112.26 -127.40 REMARK 500 GLU A 569 112.58 -33.20 REMARK 500 PHE A 570 89.74 75.34 REMARK 500 ILE B 181 66.83 62.64 REMARK 500 THR B 206 -59.33 -121.18 REMARK 500 VAL B 308 -49.71 80.75 REMARK 500 ASN B 316 19.28 58.37 REMARK 500 ASN B 348 68.62 -151.64 REMARK 500 CYS B 392 176.62 80.10 REMARK 500 ASN B 414 -127.79 51.90 REMARK 500 PRO B 453 83.08 -67.44 REMARK 500 SER B 456 -81.30 -129.82 REMARK 500 SER B 477 -156.08 -156.26 REMARK 500 TYR B 489 -75.46 -93.98 REMARK 500 SER B 508 152.85 178.80 REMARK 500 ASN B 514 69.15 60.12 REMARK 500 SER B 539 -110.16 -118.54 REMARK 500 GLU B 569 109.55 -34.52 REMARK 500 PHE B 570 75.39 94.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B2C RELATED DB: PDB DBREF 5B2D A 106 582 UNP Q9WAF5 Q9WAF5_9PARA 106 582 DBREF 5B2D B 106 582 UNP Q9WAF5 Q9WAF5_9PARA 106 582 SEQADV 5B2D GLU A 103 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D THR A 104 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D GLY A 105 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D GLY A 583 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D THR A 584 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D LYS A 585 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS A 586 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS A 587 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS A 588 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS A 589 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS A 590 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS A 591 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D GLU B 103 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D THR B 104 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D GLY B 105 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D GLY B 583 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D THR B 584 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D LYS B 585 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS B 586 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS B 587 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS B 588 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS B 589 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS B 590 UNP Q9WAF5 EXPRESSION TAG SEQADV 5B2D HIS B 591 UNP Q9WAF5 EXPRESSION TAG SEQRES 1 A 489 GLU THR GLY GLY ASN GLN ASN GLN LEU LEU SER THR LEU SEQRES 2 A 489 ALA THR ILE ARG THR GLY LYS LYS GLN VAL SER ASN CYS SEQRES 3 A 489 SER THR ASN ILE PRO LEU VAL ASN ASP LEU ARG PHE ILE SEQRES 4 A 489 ASN GLY ILE ASN LYS PHE ILE ILE GLU ASP TYR ALA THR SEQRES 5 A 489 HIS ASP PHE SER ILE GLY HIS PRO LEU ASN MET PRO SER SEQRES 6 A 489 PHE ILE PRO THR ALA THR SER PRO ASN GLY CYS THR ARG SEQRES 7 A 489 ILE PRO SER PHE SER LEU GLY LYS THR HIS TRP CYS TYR SEQRES 8 A 489 THR HIS ASN VAL ILE ASN ALA ASN CYS LYS ASP HIS THR SEQRES 9 A 489 SER SER ASN GLN TYR ILE SER MET GLY ILE LEU VAL GLN SEQRES 10 A 489 THR ALA SER GLY TYR PRO MET PHE LYS THR LEU LYS ILE SEQRES 11 A 489 GLN TYR LEU SER ASP GLY LEU ASN ARG LYS SER CYS SER SEQRES 12 A 489 ILE ALA THR VAL PRO ASP GLY CYS ALA MET TYR CYS TYR SEQRES 13 A 489 VAL SER THR GLN LEU GLU THR ASP ASP TYR ALA GLY SER SEQRES 14 A 489 SER PRO PRO THR GLN LYS LEU THR LEU LEU PHE TYR ASN SEQRES 15 A 489 ASP THR VAL THR GLU ARG THR ILE SER PRO THR GLY LEU SEQRES 16 A 489 GLU GLY ASN TRP ALA THR LEU VAL PRO GLY VAL GLY SER SEQRES 17 A 489 GLY ILE TYR PHE GLU ASN LYS LEU ILE PHE PRO ALA TYR SEQRES 18 A 489 GLY GLY VAL LEU PRO ASN SER THR LEU GLY VAL LYS SER SEQRES 19 A 489 ALA ARG GLU PHE PHE ARG PRO VAL ASN PRO TYR ASN PRO SEQRES 20 A 489 CYS SER GLY PRO GLN GLN ASP LEU ASP GLN ARG ALA LEU SEQRES 21 A 489 ARG SER TYR PHE PRO SER TYR PHE SER ASN ARG ARG VAL SEQRES 22 A 489 GLN SER ALA PHE LEU VAL CYS ALA TRP ASN GLN ILE LEU SEQRES 23 A 489 VAL THR ASN CYS GLU LEU VAL VAL PRO SER ASN ASN GLN SEQRES 24 A 489 THR LEU MET GLY ALA GLU GLY ARG VAL LEU LEU ILE ASN SEQRES 25 A 489 ASN ARG LEU LEU TYR TYR GLN ARG SER THR SER TRP TRP SEQRES 26 A 489 PRO TYR GLU LEU LEU TYR GLU ILE SER PHE THR PHE THR SEQRES 27 A 489 ASN SER GLY GLN SER SER VAL ASN MET SER TRP ILE PRO SEQRES 28 A 489 ILE TYR SER PHE THR ARG PRO GLY SER GLY ASN CYS SER SEQRES 29 A 489 GLY GLU ASN VAL CYS PRO THR ALA CYS VAL SER GLY VAL SEQRES 30 A 489 TYR LEU ASP PRO TRP PRO LEU THR PRO TYR SER HIS GLN SEQRES 31 A 489 SER GLY ILE ASN ARG ASN PHE TYR PHE THR GLY ALA LEU SEQRES 32 A 489 LEU ASN SER SER THR THR ARG VAL ASN PRO THR LEU TYR SEQRES 33 A 489 VAL SER ALA LEU ASN ASN LEU LYS VAL LEU ALA PRO TYR SEQRES 34 A 489 GLY ASN GLN GLY LEU PHE ALA SER TYR THR THR THR THR SEQRES 35 A 489 CYS PHE GLN ASP THR GLY ASP ALA SER VAL TYR CYS VAL SEQRES 36 A 489 TYR ILE MET GLU LEU ALA SER ASN ILE VAL GLY GLU PHE SEQRES 37 A 489 GLN ILE LEU PRO VAL LEU THR ARG LEU THR ILE THR GLY SEQRES 38 A 489 THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 489 GLU THR GLY GLY ASN GLN ASN GLN LEU LEU SER THR LEU SEQRES 2 B 489 ALA THR ILE ARG THR GLY LYS LYS GLN VAL SER ASN CYS SEQRES 3 B 489 SER THR ASN ILE PRO LEU VAL ASN ASP LEU ARG PHE ILE SEQRES 4 B 489 ASN GLY ILE ASN LYS PHE ILE ILE GLU ASP TYR ALA THR SEQRES 5 B 489 HIS ASP PHE SER ILE GLY HIS PRO LEU ASN MET PRO SER SEQRES 6 B 489 PHE ILE PRO THR ALA THR SER PRO ASN GLY CYS THR ARG SEQRES 7 B 489 ILE PRO SER PHE SER LEU GLY LYS THR HIS TRP CYS TYR SEQRES 8 B 489 THR HIS ASN VAL ILE ASN ALA ASN CYS LYS ASP HIS THR SEQRES 9 B 489 SER SER ASN GLN TYR ILE SER MET GLY ILE LEU VAL GLN SEQRES 10 B 489 THR ALA SER GLY TYR PRO MET PHE LYS THR LEU LYS ILE SEQRES 11 B 489 GLN TYR LEU SER ASP GLY LEU ASN ARG LYS SER CYS SER SEQRES 12 B 489 ILE ALA THR VAL PRO ASP GLY CYS ALA MET TYR CYS TYR SEQRES 13 B 489 VAL SER THR GLN LEU GLU THR ASP ASP TYR ALA GLY SER SEQRES 14 B 489 SER PRO PRO THR GLN LYS LEU THR LEU LEU PHE TYR ASN SEQRES 15 B 489 ASP THR VAL THR GLU ARG THR ILE SER PRO THR GLY LEU SEQRES 16 B 489 GLU GLY ASN TRP ALA THR LEU VAL PRO GLY VAL GLY SER SEQRES 17 B 489 GLY ILE TYR PHE GLU ASN LYS LEU ILE PHE PRO ALA TYR SEQRES 18 B 489 GLY GLY VAL LEU PRO ASN SER THR LEU GLY VAL LYS SER SEQRES 19 B 489 ALA ARG GLU PHE PHE ARG PRO VAL ASN PRO TYR ASN PRO SEQRES 20 B 489 CYS SER GLY PRO GLN GLN ASP LEU ASP GLN ARG ALA LEU SEQRES 21 B 489 ARG SER TYR PHE PRO SER TYR PHE SER ASN ARG ARG VAL SEQRES 22 B 489 GLN SER ALA PHE LEU VAL CYS ALA TRP ASN GLN ILE LEU SEQRES 23 B 489 VAL THR ASN CYS GLU LEU VAL VAL PRO SER ASN ASN GLN SEQRES 24 B 489 THR LEU MET GLY ALA GLU GLY ARG VAL LEU LEU ILE ASN SEQRES 25 B 489 ASN ARG LEU LEU TYR TYR GLN ARG SER THR SER TRP TRP SEQRES 26 B 489 PRO TYR GLU LEU LEU TYR GLU ILE SER PHE THR PHE THR SEQRES 27 B 489 ASN SER GLY GLN SER SER VAL ASN MET SER TRP ILE PRO SEQRES 28 B 489 ILE TYR SER PHE THR ARG PRO GLY SER GLY ASN CYS SER SEQRES 29 B 489 GLY GLU ASN VAL CYS PRO THR ALA CYS VAL SER GLY VAL SEQRES 30 B 489 TYR LEU ASP PRO TRP PRO LEU THR PRO TYR SER HIS GLN SEQRES 31 B 489 SER GLY ILE ASN ARG ASN PHE TYR PHE THR GLY ALA LEU SEQRES 32 B 489 LEU ASN SER SER THR THR ARG VAL ASN PRO THR LEU TYR SEQRES 33 B 489 VAL SER ALA LEU ASN ASN LEU LYS VAL LEU ALA PRO TYR SEQRES 34 B 489 GLY ASN GLN GLY LEU PHE ALA SER TYR THR THR THR THR SEQRES 35 B 489 CYS PHE GLN ASP THR GLY ASP ALA SER VAL TYR CYS VAL SEQRES 36 B 489 TYR ILE MET GLU LEU ALA SER ASN ILE VAL GLY GLU PHE SEQRES 37 B 489 GLN ILE LEU PRO VAL LEU THR ARG LEU THR ILE THR GLY SEQRES 38 B 489 THR LYS HIS HIS HIS HIS HIS HIS HET GLC C 1 12 HET GAL C 2 11 HET SIA C 3 20 HET GLC D 1 12 HET GAL D 2 11 HET SIA D 3 20 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 605 14 HET NAG B 601 14 HET NAG B 602 14 HET NAG B 603 14 HET NAG B 604 14 HET NAG B 605 14 HET SO4 B 607 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 SIA 2(C11 H19 N O9) FORMUL 5 NAG 10(C8 H15 N O6) FORMUL 15 SO4 O4 S 2- FORMUL 16 HOH *234(H2 O) HELIX 1 AA1 ASP A 137 ASN A 142 1 6 HELIX 2 AA2 LEU A 263 GLY A 270 1 8 HELIX 3 AA3 SER A 330 SER A 336 1 7 HELIX 4 AA4 PRO A 353 SER A 364 1 12 HELIX 5 AA5 TYR A 365 PHE A 366 5 2 HELIX 6 AA6 PRO A 367 SER A 371 5 5 HELIX 7 AA7 SER A 462 SER A 466 5 5 HELIX 8 AA8 ASP B 137 ASN B 142 1 6 HELIX 9 AA9 LEU B 263 GLY B 270 1 8 HELIX 10 AB1 SER B 330 SER B 336 1 7 HELIX 11 AB2 PRO B 353 SER B 364 1 12 HELIX 12 AB3 TYR B 365 PHE B 366 5 2 HELIX 13 AB4 PRO B 367 SER B 371 5 5 HELIX 14 AB5 SER B 462 SER B 466 5 5 SHEET 1 AA1 4 PHE A 157 ILE A 159 0 SHEET 2 AA1 4 GLN A 571 ILE A 581 -1 O THR A 580 N SER A 158 SHEET 3 AA1 4 VAL A 554 LEU A 562 -1 N VAL A 554 O LEU A 579 SHEET 4 AA1 4 ALA A 538 GLN A 547 -1 N PHE A 546 O TYR A 555 SHEET 1 AA2 4 CYS A 178 LEU A 186 0 SHEET 2 AA2 4 TRP A 191 ILE A 198 -1 O ILE A 198 N CYS A 178 SHEET 3 AA2 4 ASN A 209 GLN A 219 -1 O ASN A 209 N VAL A 197 SHEET 4 AA2 4 PRO A 225 LEU A 235 -1 O LEU A 230 N MET A 214 SHEET 1 AA3 4 ARG A 241 VAL A 249 0 SHEET 2 AA3 4 GLY A 252 VAL A 259 -1 O TYR A 256 N SER A 245 SHEET 3 AA3 4 THR A 275 PHE A 282 -1 O THR A 279 N MET A 255 SHEET 4 AA3 4 VAL A 287 ILE A 292 -1 O ARG A 290 N LEU A 278 SHEET 1 AA4 3 TRP A 301 PRO A 306 0 SHEET 2 AA4 3 LYS A 317 VAL A 326 -1 O TYR A 323 N VAL A 305 SHEET 3 AA4 3 ILE A 312 PHE A 314 -1 N ILE A 312 O ILE A 319 SHEET 1 AA5 4 TRP A 301 PRO A 306 0 SHEET 2 AA5 4 LYS A 317 VAL A 326 -1 O TYR A 323 N VAL A 305 SHEET 3 AA5 4 ARG A 374 ALA A 383 -1 O GLN A 376 N GLY A 324 SHEET 4 AA5 4 GLU A 393 VAL A 395 -1 O GLU A 393 N VAL A 381 SHEET 1 AA6 4 GLY A 408 ILE A 413 0 SHEET 2 AA6 4 ARG A 416 GLN A 421 -1 O LEU A 418 N LEU A 411 SHEET 3 AA6 4 LEU A 431 THR A 438 -1 O TYR A 433 N TYR A 419 SHEET 4 AA6 4 SER A 446 TRP A 451 -1 O ASN A 448 N SER A 436 SHEET 1 AA7 4 TRP A 484 PRO A 485 0 SHEET 2 AA7 4 PHE A 501 LEU A 506 -1 O THR A 502 N TRP A 484 SHEET 3 AA7 4 PRO A 515 SER A 520 -1 O SER A 520 N PHE A 501 SHEET 4 AA7 4 LEU A 525 PRO A 530 -1 O ALA A 529 N LEU A 517 SHEET 1 AA8 4 ASP B 156 ILE B 159 0 SHEET 2 AA8 4 GLN B 571 THR B 582 -1 O THR B 580 N SER B 158 SHEET 3 AA8 4 VAL B 554 LEU B 562 -1 N VAL B 554 O LEU B 579 SHEET 4 AA8 4 ALA B 538 GLN B 547 -1 N THR B 544 O VAL B 557 SHEET 1 AA9 4 CYS B 178 LEU B 186 0 SHEET 2 AA9 4 TRP B 191 ILE B 198 -1 O ASN B 196 N ARG B 180 SHEET 3 AA9 4 ASN B 209 GLN B 219 -1 O ASN B 209 N VAL B 197 SHEET 4 AA9 4 PRO B 225 LEU B 235 -1 O LEU B 230 N MET B 214 SHEET 1 AB1 4 ARG B 241 VAL B 249 0 SHEET 2 AB1 4 GLY B 252 VAL B 259 -1 O TYR B 258 N LYS B 242 SHEET 3 AB1 4 THR B 275 PHE B 282 -1 O THR B 279 N MET B 255 SHEET 4 AB1 4 VAL B 287 ILE B 292 -1 O THR B 288 N LEU B 280 SHEET 1 AB2 3 TRP B 301 PRO B 306 0 SHEET 2 AB2 3 LYS B 317 VAL B 326 -1 O TYR B 323 N VAL B 305 SHEET 3 AB2 3 ILE B 312 PHE B 314 -1 N ILE B 312 O ILE B 319 SHEET 1 AB3 4 TRP B 301 PRO B 306 0 SHEET 2 AB3 4 LYS B 317 VAL B 326 -1 O TYR B 323 N VAL B 305 SHEET 3 AB3 4 ARG B 374 ALA B 383 -1 O GLN B 376 N GLY B 324 SHEET 4 AB3 4 GLU B 393 VAL B 395 -1 O GLU B 393 N VAL B 381 SHEET 1 AB4 4 GLY B 408 ILE B 413 0 SHEET 2 AB4 4 ARG B 416 GLN B 421 -1 O LEU B 418 N LEU B 411 SHEET 3 AB4 4 LEU B 431 THR B 438 -1 O TYR B 433 N TYR B 419 SHEET 4 AB4 4 SER B 446 TRP B 451 -1 O ASN B 448 N SER B 436 SHEET 1 AB5 4 PRO B 483 PRO B 485 0 SHEET 2 AB5 4 PHE B 501 LEU B 506 -1 O THR B 502 N TRP B 484 SHEET 3 AB5 4 PRO B 515 SER B 520 -1 O SER B 520 N PHE B 501 SHEET 4 AB5 4 LEU B 525 PRO B 530 -1 O ALA B 529 N LEU B 517 SSBOND 1 CYS A 178 CYS A 202 1555 1555 2.04 SSBOND 2 CYS A 192 CYS A 253 1555 1555 2.03 SSBOND 3 CYS A 244 CYS A 257 1555 1555 2.03 SSBOND 4 CYS A 350 CYS A 471 1555 1555 2.03 SSBOND 5 CYS A 382 CYS A 392 1555 1555 2.04 SSBOND 6 CYS A 465 CYS A 475 1555 1555 2.03 SSBOND 7 CYS A 545 CYS A 556 1555 1555 2.03 SSBOND 8 CYS B 178 CYS B 202 1555 1555 2.04 SSBOND 9 CYS B 192 CYS B 253 1555 1555 2.03 SSBOND 10 CYS B 244 CYS B 257 1555 1555 2.04 SSBOND 11 CYS B 350 CYS B 471 1555 1555 2.04 SSBOND 12 CYS B 382 CYS B 392 1555 1555 2.03 SSBOND 13 CYS B 465 CYS B 475 1555 1555 2.03 SSBOND 14 CYS B 545 CYS B 556 1555 1555 2.03 LINK ND2 ASN A 284 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 329 C1 NAG A 602 1555 1555 1.45 LINK ND2 ASN A 400 C1 NAG A 603 1555 1555 1.43 LINK ND2 ASN A 448 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 507 C1 NAG A 605 1555 1555 1.44 LINK ND2 ASN B 284 C1 NAG B 601 1555 1555 1.44 LINK ND2 ASN B 329 C1 NAG B 602 1555 1555 1.45 LINK ND2 ASN B 400 C1 NAG B 603 1555 1555 1.44 LINK ND2 ASN B 448 C1 NAG B 604 1555 1555 1.44 LINK ND2 ASN B 507 C1 NAG B 605 1555 1555 1.44 LINK O4 GLC C 1 C1 GAL C 2 1555 1555 1.40 LINK O3 GAL C 2 C2 SIA C 3 1555 1555 1.55 LINK O4 GLC D 1 C1 GAL D 2 1555 1555 1.40 LINK O3 GAL D 2 C2 SIA D 3 1555 1555 1.54 CRYST1 136.875 136.875 177.274 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007306 0.004218 0.000000 0.00000 SCALE2 0.000000 0.008436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005641 0.00000