HEADER HYDROLASE 03-APR-16 5B4A TITLE CRYSTAL STRUCTURE OF LPXH WITH LIPID X IN SPACEGROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE PYROPHOSPHATASE LPXH, UDP-2,3- COMPND 5 DIACYLGLUCOSAMINE DIPHOSPHATASE; COMPND 6 EC: 3.6.1.54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: LPXH, PA1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LPXH, LIPID A, LIPID X, UDP-2, 3-DIACYLGLUCOSAMINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.OKADA,H.WAKABAYASHI,M.YAO,I.TANAKA REVDAT 3 08-NOV-23 5B4A 1 REMARK REVDAT 2 26-FEB-20 5B4A 1 REMARK REVDAT 1 28-SEP-16 5B4A 0 JRNL AUTH C.OKADA,H.WAKABAYASHI,M.KOBAYASHI,A.SHINODA,I.TANAKA,M.YAO JRNL TITL CRYSTAL STRUCTURES OF THE UDP-DIACYLGLUCOSAMINE JRNL TITL 2 PYROPHOSPHOHYDRASE LPXH FROM PSEUDOMONAS AERUGINOSA JRNL REF SCI REP V. 6 32822 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27609419 JRNL DOI 10.1038/SREP32822 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2919 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4154 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4038 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5608 ; 1.375 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9243 ; 0.968 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 5.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;31.914 ;21.388 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;11.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;14.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4575 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1029 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1946 ; 1.968 ; 1.553 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1945 ; 1.967 ; 1.550 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2429 ; 2.760 ; 2.317 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2430 ; 2.759 ; 2.321 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2208 ; 3.537 ; 2.059 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2208 ; 3.536 ; 2.059 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3180 ; 5.414 ; 2.908 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 18209 ; 6.710 ;16.043 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 17586 ; 6.504 ;15.525 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6341 24.9860 -3.7676 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.0151 REMARK 3 T33: 0.0115 T12: 0.0037 REMARK 3 T13: 0.0049 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.1165 L22: 0.5016 REMARK 3 L33: 0.2983 L12: -0.0820 REMARK 3 L13: 0.0738 L23: -0.3033 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: 0.0240 S13: -0.0323 REMARK 3 S21: 0.0659 S22: 0.0453 S23: 0.0398 REMARK 3 S31: -0.0792 S32: -0.0271 S33: -0.0163 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2747 0.9184 20.5523 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: 0.0088 REMARK 3 T33: 0.0107 T12: 0.0060 REMARK 3 T13: 0.0038 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3595 L22: 0.2562 REMARK 3 L33: 0.1621 L12: -0.2301 REMARK 3 L13: 0.0323 L23: 0.0878 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0048 S13: -0.0072 REMARK 3 S21: 0.0005 S22: 0.0033 S23: 0.0188 REMARK 3 S31: 0.0050 S32: 0.0214 S33: 0.0119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5B4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-16. REMARK 100 THE DEPOSITION ID IS D_1300000507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54200 REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5B49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M L-PROLINE, 0.1M HEPES PH 7.4, REMARK 280 9.0% PEG 3350, 5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.40250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 55.43 -97.17 REMARK 500 HIS A 195 -45.18 74.03 REMARK 500 ARG B 29 -56.00 -131.91 REMARK 500 LEU B 39 52.98 -94.21 REMARK 500 HIS B 195 -45.53 73.48 REMARK 500 LEU B 241 66.83 -119.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 662 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 5.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LP5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LP5 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B49 RELATED DB: PDB REMARK 900 RELATED ID: 5B4B RELATED DB: PDB REMARK 900 RELATED ID: 5B4C RELATED DB: PDB REMARK 900 RELATED ID: 5B4D RELATED DB: PDB DBREF 5B4A A 1 240 UNP Q9I2V0 LPXH_PSEAE 1 240 DBREF 5B4A B 1 240 UNP Q9I2V0 LPXH_PSEAE 1 240 SEQADV 5B4A LEU A 241 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A GLU A 242 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS A 243 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS A 244 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS A 245 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS A 246 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS A 247 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS A 248 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A LEU B 241 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A GLU B 242 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS B 243 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS B 244 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS B 245 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS B 246 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS B 247 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4A HIS B 248 UNP Q9I2V0 EXPRESSION TAG SEQRES 1 A 248 MET SER VAL LEU PHE ILE SER ASP LEU HIS LEU GLU ALA SEQRES 2 A 248 GLU ARG PRO ASP ILE THR ARG ALA PHE LEU SER PHE LEU SEQRES 3 A 248 ASP GLU ARG ALA ARG ARG ALA GLU ALA LEU TYR ILE LEU SEQRES 4 A 248 GLY ASP PHE PHE GLU ALA TRP ILE GLY ASP ASP GLY MET SEQRES 5 A 248 ASP ALA PHE GLN ARG SER ILE ALA GLN SER LEU ARG GLN SEQRES 6 A 248 VAL ALA ASP GLY GLY THR ARG ILE TYR LEU MET HIS GLY SEQRES 7 A 248 ASN ARG ASP PHE LEU ILE GLY LYS ALA PHE CYS ARG GLU SEQRES 8 A 248 ALA GLY CYS THR LEU LEU PRO ASP PRO SER VAL ILE ASP SEQRES 9 A 248 LEU TYR GLY GLU PRO VAL LEU LEU MET HIS GLY ASP SER SEQRES 10 A 248 LEU CYS THR ARG ASP GLU ALA TYR MET ARG LEU ARG ARG SEQRES 11 A 248 TRP LEU ARG ASN PRO LEU THR LEU TRP VAL LEU ARG HIS SEQRES 12 A 248 LEU PRO LEU ALA THR ARG HIS LYS LEU ALA ARG LYS LEU SEQRES 13 A 248 ARG LYS GLU SER ARG ALA GLN THR ARG MET LYS ALA VAL SEQRES 14 A 248 ASP ILE ILE ASP VAL THR PRO GLU GLU VAL PRO ARG VAL SEQRES 15 A 248 MET ARG GLY HIS GLY VAL ARG THR LEU ILE HIS GLY HIS SEQRES 16 A 248 THR HIS ARG PRO ALA GLU HIS PRO LEU ASP ILE ASP GLY SEQRES 17 A 248 GLN PRO ALA ARG ARG ILE VAL LEU GLY ASP TRP ASP ARG SEQRES 18 A 248 GLN GLY TRP ALA LEU GLU ILE ASP ALA ASN GLY HIS ARG SEQRES 19 A 248 GLN ALA PRO PHE PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 248 HIS SEQRES 1 B 248 MET SER VAL LEU PHE ILE SER ASP LEU HIS LEU GLU ALA SEQRES 2 B 248 GLU ARG PRO ASP ILE THR ARG ALA PHE LEU SER PHE LEU SEQRES 3 B 248 ASP GLU ARG ALA ARG ARG ALA GLU ALA LEU TYR ILE LEU SEQRES 4 B 248 GLY ASP PHE PHE GLU ALA TRP ILE GLY ASP ASP GLY MET SEQRES 5 B 248 ASP ALA PHE GLN ARG SER ILE ALA GLN SER LEU ARG GLN SEQRES 6 B 248 VAL ALA ASP GLY GLY THR ARG ILE TYR LEU MET HIS GLY SEQRES 7 B 248 ASN ARG ASP PHE LEU ILE GLY LYS ALA PHE CYS ARG GLU SEQRES 8 B 248 ALA GLY CYS THR LEU LEU PRO ASP PRO SER VAL ILE ASP SEQRES 9 B 248 LEU TYR GLY GLU PRO VAL LEU LEU MET HIS GLY ASP SER SEQRES 10 B 248 LEU CYS THR ARG ASP GLU ALA TYR MET ARG LEU ARG ARG SEQRES 11 B 248 TRP LEU ARG ASN PRO LEU THR LEU TRP VAL LEU ARG HIS SEQRES 12 B 248 LEU PRO LEU ALA THR ARG HIS LYS LEU ALA ARG LYS LEU SEQRES 13 B 248 ARG LYS GLU SER ARG ALA GLN THR ARG MET LYS ALA VAL SEQRES 14 B 248 ASP ILE ILE ASP VAL THR PRO GLU GLU VAL PRO ARG VAL SEQRES 15 B 248 MET ARG GLY HIS GLY VAL ARG THR LEU ILE HIS GLY HIS SEQRES 16 B 248 THR HIS ARG PRO ALA GLU HIS PRO LEU ASP ILE ASP GLY SEQRES 17 B 248 GLN PRO ALA ARG ARG ILE VAL LEU GLY ASP TRP ASP ARG SEQRES 18 B 248 GLN GLY TRP ALA LEU GLU ILE ASP ALA ASN GLY HIS ARG SEQRES 19 B 248 GLN ALA PRO PHE PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 20 B 248 HIS HET LP5 A 301 48 HET GOL A 302 6 HET LP5 B 301 48 HET GOL B 302 6 HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5- HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY) HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 LP5 2(C34 H66 N O12 P) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *578(H2 O) HELIX 1 AA1 ARG A 15 ARG A 29 1 15 HELIX 2 AA2 GLY A 48 MET A 52 5 5 HELIX 3 AA3 ASP A 53 GLY A 69 1 17 HELIX 4 AA4 GLY A 85 GLY A 93 1 9 HELIX 5 AA5 GLY A 115 CYS A 119 5 5 HELIX 6 AA6 ASP A 122 ARG A 133 1 12 HELIX 7 AA7 ASN A 134 HIS A 143 1 10 HELIX 8 AA8 PRO A 145 ARG A 165 1 21 HELIX 9 AA9 ALA A 168 ASP A 173 1 6 HELIX 10 AB1 GLU A 177 HIS A 186 1 10 HELIX 11 AB2 ARG B 15 ARG B 29 1 15 HELIX 12 AB3 ALA B 30 ALA B 33 5 4 HELIX 13 AB4 GLY B 48 MET B 52 5 5 HELIX 14 AB5 ASP B 53 GLY B 69 1 17 HELIX 15 AB6 GLY B 85 GLY B 93 1 9 HELIX 16 AB7 GLY B 115 CYS B 119 5 5 HELIX 17 AB8 ASP B 122 ARG B 133 1 12 HELIX 18 AB9 ASN B 134 LEU B 144 1 11 HELIX 19 AC1 PRO B 145 ARG B 165 1 21 HELIX 20 AC2 ALA B 168 ASP B 173 1 6 HELIX 21 AC3 GLU B 177 GLY B 187 1 11 SHEET 1 AA1 6 THR A 95 LEU A 97 0 SHEET 2 AA1 6 ARG A 72 MET A 76 1 N LEU A 75 O LEU A 97 SHEET 3 AA1 6 ALA A 35 LEU A 39 1 N ILE A 38 O MET A 76 SHEET 4 AA1 6 VAL A 3 ILE A 6 1 N LEU A 4 O TYR A 37 SHEET 5 AA1 6 GLY A 223 ASP A 229 -1 O ILE A 228 N VAL A 3 SHEET 6 AA1 6 GLY A 232 PHE A 238 -1 O GLY A 232 N ASP A 229 SHEET 1 AA2 5 SER A 101 LEU A 105 0 SHEET 2 AA2 5 GLU A 108 LEU A 112 -1 O GLU A 108 N LEU A 105 SHEET 3 AA2 5 THR A 190 HIS A 193 1 O ILE A 192 N LEU A 111 SHEET 4 AA2 5 GLN A 209 VAL A 215 1 O ILE A 214 N LEU A 191 SHEET 5 AA2 5 ALA A 200 ILE A 206 -1 N HIS A 202 O ARG A 213 SHEET 1 AA3 6 THR B 95 LEU B 97 0 SHEET 2 AA3 6 ARG B 72 MET B 76 1 N LEU B 75 O LEU B 97 SHEET 3 AA3 6 ALA B 35 LEU B 39 1 N ILE B 38 O MET B 76 SHEET 4 AA3 6 VAL B 3 ILE B 6 1 N LEU B 4 O TYR B 37 SHEET 5 AA3 6 GLN B 222 ASP B 229 -1 O ILE B 228 N VAL B 3 SHEET 6 AA3 6 GLY B 232 PRO B 239 -1 O ARG B 234 N GLU B 227 SHEET 1 AA4 5 SER B 101 LEU B 105 0 SHEET 2 AA4 5 GLU B 108 MET B 113 -1 O GLU B 108 N LEU B 105 SHEET 3 AA4 5 THR B 190 HIS B 193 1 O ILE B 192 N LEU B 111 SHEET 4 AA4 5 GLN B 209 VAL B 215 1 O ILE B 214 N LEU B 191 SHEET 5 AA4 5 ALA B 200 ILE B 206 -1 N HIS B 202 O ARG B 213 CISPEP 1 ASP A 99 PRO A 100 0 6.11 CISPEP 2 ASP B 99 PRO B 100 0 5.61 SITE 1 AC1 18 ASN A 79 ARG A 80 LEU A 83 ASP A 122 SITE 2 AC1 18 ALA A 124 TYR A 125 ARG A 149 ARG A 157 SITE 3 AC1 18 SER A 160 THR A 164 LYS A 167 HIS A 195 SITE 4 AC1 18 HOH A 417 HOH A 422 HOH A 434 HOH A 478 SITE 5 AC1 18 HOH A 542 HIS B 246 SITE 1 AC2 7 GLU A 44 HIS A 150 ALA A 153 ARG A 157 SITE 2 AC2 7 HOH A 403 HOH A 513 HOH A 559 SITE 1 AC3 22 TRP B 46 ASN B 79 ARG B 80 GLY B 107 SITE 2 AC3 22 ASP B 122 ALA B 124 TYR B 125 LEU B 141 SITE 3 AC3 22 LEU B 156 ARG B 157 SER B 160 THR B 164 SITE 4 AC3 22 LYS B 167 HIS B 195 HOH B 410 HOH B 420 SITE 5 AC3 22 HOH B 460 HOH B 477 HOH B 502 HOH B 513 SITE 6 AC3 22 HOH B 520 HOH B 539 SITE 1 AC4 8 HIS B 10 ARG B 80 ARG B 157 ASP B 218 SITE 2 AC4 8 ASP B 220 HOH B 407 HOH B 410 HOH B 485 CRYST1 49.016 108.805 51.685 90.00 92.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020402 0.000000 0.000806 0.00000 SCALE2 0.000000 0.009191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019363 0.00000