HEADER HYDROLASE 03-APR-16 5B4D TITLE CRYSTAL STRUCTURE OF H10N MUTANT OF LPXH COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE PYROPHOSPHATASE LPXH, UDP-2,3- COMPND 5 DIACYLGLUCOSAMINE DIPHOSPHATASE; COMPND 6 EC: 3.6.1.54; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: LPXH, PA1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LPXH, LIPID A, LIPID X, UDP-2, 3-DIACYLGLUCOSAMINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.OKADA,H.WAKABAYASHI,M.YAO,I.TANAKA REVDAT 3 08-NOV-23 5B4D 1 REMARK REVDAT 2 26-FEB-20 5B4D 1 REMARK REVDAT 1 28-SEP-16 5B4D 0 JRNL AUTH C.OKADA,H.WAKABAYASHI,M.KOBAYASHI,A.SHINODA,I.TANAKA,M.YAO JRNL TITL CRYSTAL STRUCTURES OF THE UDP-DIACYLGLUCOSAMINE JRNL TITL 2 PYROPHOSPHOHYDRASE LPXH FROM PSEUDOMONAS AERUGINOSA JRNL REF SCI REP V. 6 32822 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27609419 JRNL DOI 10.1038/SREP32822 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 56369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 592 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3855 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3747 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5211 ; 1.464 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8553 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 5.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;31.293 ;21.546 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;12.642 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;18.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4301 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 953 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1856 ; 2.406 ; 2.060 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1855 ; 2.406 ; 2.059 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2313 ; 3.195 ; 3.064 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2314 ; 3.195 ; 3.065 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1999 ; 3.997 ; 2.602 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1999 ; 3.992 ; 2.602 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2899 ; 6.059 ; 3.688 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 17196 ; 7.858 ;20.936 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 16498 ; 7.681 ;20.332 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7895 -17.1109 14.1585 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0127 REMARK 3 T33: 0.0137 T12: 0.0088 REMARK 3 T13: 0.0020 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.5848 L22: 0.0041 REMARK 3 L33: 0.4989 L12: -0.0353 REMARK 3 L13: 0.0942 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0233 S13: 0.0116 REMARK 3 S21: -0.0041 S22: -0.0059 S23: -0.0037 REMARK 3 S31: -0.0065 S32: -0.0279 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 303 REMARK 3 ORIGIN FOR THE GROUP (A): -32.6408 -18.5039 35.1733 REMARK 3 T TENSOR REMARK 3 T11: 0.0045 T22: 0.0069 REMARK 3 T33: 0.0123 T12: -0.0037 REMARK 3 T13: 0.0028 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.6172 L22: 0.0179 REMARK 3 L33: 0.4809 L12: -0.0979 REMARK 3 L13: 0.1078 L23: 0.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0381 S13: 0.0041 REMARK 3 S21: 0.0042 S22: -0.0122 S23: 0.0037 REMARK 3 S31: -0.0137 S32: 0.0137 S33: 0.0392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5B4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-16. REMARK 100 THE DEPOSITION ID IS D_1300000513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55100 REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5B49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M PROLINE, 0.1M HEPES PH 7.0, 10.0% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.78200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.17900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.94400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.17900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.78200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.94400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 ARG A 161 REMARK 465 ALA A 162 REMARK 465 GLN A 163 REMARK 465 THR A 164 REMARK 465 ARG A 165 REMARK 465 MET A 166 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 MET B 1 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 ARG B 161 REMARK 465 ALA B 162 REMARK 465 GLN B 163 REMARK 465 THR B 164 REMARK 465 ARG B 165 REMARK 465 GLU B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 492 O HOH A 559 1.93 REMARK 500 O HOH B 525 O HOH B 625 1.94 REMARK 500 O HOH A 456 O HOH A 499 1.96 REMARK 500 O HOH A 556 O HOH A 564 2.03 REMARK 500 O HOH B 506 O HOH B 556 2.04 REMARK 500 O HOH A 380 O HOH A 462 2.04 REMARK 500 OD2 ASP B 207 O HOH B 401 2.13 REMARK 500 O HOH B 502 O HOH B 534 2.15 REMARK 500 OE2 GLU B 44 NH2 ARG B 80 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 75.37 -119.51 REMARK 500 LEU A 39 54.84 -101.62 REMARK 500 HIS A 195 -47.28 75.14 REMARK 500 LEU B 39 55.33 -95.95 REMARK 500 HIS B 195 -49.53 76.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 601 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 690 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 691 DISTANCE = 6.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B49 RELATED DB: PDB REMARK 900 RELATED ID: 5B4A RELATED DB: PDB REMARK 900 RELATED ID: 5B4B RELATED DB: PDB REMARK 900 RELATED ID: 5B4C RELATED DB: PDB DBREF 5B4D A 1 240 UNP Q9I2V0 LPXH_PSEAE 1 240 DBREF 5B4D B 1 240 UNP Q9I2V0 LPXH_PSEAE 1 240 SEQADV 5B4D ASN A 10 UNP Q9I2V0 HIS 10 ENGINEERED MUTATION SEQADV 5B4D LEU A 241 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D GLU A 242 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS A 243 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS A 244 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS A 245 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS A 246 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS A 247 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS A 248 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D ASN B 10 UNP Q9I2V0 HIS 10 ENGINEERED MUTATION SEQADV 5B4D LEU B 241 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D GLU B 242 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS B 243 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS B 244 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS B 245 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS B 246 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS B 247 UNP Q9I2V0 EXPRESSION TAG SEQADV 5B4D HIS B 248 UNP Q9I2V0 EXPRESSION TAG SEQRES 1 A 248 MET SER VAL LEU PHE ILE SER ASP LEU ASN LEU GLU ALA SEQRES 2 A 248 GLU ARG PRO ASP ILE THR ARG ALA PHE LEU SER PHE LEU SEQRES 3 A 248 ASP GLU ARG ALA ARG ARG ALA GLU ALA LEU TYR ILE LEU SEQRES 4 A 248 GLY ASP PHE PHE GLU ALA TRP ILE GLY ASP ASP GLY MET SEQRES 5 A 248 ASP ALA PHE GLN ARG SER ILE ALA GLN SER LEU ARG GLN SEQRES 6 A 248 VAL ALA ASP GLY GLY THR ARG ILE TYR LEU MET HIS GLY SEQRES 7 A 248 ASN ARG ASP PHE LEU ILE GLY LYS ALA PHE CYS ARG GLU SEQRES 8 A 248 ALA GLY CYS THR LEU LEU PRO ASP PRO SER VAL ILE ASP SEQRES 9 A 248 LEU TYR GLY GLU PRO VAL LEU LEU MET HIS GLY ASP SER SEQRES 10 A 248 LEU CYS THR ARG ASP GLU ALA TYR MET ARG LEU ARG ARG SEQRES 11 A 248 TRP LEU ARG ASN PRO LEU THR LEU TRP VAL LEU ARG HIS SEQRES 12 A 248 LEU PRO LEU ALA THR ARG HIS LYS LEU ALA ARG LYS LEU SEQRES 13 A 248 ARG LYS GLU SER ARG ALA GLN THR ARG MET LYS ALA VAL SEQRES 14 A 248 ASP ILE ILE ASP VAL THR PRO GLU GLU VAL PRO ARG VAL SEQRES 15 A 248 MET ARG GLY HIS GLY VAL ARG THR LEU ILE HIS GLY HIS SEQRES 16 A 248 THR HIS ARG PRO ALA GLU HIS PRO LEU ASP ILE ASP GLY SEQRES 17 A 248 GLN PRO ALA ARG ARG ILE VAL LEU GLY ASP TRP ASP ARG SEQRES 18 A 248 GLN GLY TRP ALA LEU GLU ILE ASP ALA ASN GLY HIS ARG SEQRES 19 A 248 GLN ALA PRO PHE PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 248 HIS SEQRES 1 B 248 MET SER VAL LEU PHE ILE SER ASP LEU ASN LEU GLU ALA SEQRES 2 B 248 GLU ARG PRO ASP ILE THR ARG ALA PHE LEU SER PHE LEU SEQRES 3 B 248 ASP GLU ARG ALA ARG ARG ALA GLU ALA LEU TYR ILE LEU SEQRES 4 B 248 GLY ASP PHE PHE GLU ALA TRP ILE GLY ASP ASP GLY MET SEQRES 5 B 248 ASP ALA PHE GLN ARG SER ILE ALA GLN SER LEU ARG GLN SEQRES 6 B 248 VAL ALA ASP GLY GLY THR ARG ILE TYR LEU MET HIS GLY SEQRES 7 B 248 ASN ARG ASP PHE LEU ILE GLY LYS ALA PHE CYS ARG GLU SEQRES 8 B 248 ALA GLY CYS THR LEU LEU PRO ASP PRO SER VAL ILE ASP SEQRES 9 B 248 LEU TYR GLY GLU PRO VAL LEU LEU MET HIS GLY ASP SER SEQRES 10 B 248 LEU CYS THR ARG ASP GLU ALA TYR MET ARG LEU ARG ARG SEQRES 11 B 248 TRP LEU ARG ASN PRO LEU THR LEU TRP VAL LEU ARG HIS SEQRES 12 B 248 LEU PRO LEU ALA THR ARG HIS LYS LEU ALA ARG LYS LEU SEQRES 13 B 248 ARG LYS GLU SER ARG ALA GLN THR ARG MET LYS ALA VAL SEQRES 14 B 248 ASP ILE ILE ASP VAL THR PRO GLU GLU VAL PRO ARG VAL SEQRES 15 B 248 MET ARG GLY HIS GLY VAL ARG THR LEU ILE HIS GLY HIS SEQRES 16 B 248 THR HIS ARG PRO ALA GLU HIS PRO LEU ASP ILE ASP GLY SEQRES 17 B 248 GLN PRO ALA ARG ARG ILE VAL LEU GLY ASP TRP ASP ARG SEQRES 18 B 248 GLN GLY TRP ALA LEU GLU ILE ASP ALA ASN GLY HIS ARG SEQRES 19 B 248 GLN ALA PRO PHE PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 20 B 248 HIS HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *592(H2 O) HELIX 1 AA1 ARG A 15 ARG A 29 1 15 HELIX 2 AA2 ALA A 30 ALA A 33 5 4 HELIX 3 AA3 GLY A 48 MET A 52 5 5 HELIX 4 AA4 ASP A 53 GLY A 69 1 17 HELIX 5 AA5 GLY A 85 GLY A 93 1 9 HELIX 6 AA6 GLY A 115 CYS A 119 5 5 HELIX 7 AA7 ASP A 122 ARG A 133 1 12 HELIX 8 AA8 ASN A 134 HIS A 143 1 10 HELIX 9 AA9 PRO A 145 LYS A 158 1 14 HELIX 10 AB1 LYS A 167 ILE A 171 5 5 HELIX 11 AB2 GLU A 177 GLY A 187 1 11 HELIX 12 AB3 ARG B 15 ARG B 29 1 15 HELIX 13 AB4 ALA B 30 ALA B 33 5 4 HELIX 14 AB5 GLY B 48 MET B 52 5 5 HELIX 15 AB6 ASP B 53 GLY B 69 1 17 HELIX 16 AB7 GLY B 85 GLY B 93 1 9 HELIX 17 AB8 GLY B 115 CYS B 119 5 5 HELIX 18 AB9 ASP B 122 ARG B 133 1 12 HELIX 19 AC1 ASN B 134 HIS B 143 1 10 HELIX 20 AC2 PRO B 145 LYS B 158 1 14 HELIX 21 AC3 LYS B 167 ILE B 171 5 5 HELIX 22 AC4 GLU B 177 HIS B 186 1 10 SHEET 1 AA1 6 THR A 95 LEU A 97 0 SHEET 2 AA1 6 ARG A 72 MET A 76 1 N LEU A 75 O THR A 95 SHEET 3 AA1 6 ALA A 35 LEU A 39 1 N LEU A 36 O TYR A 74 SHEET 4 AA1 6 VAL A 3 ILE A 6 1 N LEU A 4 O TYR A 37 SHEET 5 AA1 6 GLN A 222 ASP A 229 -1 O ILE A 228 N VAL A 3 SHEET 6 AA1 6 GLY A 232 PRO A 239 -1 O GLY A 232 N ASP A 229 SHEET 1 AA2 5 SER A 101 LEU A 105 0 SHEET 2 AA2 5 GLU A 108 MET A 113 -1 O GLU A 108 N LEU A 105 SHEET 3 AA2 5 THR A 190 HIS A 193 1 O THR A 190 N LEU A 111 SHEET 4 AA2 5 GLN A 209 VAL A 215 1 O ILE A 214 N LEU A 191 SHEET 5 AA2 5 ALA A 200 ILE A 206 -1 N HIS A 202 O ARG A 213 SHEET 1 AA3 6 THR B 95 LEU B 97 0 SHEET 2 AA3 6 ARG B 72 MET B 76 1 N LEU B 75 O THR B 95 SHEET 3 AA3 6 ALA B 35 LEU B 39 1 N LEU B 36 O TYR B 74 SHEET 4 AA3 6 VAL B 3 ILE B 6 1 N ILE B 6 O LEU B 39 SHEET 5 AA3 6 GLN B 222 ASP B 229 -1 O ILE B 228 N VAL B 3 SHEET 6 AA3 6 GLY B 232 PRO B 239 -1 O ARG B 234 N GLU B 227 SHEET 1 AA4 5 SER B 101 LEU B 105 0 SHEET 2 AA4 5 GLU B 108 MET B 113 -1 O GLU B 108 N LEU B 105 SHEET 3 AA4 5 THR B 190 HIS B 193 1 O THR B 190 N LEU B 111 SHEET 4 AA4 5 GLN B 209 VAL B 215 1 O ILE B 214 N LEU B 191 SHEET 5 AA4 5 ALA B 200 ILE B 206 -1 N HIS B 202 O ARG B 213 CISPEP 1 ASP A 99 PRO A 100 0 10.48 CISPEP 2 ASP B 99 PRO B 100 0 11.95 SITE 1 AC1 6 GLU A 201 HOH A 309 ALA B 200 GLN B 235 SITE 2 AC1 6 HOH B 406 HOH B 413 SITE 1 AC2 7 LEU A 23 PRO B 16 ARG B 20 PHE B 55 SITE 2 AC2 7 HOH B 405 HOH B 414 HOH B 489 SITE 1 AC3 5 GLU B 34 ARG B 72 ASP B 104 TYR B 106 SITE 2 AC3 5 HOH B 420 CRYST1 67.564 87.888 98.358 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010167 0.00000