HEADER TRANSFERASE 03-APR-16 5B4E TITLE SULFUR TRANSFERASE TTUA IN COMPLEX WITH IRON SULFUR CLUSTER AND ATP TITLE 2 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFUR TRANSFERASE TTUA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRNA SULFUR TRANSFERASE, VEG136 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- SOURCE 3 163 / DSM 7039); SOURCE 4 ORGANISM_TAXID: 262724; SOURCE 5 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 6 GENE: TT_C0106; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SULFUR TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,S.NARAI,Y.TANAKA,M.YAO REVDAT 4 20-MAR-24 5B4E 1 REMARK REVDAT 3 24-MAY-17 5B4E 1 JRNL REVDAT 2 17-MAY-17 5B4E 1 TITLE COMPND JRNL REVDAT 1 03-MAY-17 5B4E 0 JRNL AUTH M.CHEN,S.I.ASAI,S.NARAI,S.NAMBU,N.OMURA,Y.SAKAGUCHI, JRNL AUTH 2 T.SUZUKI,M.IKEDA-SAITO,K.WATANABE,M.YAO,N.SHIGI,Y.TANAKA JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 OXYGEN-SENSITIVE 2-THIOURIDINE SYNTHESIS CATALYZED BY AN JRNL TITL 3 IRON-SULFUR PROTEIN TTUA JRNL REF PROC. NATL. ACAD. SCI. V. 114 4954 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28439027 JRNL DOI 10.1073/PNAS.1615585114 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4624 - 5.1591 1.00 2882 150 0.2297 0.2499 REMARK 3 2 5.1591 - 4.0957 1.00 2715 143 0.2081 0.2360 REMARK 3 3 4.0957 - 3.5782 1.00 2645 140 0.1959 0.1919 REMARK 3 4 3.5782 - 3.2511 1.00 2640 140 0.1984 0.2332 REMARK 3 5 3.2511 - 3.0181 1.00 2607 135 0.2165 0.2298 REMARK 3 6 3.0181 - 2.8402 1.00 2603 136 0.2336 0.2787 REMARK 3 7 2.8402 - 2.6980 0.99 2566 138 0.2681 0.3054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2521 REMARK 3 ANGLE : 0.964 3406 REMARK 3 CHIRALITY : 0.047 368 REMARK 3 PLANARITY : 0.004 424 REMARK 3 DIHEDRAL : 18.624 961 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN F_PLUS/MINUS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5B4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-16. REMARK 100 THE DEPOSITION ID IS D_1300000475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.35 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.698 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.740 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.62 REMARK 200 R MERGE FOR SHELL (I) : 0.72100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE (PH 3.8-5.6), 30 REMARK 280 -60%(V/V) 1,2-PROPANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.95133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 177.90267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.42700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 222.37833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.47567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.95133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 177.90267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 222.37833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 133.42700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.47567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -204.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.47567 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 176 REMARK 465 THR A 177 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 ARG A 180 REMARK 465 ARG A 260 REMARK 465 PRO A 261 REMARK 465 ARG A 262 REMARK 465 LEU A 263 REMARK 465 ASP A 264 REMARK 465 VAL A 265 REMARK 465 GLY A 266 REMARK 465 GLU A 267 REMARK 465 GLU A 268 REMARK 465 ARG A 319 REMARK 465 ALA A 320 REMARK 465 GLY A 321 REMARK 465 VAL A 322 REMARK 465 GLU A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 194 O2 SO4 A 409 1.85 REMARK 500 O2A ANP A 403 O HOH A 501 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 101 -3.05 -144.44 REMARK 500 PRO A 223 68.79 -61.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 6 SG 107.6 REMARK 620 3 CYS A 22 SG 110.9 110.8 REMARK 620 4 HIS A 25 ND1 111.6 111.2 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 404 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 SF4 A 404 S1 115.9 REMARK 620 3 SF4 A 404 S3 120.9 89.5 REMARK 620 4 SF4 A 404 S4 136.4 92.2 90.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 404 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 133 SG REMARK 620 2 SF4 A 404 S1 124.0 REMARK 620 3 SF4 A 404 S2 111.3 92.1 REMARK 620 4 SF4 A 404 S3 137.3 89.5 90.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 404 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 222 SG REMARK 620 2 SF4 A 404 S2 133.4 REMARK 620 3 SF4 A 404 S3 125.4 91.0 REMARK 620 4 SF4 A 404 S4 113.4 91.6 90.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 274 SG REMARK 620 2 CYS A 277 SG 105.2 REMARK 620 3 CYS A 286 SG 107.1 118.7 REMARK 620 4 CYS A 289 SG 117.0 105.5 103.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B4F RELATED DB: PDB REMARK 900 RELATED ID: 5B4G RELATED DB: PDB DBREF 5B4E A 1 321 UNP Q72LF3 Q72LF3_THET2 1 321 SEQADV 5B4E VAL A 322 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4E GLU A 323 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4E HIS A 324 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4E HIS A 325 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4E HIS A 326 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4E HIS A 327 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4E HIS A 328 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4E HIS A 329 UNP Q72LF3 EXPRESSION TAG SEQRES 1 A 329 MET VAL CYS LYS VAL CYS GLY GLN LYS ALA GLN VAL GLU SEQRES 2 A 329 MET ARG SER ARG GLY LEU ALA LEU CYS ARG GLU HIS TYR SEQRES 3 A 329 LEU ASP TRP PHE VAL LYS GLU THR GLU ARG ALA ILE ARG SEQRES 4 A 329 ARG HIS ARG MET LEU LEU PRO GLY GLU ARG VAL LEU VAL SEQRES 5 A 329 ALA VAL SER GLY GLY LYS ASP SER LEU ALA LEU TRP ASP SEQRES 6 A 329 VAL LEU SER ARG LEU GLY TYR GLN ALA VAL GLY LEU HIS SEQRES 7 A 329 ILE GLU LEU GLY ILE GLY GLU TYR SER LYS ARG SER LEU SEQRES 8 A 329 GLU VAL THR GLN ALA PHE ALA ARG GLU ARG GLY LEU GLU SEQRES 9 A 329 LEU LEU VAL VAL ASP LEU LYS GLU ALA TYR GLY PHE GLY SEQRES 10 A 329 VAL PRO GLU LEU ALA ARG LEU SER GLY ARG VAL ALA CYS SEQRES 11 A 329 SER ALA CYS GLY LEU SER LYS ARG TYR ILE ILE ASN GLN SEQRES 12 A 329 VAL ALA VAL GLU GLU GLY PHE ARG VAL VAL ALA THR GLY SEQRES 13 A 329 HIS ASN LEU ASP ASP GLU ALA ALA VAL LEU PHE GLY ASN SEQRES 14 A 329 LEU LEU ASN PRO GLN GLU GLU THR LEU SER ARG GLN GLY SEQRES 15 A 329 PRO VAL LEU PRO GLU LYS PRO GLY LEU ALA ALA ARG VAL SEQRES 16 A 329 LYS PRO PHE TYR ARG PHE SER GLU ARG GLU VAL LEU SER SEQRES 17 A 329 TYR THR LEU LEU ARG GLY ILE ARG TYR LEU HIS GLU GLU SEQRES 18 A 329 CYS PRO ASN ALA LYS GLY ALA LYS SER LEU LEU TYR LYS SEQRES 19 A 329 GLU ALA LEU ASN LEU VAL GLU ARG SER MET PRO GLY ALA SEQRES 20 A 329 LYS LEU ARG PHE LEU ASP GLY PHE LEU GLU LYS ILE ARG SEQRES 21 A 329 PRO ARG LEU ASP VAL GLY GLU GLU VAL ALA LEU ARG GLU SEQRES 22 A 329 CYS GLU ARG CYS GLY TYR PRO THR THR GLY ALA VAL CYS SEQRES 23 A 329 ALA PHE CYS ARG MET TRP ASP ALA VAL TYR ARG ARG ALA SEQRES 24 A 329 LYS LYS ARG LYS LEU LEU PRO GLU GLU VAL SER PHE ARG SEQRES 25 A 329 PRO ARG VAL LYS PRO LEU ARG ALA GLY VAL GLU HIS HIS SEQRES 26 A 329 HIS HIS HIS HIS HET ZN A 401 1 HET ZN A 402 1 HET ANP A 403 31 HET SF4 A 404 8 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET IPA A 411 4 HETNAM ZN ZINC ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SO4 SULFATE ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 SF4 FE4 S4 FORMUL 6 SO4 6(O4 S 2-) FORMUL 12 IPA C3 H8 O FORMUL 13 HOH *39(H2 O) HELIX 1 AA1 ARG A 15 GLY A 18 5 4 HELIX 2 AA2 CYS A 22 HIS A 41 1 20 HELIX 3 AA3 GLY A 57 LEU A 70 1 14 HELIX 4 AA4 ILE A 83 GLU A 100 1 18 HELIX 5 AA5 LEU A 110 GLY A 115 1 6 HELIX 6 AA6 GLY A 117 GLY A 126 1 10 HELIX 7 AA7 VAL A 128 GLU A 148 1 21 HELIX 8 AA8 ASN A 158 ASN A 172 1 15 HELIX 9 AA9 SER A 202 ARG A 213 1 12 HELIX 10 AB1 GLY A 227 MET A 244 1 18 HELIX 11 AB2 GLY A 246 GLU A 257 1 12 HELIX 12 AB3 CYS A 286 LYS A 301 1 16 SHEET 1 AA1 2 VAL A 12 MET A 14 0 SHEET 2 AA1 2 LEU A 19 LEU A 21 -1 O LEU A 19 N MET A 14 SHEET 1 AA2 6 LEU A 105 ASP A 109 0 SHEET 2 AA2 6 GLN A 73 GLU A 80 1 N GLY A 76 O LEU A 106 SHEET 3 AA2 6 ARG A 49 ALA A 53 1 N VAL A 52 O VAL A 75 SHEET 4 AA2 6 VAL A 152 ALA A 154 1 O ALA A 154 N LEU A 51 SHEET 5 AA2 6 ALA A 193 VAL A 195 1 O ALA A 193 N VAL A 153 SHEET 6 AA2 6 VAL A 184 LEU A 185 -1 N LEU A 185 O ARG A 194 SHEET 1 AA3 2 ARG A 272 GLU A 273 0 SHEET 2 AA3 2 PRO A 280 THR A 281 -1 O THR A 281 N ARG A 272 LINK SG CYS A 3 ZN ZN A 401 1555 1555 2.19 LINK SG CYS A 6 ZN ZN A 401 1555 1555 2.21 LINK SG CYS A 22 ZN ZN A 401 1555 1555 2.21 LINK ND1 HIS A 25 ZN ZN A 401 1555 1555 2.20 LINK SG CYS A 130 FE2 SF4 A 404 1555 1555 2.31 LINK SG CYS A 133 FE4 SF4 A 404 1555 1555 2.30 LINK SG CYS A 222 FE1 SF4 A 404 1555 1555 2.28 LINK SG CYS A 274 ZN ZN A 402 1555 1555 2.49 LINK SG CYS A 277 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 286 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 289 ZN ZN A 402 1555 1555 2.32 CISPEP 1 ARG A 302 LYS A 303 0 -24.60 CISPEP 2 PRO A 317 LEU A 318 0 1.72 SITE 1 AC1 4 CYS A 3 CYS A 6 CYS A 22 HIS A 25 SITE 1 AC2 4 CYS A 274 CYS A 277 CYS A 286 CYS A 289 SITE 1 AC3 15 ALA A 53 VAL A 54 SER A 55 GLY A 57 SITE 2 AC3 15 LYS A 58 ASP A 59 SER A 60 LEU A 77 SITE 3 AC3 15 ILE A 79 GLY A 156 HIS A 157 ASP A 161 SITE 4 AC3 15 HOH A 501 HOH A 504 HOH A 511 SITE 1 AC4 4 CYS A 130 CYS A 133 CYS A 222 ASN A 224 SITE 1 AC5 7 VAL A 2 LYS A 9 ALA A 10 ARG A 297 SITE 2 AC5 7 LYS A 301 SO4 A 406 HOH A 507 SITE 1 AC6 5 VAL A 2 ARG A 298 LYS A 301 SO4 A 405 SITE 2 AC6 5 HOH A 523 SITE 1 AC7 6 GLN A 8 LYS A 9 ARG A 297 LYS A 300 SITE 2 AC7 6 ARG A 312 IPA A 411 SITE 1 AC8 6 SER A 202 ARG A 204 GLU A 241 LYS A 248 SITE 2 AC8 6 HOH A 502 HOH A 517 SITE 1 AC9 5 ARG A 138 HIS A 157 GLN A 181 ARG A 194 SITE 2 AC9 5 LYS A 196 SITE 1 AD1 4 THR A 281 THR A 282 CYS A 286 ALA A 287 SITE 1 AD2 8 GLN A 8 ARG A 276 ASP A 293 LYS A 300 SITE 2 AD2 8 VAL A 309 SER A 310 PHE A 311 SO4 A 407 CRYST1 92.911 92.911 266.854 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010763 0.006214 0.000000 0.00000 SCALE2 0.000000 0.012428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003747 0.00000