HEADER PROTEIN TRANSPORT/VIRAL PROTEIN 25-APR-16 5B56 TITLE CRYSTAL STRUCTURE OF HIV-1 VPR C-TERMINAL DOMAIN AND DIBB-M-IMPORTIN- TITLE 2 ALPHA2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN SUBUNIT ALPHA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 70-529; COMPND 5 SYNONYM: IMPORTIN ALPHA P1,KARYOPHERIN SUBUNIT ALPHA-2,PENDULIN,PORE COMPND 6 TARGETING COMPLEX 58 KDA SUBUNIT,PTAC58,RAG COHORT PROTEIN 1,SRP1- COMPND 7 ALPHA; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEIN VPR; COMPND 11 CHAIN: C, D, E, F; COMPND 12 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 85-96; COMPND 13 SYNONYM: R ORF PROTEIN,VIRAL PROTEIN R; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KPNA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HIV-1 M:B_89.6; SOURCE 11 ORGANISM_COMMON: HIV-1; SOURCE 12 ORGANISM_TAXID: 401671; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS ARM REPEAT, ALL ALPHA PROTEIN, NUCLEAR IMPORT, IMPORTIN-BETA, NLS- KEYWDS 2 CARGO, PROTEIN TRANSPORT-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.MIYATAKE,A.SANJOH,G.MATUSDA,T.MURAKAMI,H.MURAKAMI,K.HAGIWARA, AUTHOR 2 M.YOKOYAMA,H.SATO,Y.MIYAMOTO,N.DOHMAE,Y.AIDA REVDAT 4 08-NOV-23 5B56 1 REMARK REVDAT 3 26-FEB-20 5B56 1 JRNL REMARK REVDAT 2 29-JUN-16 5B56 1 JRNL REVDAT 1 01-JUN-16 5B56 0 JRNL AUTH H.MIYATAKE,A.SANJOH,T.MURAKAMI,H.MURAKAMI,G.MATSUDA, JRNL AUTH 2 K.HAGIWARA,M.YOKOYAMA,H.SATO,Y.MIYAMOTO,N.DOHMAE,Y.AIDA JRNL TITL MOLECULAR MECHANISM OF HIV-1 VPR FOR BINDING TO JRNL TITL 2 IMPORTIN-ALPHA JRNL REF J.MOL.BIOL. V. 428 2744 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27181198 JRNL DOI 10.1016/J.JMB.2016.05.003 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 57284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4064 - 6.3342 0.98 2989 174 0.1544 0.1867 REMARK 3 2 6.3342 - 5.0301 0.99 2962 168 0.1811 0.2278 REMARK 3 3 5.0301 - 4.3949 0.99 2987 159 0.1377 0.1727 REMARK 3 4 4.3949 - 3.9934 0.99 3002 136 0.1331 0.1480 REMARK 3 5 3.9934 - 3.7074 0.98 2899 161 0.1401 0.1997 REMARK 3 6 3.7074 - 3.4889 0.98 2921 157 0.1592 0.2229 REMARK 3 7 3.4889 - 3.3142 0.98 2910 164 0.1831 0.2200 REMARK 3 8 3.3142 - 3.1700 0.96 2863 145 0.1943 0.2402 REMARK 3 9 3.1700 - 3.0480 0.95 2845 151 0.1969 0.2535 REMARK 3 10 3.0480 - 2.9428 0.92 2744 141 0.1952 0.2369 REMARK 3 11 2.9428 - 2.8508 0.90 2660 146 0.2044 0.2680 REMARK 3 12 2.8508 - 2.7694 0.89 2659 121 0.2184 0.2790 REMARK 3 13 2.7694 - 2.6965 0.88 2584 142 0.2226 0.2863 REMARK 3 14 2.6965 - 2.6307 0.86 2530 128 0.2372 0.2743 REMARK 3 15 2.6307 - 2.5709 0.83 2502 120 0.2532 0.3171 REMARK 3 16 2.5709 - 2.5162 0.79 2327 123 0.2723 0.3254 REMARK 3 17 2.5162 - 2.4659 0.76 2239 112 0.2939 0.3302 REMARK 3 18 2.4659 - 2.4193 0.75 2229 130 0.3007 0.3364 REMARK 3 19 2.4193 - 2.3761 0.71 2100 120 0.3081 0.3318 REMARK 3 20 2.3761 - 2.3359 0.66 1911 121 0.3236 0.3302 REMARK 3 21 2.3359 - 2.2982 0.51 1515 87 0.3438 0.4092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7063 REMARK 3 ANGLE : 0.724 9601 REMARK 3 CHIRALITY : 0.028 1147 REMARK 3 PLANARITY : 0.003 1239 REMARK 3 DIHEDRAL : 14.235 2610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 70:133) REMARK 3 ORIGIN FOR THE GROUP (A): 68.1292 -16.2423 45.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.7096 T22: 0.7267 REMARK 3 T33: 0.6193 T12: -0.0642 REMARK 3 T13: 0.0876 T23: 0.1212 REMARK 3 L TENSOR REMARK 3 L11: 1.3210 L22: 1.4479 REMARK 3 L33: 1.1499 L12: 0.5620 REMARK 3 L13: -0.4905 L23: 0.9592 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.4480 S13: 0.1265 REMARK 3 S21: -0.7355 S22: 0.0048 S23: -0.5473 REMARK 3 S31: -0.1383 S32: 0.9289 S33: 0.0025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 134:362) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2426 -8.6729 55.7619 REMARK 3 T TENSOR REMARK 3 T11: 0.3233 T22: 0.3649 REMARK 3 T33: 0.5425 T12: -0.0352 REMARK 3 T13: -0.0499 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.8931 L22: 0.8217 REMARK 3 L33: -0.0197 L12: -2.4870 REMARK 3 L13: 0.6370 L23: -0.6147 REMARK 3 S TENSOR REMARK 3 S11: -0.1173 S12: -0.2569 S13: 0.0103 REMARK 3 S21: 0.1165 S22: 0.0640 S23: 0.0282 REMARK 3 S31: -0.0630 S32: -0.0191 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 363:498) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6151 0.2210 36.6654 REMARK 3 T TENSOR REMARK 3 T11: 0.4564 T22: 0.4634 REMARK 3 T33: 0.3729 T12: -0.0534 REMARK 3 T13: -0.0307 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.2438 L22: 2.9220 REMARK 3 L33: 2.1954 L12: -0.7699 REMARK 3 L13: -0.0816 L23: -0.6420 REMARK 3 S TENSOR REMARK 3 S11: 0.2367 S12: 0.5257 S13: -0.2270 REMARK 3 S21: -0.7650 S22: -0.0483 S23: 0.2095 REMARK 3 S31: 0.4872 S32: -0.2497 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 71:222) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8855 -20.2957 -19.6548 REMARK 3 T TENSOR REMARK 3 T11: 0.4806 T22: 0.4391 REMARK 3 T33: 0.3429 T12: 0.0514 REMARK 3 T13: 0.0003 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 2.4582 L22: 3.8553 REMARK 3 L33: 3.9949 L12: -0.3580 REMARK 3 L13: -0.1811 L23: -0.4060 REMARK 3 S TENSOR REMARK 3 S11: 0.1707 S12: 0.2184 S13: -0.2129 REMARK 3 S21: -0.1322 S22: -0.0030 S23: -0.4563 REMARK 3 S31: 0.2622 S32: 0.4060 S33: 0.0017 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 223:481) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2397 -33.8352 19.7313 REMARK 3 T TENSOR REMARK 3 T11: 0.5467 T22: 0.4025 REMARK 3 T33: 0.3830 T12: 0.0736 REMARK 3 T13: 0.0409 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.0239 L22: 2.1497 REMARK 3 L33: 4.4367 L12: -0.9219 REMARK 3 L13: 0.8374 L23: -2.1353 REMARK 3 S TENSOR REMARK 3 S11: -0.2064 S12: -0.0929 S13: 0.0764 REMARK 3 S21: 0.1894 S22: 0.2366 S23: -0.0667 REMARK 3 S31: -0.3974 S32: -0.1731 S33: -0.0016 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 482:502) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8747 -30.5366 48.1630 REMARK 3 T TENSOR REMARK 3 T11: 1.7336 T22: 0.9896 REMARK 3 T33: 1.1026 T12: -0.0764 REMARK 3 T13: -0.1562 T23: -0.3103 REMARK 3 L TENSOR REMARK 3 L11: 0.7085 L22: 2.4465 REMARK 3 L33: 1.9851 L12: 0.2641 REMARK 3 L13: -0.2106 L23: -1.0138 REMARK 3 S TENSOR REMARK 3 S11: -0.4752 S12: -0.5301 S13: 0.3854 REMARK 3 S21: -0.0271 S22: -0.1735 S23: -1.4478 REMARK 3 S31: -0.8843 S32: 1.5862 S33: -0.1377 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN C AND (RESID 85:96) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1867 -11.9217 45.2395 REMARK 3 T TENSOR REMARK 3 T11: 0.8831 T22: 0.5138 REMARK 3 T33: 0.9397 T12: 0.0010 REMARK 3 T13: 0.0700 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 0.1382 L22: 0.0768 REMARK 3 L33: 1.0367 L12: 0.0854 REMARK 3 L13: -0.2858 L23: -0.2452 REMARK 3 S TENSOR REMARK 3 S11: -0.3716 S12: -0.0426 S13: -1.4077 REMARK 3 S21: -0.2659 S22: -0.3698 S23: 0.1514 REMARK 3 S31: 1.3266 S32: 0.2081 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN D AND (RESID 85:96) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9276 -24.0354 22.2413 REMARK 3 T TENSOR REMARK 3 T11: 1.1937 T22: 0.6849 REMARK 3 T33: 0.6920 T12: 0.1004 REMARK 3 T13: -0.0511 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 0.1988 L22: 0.4367 REMARK 3 L33: 0.2383 L12: 0.0124 REMARK 3 L13: 0.1611 L23: -0.1466 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.2800 S13: 0.7450 REMARK 3 S21: 0.5575 S22: 0.0749 S23: -0.3470 REMARK 3 S31: -0.9015 S32: -0.2976 S33: 0.0091 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN E AND (RESID 85:96) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9768 -7.4701 46.0297 REMARK 3 T TENSOR REMARK 3 T11: 1.3162 T22: 0.7493 REMARK 3 T33: 1.5097 T12: -0.0974 REMARK 3 T13: -0.1018 T23: 0.0946 REMARK 3 L TENSOR REMARK 3 L11: 1.5742 L22: 0.2846 REMARK 3 L33: 0.0340 L12: 0.3031 REMARK 3 L13: 0.2020 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.1295 S13: 0.4696 REMARK 3 S21: -0.5145 S22: -0.1584 S23: -0.0898 REMARK 3 S31: -0.3631 S32: 0.1147 S33: 0.0079 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN F AND (RESID 85:96) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9659 -28.2288 -1.0976 REMARK 3 T TENSOR REMARK 3 T11: 1.8033 T22: 1.1848 REMARK 3 T33: 1.0256 T12: -0.0188 REMARK 3 T13: 0.0180 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 0.0890 L22: 0.2337 REMARK 3 L33: 0.9740 L12: 0.0689 REMARK 3 L13: 0.2646 L23: 0.4073 REMARK 3 S TENSOR REMARK 3 S11: -0.2277 S12: -0.9824 S13: -0.1572 REMARK 3 S21: 1.3303 S22: -0.3231 S23: -0.0930 REMARK 3 S31: -0.1207 S32: -0.2257 S33: 0.0116 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-16. REMARK 100 THE DEPOSITION ID IS D_1300000549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.298 REMARK 200 RESOLUTION RANGE LOW (A) : 31.523 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.1_1168 REMARK 200 STARTING MODEL: 3KND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES, 100MM AMMONIUM SULFATE, 10MM REMARK 280 MGCL2, 20-23%(W/V) PEG8000, 5MM DTT, PH 6.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.77750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 499 REMARK 465 GLU A 500 REMARK 465 GLU A 501 REMARK 465 GLU A 502 REMARK 465 ASP A 503 REMARK 465 GLN A 504 REMARK 465 ASN A 505 REMARK 465 VAL A 506 REMARK 465 VAL A 507 REMARK 465 PRO A 508 REMARK 465 GLU A 509 REMARK 465 THR A 510 REMARK 465 THR A 511 REMARK 465 SER A 512 REMARK 465 GLU A 513 REMARK 465 GLY A 514 REMARK 465 PHE A 515 REMARK 465 ALA A 516 REMARK 465 PHE A 517 REMARK 465 GLN A 518 REMARK 465 VAL A 519 REMARK 465 GLN A 520 REMARK 465 ASP A 521 REMARK 465 GLY A 522 REMARK 465 ALA A 523 REMARK 465 PRO A 524 REMARK 465 GLY A 525 REMARK 465 THR A 526 REMARK 465 PHE A 527 REMARK 465 ASN A 528 REMARK 465 PHE A 529 REMARK 465 ASN B 70 REMARK 465 ASP B 503 REMARK 465 GLN B 504 REMARK 465 ASN B 505 REMARK 465 VAL B 506 REMARK 465 VAL B 507 REMARK 465 PRO B 508 REMARK 465 GLU B 509 REMARK 465 THR B 510 REMARK 465 THR B 511 REMARK 465 SER B 512 REMARK 465 GLU B 513 REMARK 465 GLY B 514 REMARK 465 PHE B 515 REMARK 465 ALA B 516 REMARK 465 PHE B 517 REMARK 465 GLN B 518 REMARK 465 VAL B 519 REMARK 465 GLN B 520 REMARK 465 ASP B 521 REMARK 465 GLY B 522 REMARK 465 ALA B 523 REMARK 465 PRO B 524 REMARK 465 GLY B 525 REMARK 465 THR B 526 REMARK 465 PHE B 527 REMARK 465 ASN B 528 REMARK 465 PHE B 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 150 NH1 ARG E 87 2.08 REMARK 500 O HOH A 640 O HOH A 703 2.11 REMARK 500 OE1 GLU A 250 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 71 166.09 62.45 REMARK 500 ASN A 75 67.45 61.88 REMARK 500 ASN A 239 155.73 72.66 REMARK 500 LYS A 432 55.36 -90.09 REMARK 500 GLU A 456 39.24 -140.96 REMARK 500 ARG A 478 50.62 -97.22 REMARK 500 THR B 73 -153.10 -171.14 REMARK 500 VAL B 74 -153.89 88.09 REMARK 500 ASN B 75 174.06 106.25 REMARK 500 LYS B 108 -154.99 -152.78 REMARK 500 CYS B 133 88.64 -162.58 REMARK 500 ASN B 239 159.64 70.87 REMARK 500 ARG B 478 -138.29 -88.17 REMARK 500 HIS B 479 150.37 67.28 REMARK 500 GLU B 480 -175.75 -66.31 REMARK 500 ASN B 481 148.65 69.34 REMARK 500 TYR B 485 -70.48 -55.53 REMARK 500 PHE B 496 -107.02 -129.54 REMARK 500 SER B 497 -147.32 60.42 REMARK 500 VAL B 498 -122.47 67.94 REMARK 500 GLU B 500 -37.35 -166.88 REMARK 500 GLU B 501 142.68 168.50 REMARK 500 GLN C 86 115.14 -162.39 REMARK 500 ALA C 93 -94.87 -91.39 REMARK 500 SER C 94 145.05 -175.58 REMARK 500 ALA D 93 -90.75 -71.16 REMARK 500 SER D 94 157.50 175.50 REMARK 500 LYS D 95 -71.62 -109.81 REMARK 500 ASN E 91 -55.91 -135.70 REMARK 500 ALA E 93 122.14 168.48 REMARK 500 SER E 94 -120.90 -147.95 REMARK 500 LYS E 95 127.35 -178.70 REMARK 500 GLN F 86 129.75 63.42 REMARK 500 ARG F 87 -145.42 -98.68 REMARK 500 ARG F 88 96.08 63.51 REMARK 500 ARG F 90 74.64 -176.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 864 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 868 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 869 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 871 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 872 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH A 874 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 8.68 ANGSTROMS REMARK 525 HOH B 803 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 804 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 805 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 806 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH B 807 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH B 808 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH B 809 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B 810 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH B 811 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH B 812 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH B 813 DISTANCE = 9.59 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WPT RELATED DB: PDB REMARK 900 3WPT CONTAINS HOMODIMERIC STRUCTURE OF DIBB-HUMAN-IMPORTIN-ALPHA1. DBREF 5B56 A 70 529 UNP P52293 IMA1_MOUSE 70 529 DBREF 5B56 B 70 529 UNP P52293 IMA1_MOUSE 70 529 DBREF 5B56 C 85 96 UNP Q73369 VPR_HV1B9 85 96 DBREF 5B56 D 85 96 UNP Q73369 VPR_HV1B9 85 96 DBREF 5B56 E 85 96 UNP Q73369 VPR_HV1B9 85 96 DBREF 5B56 F 85 96 UNP Q73369 VPR_HV1B9 85 96 SEQRES 1 A 460 ASN GLN GLY THR VAL ASN TRP SER VAL GLU ASP ILE VAL SEQRES 2 A 460 LYS GLY ILE ASN SER ASN ASN LEU GLU SER GLN LEU GLN SEQRES 3 A 460 ALA THR GLN ALA ALA ARG LYS LEU LEU SER ARG GLU LYS SEQRES 4 A 460 GLN PRO PRO ILE ASP ASN ILE ILE ARG ALA GLY LEU ILE SEQRES 5 A 460 PRO LYS PHE VAL SER PHE LEU GLY LYS THR ASP CYS SER SEQRES 6 A 460 PRO ILE GLN PHE GLU SER ALA TRP ALA LEU THR ASN ILE SEQRES 7 A 460 ALA SER GLY THR SER GLU GLN THR LYS ALA VAL VAL ASP SEQRES 8 A 460 GLY GLY ALA ILE PRO ALA PHE ILE SER LEU LEU ALA SER SEQRES 9 A 460 PRO HIS ALA HIS ILE SER GLU GLN ALA VAL TRP ALA LEU SEQRES 10 A 460 GLY ASN ILE ALA GLY ASP GLY SER ALA PHE ARG ASP LEU SEQRES 11 A 460 VAL ILE LYS HIS GLY ALA ILE ASP PRO LEU LEU ALA LEU SEQRES 12 A 460 LEU ALA VAL PRO ASP LEU SER THR LEU ALA CYS GLY TYR SEQRES 13 A 460 LEU ARG ASN LEU THR TRP THR LEU SER ASN LEU CYS ARG SEQRES 14 A 460 ASN LYS ASN PRO ALA PRO PRO LEU ASP ALA VAL GLU GLN SEQRES 15 A 460 ILE LEU PRO THR LEU VAL ARG LEU LEU HIS HIS ASN ASP SEQRES 16 A 460 PRO GLU VAL LEU ALA ASP SER CYS TRP ALA ILE SER TYR SEQRES 17 A 460 LEU THR ASP GLY PRO ASN GLU ARG ILE GLU MET VAL VAL SEQRES 18 A 460 LYS LYS GLY VAL VAL PRO GLN LEU VAL LYS LEU LEU GLY SEQRES 19 A 460 ALA THR GLU LEU PRO ILE VAL THR PRO ALA LEU ARG ALA SEQRES 20 A 460 ILE GLY ASN ILE VAL THR GLY THR ASP GLU GLN THR GLN SEQRES 21 A 460 LYS VAL ILE ASP ALA GLY ALA LEU ALA VAL PHE PRO SER SEQRES 22 A 460 LEU LEU THR ASN PRO LYS THR ASN ILE GLN LYS GLU ALA SEQRES 23 A 460 THR TRP THR MET SER ASN ILE THR ALA GLY ARG GLN ASP SEQRES 24 A 460 GLN ILE GLN GLN VAL VAL ASN HIS GLY LEU VAL PRO PHE SEQRES 25 A 460 LEU VAL GLY VAL LEU SER LYS ALA ASP PHE LYS THR GLN SEQRES 26 A 460 LYS GLU ALA ALA TRP ALA ILE THR ASN TYR THR SER GLY SEQRES 27 A 460 GLY THR VAL GLU GLN ILE VAL TYR LEU VAL HIS CYS GLY SEQRES 28 A 460 ILE ILE GLU PRO LEU MET ASN LEU LEU SER ALA LYS ASP SEQRES 29 A 460 THR LYS ILE ILE GLN VAL ILE LEU ASP ALA ILE SER ASN SEQRES 30 A 460 ILE PHE GLN ALA ALA GLU LYS LEU GLY GLU THR GLU LYS SEQRES 31 A 460 LEU SER ILE MET ILE GLU GLU CYS GLY GLY LEU ASP LYS SEQRES 32 A 460 ILE GLU ALA LEU GLN ARG HIS GLU ASN GLU SER VAL TYR SEQRES 33 A 460 LYS ALA SER LEU ASN LEU ILE GLU LYS TYR PHE SER VAL SEQRES 34 A 460 GLU GLU GLU GLU ASP GLN ASN VAL VAL PRO GLU THR THR SEQRES 35 A 460 SER GLU GLY PHE ALA PHE GLN VAL GLN ASP GLY ALA PRO SEQRES 36 A 460 GLY THR PHE ASN PHE SEQRES 1 B 460 ASN GLN GLY THR VAL ASN TRP SER VAL GLU ASP ILE VAL SEQRES 2 B 460 LYS GLY ILE ASN SER ASN ASN LEU GLU SER GLN LEU GLN SEQRES 3 B 460 ALA THR GLN ALA ALA ARG LYS LEU LEU SER ARG GLU LYS SEQRES 4 B 460 GLN PRO PRO ILE ASP ASN ILE ILE ARG ALA GLY LEU ILE SEQRES 5 B 460 PRO LYS PHE VAL SER PHE LEU GLY LYS THR ASP CYS SER SEQRES 6 B 460 PRO ILE GLN PHE GLU SER ALA TRP ALA LEU THR ASN ILE SEQRES 7 B 460 ALA SER GLY THR SER GLU GLN THR LYS ALA VAL VAL ASP SEQRES 8 B 460 GLY GLY ALA ILE PRO ALA PHE ILE SER LEU LEU ALA SER SEQRES 9 B 460 PRO HIS ALA HIS ILE SER GLU GLN ALA VAL TRP ALA LEU SEQRES 10 B 460 GLY ASN ILE ALA GLY ASP GLY SER ALA PHE ARG ASP LEU SEQRES 11 B 460 VAL ILE LYS HIS GLY ALA ILE ASP PRO LEU LEU ALA LEU SEQRES 12 B 460 LEU ALA VAL PRO ASP LEU SER THR LEU ALA CYS GLY TYR SEQRES 13 B 460 LEU ARG ASN LEU THR TRP THR LEU SER ASN LEU CYS ARG SEQRES 14 B 460 ASN LYS ASN PRO ALA PRO PRO LEU ASP ALA VAL GLU GLN SEQRES 15 B 460 ILE LEU PRO THR LEU VAL ARG LEU LEU HIS HIS ASN ASP SEQRES 16 B 460 PRO GLU VAL LEU ALA ASP SER CYS TRP ALA ILE SER TYR SEQRES 17 B 460 LEU THR ASP GLY PRO ASN GLU ARG ILE GLU MET VAL VAL SEQRES 18 B 460 LYS LYS GLY VAL VAL PRO GLN LEU VAL LYS LEU LEU GLY SEQRES 19 B 460 ALA THR GLU LEU PRO ILE VAL THR PRO ALA LEU ARG ALA SEQRES 20 B 460 ILE GLY ASN ILE VAL THR GLY THR ASP GLU GLN THR GLN SEQRES 21 B 460 LYS VAL ILE ASP ALA GLY ALA LEU ALA VAL PHE PRO SER SEQRES 22 B 460 LEU LEU THR ASN PRO LYS THR ASN ILE GLN LYS GLU ALA SEQRES 23 B 460 THR TRP THR MET SER ASN ILE THR ALA GLY ARG GLN ASP SEQRES 24 B 460 GLN ILE GLN GLN VAL VAL ASN HIS GLY LEU VAL PRO PHE SEQRES 25 B 460 LEU VAL GLY VAL LEU SER LYS ALA ASP PHE LYS THR GLN SEQRES 26 B 460 LYS GLU ALA ALA TRP ALA ILE THR ASN TYR THR SER GLY SEQRES 27 B 460 GLY THR VAL GLU GLN ILE VAL TYR LEU VAL HIS CYS GLY SEQRES 28 B 460 ILE ILE GLU PRO LEU MET ASN LEU LEU SER ALA LYS ASP SEQRES 29 B 460 THR LYS ILE ILE GLN VAL ILE LEU ASP ALA ILE SER ASN SEQRES 30 B 460 ILE PHE GLN ALA ALA GLU LYS LEU GLY GLU THR GLU LYS SEQRES 31 B 460 LEU SER ILE MET ILE GLU GLU CYS GLY GLY LEU ASP LYS SEQRES 32 B 460 ILE GLU ALA LEU GLN ARG HIS GLU ASN GLU SER VAL TYR SEQRES 33 B 460 LYS ALA SER LEU ASN LEU ILE GLU LYS TYR PHE SER VAL SEQRES 34 B 460 GLU GLU GLU GLU ASP GLN ASN VAL VAL PRO GLU THR THR SEQRES 35 B 460 SER GLU GLY PHE ALA PHE GLN VAL GLN ASP GLY ALA PRO SEQRES 36 B 460 GLY THR PHE ASN PHE SEQRES 1 C 12 GLN GLN ARG ARG THR ARG ASN GLY ALA SER LYS SER SEQRES 1 D 12 GLN GLN ARG ARG THR ARG ASN GLY ALA SER LYS SER SEQRES 1 E 12 GLN GLN ARG ARG THR ARG ASN GLY ALA SER LYS SER SEQRES 1 F 12 GLN GLN ARG ARG THR ARG ASN GLY ALA SER LYS SER FORMUL 7 HOH *512(H2 O) HELIX 1 AA1 SER A 77 ASN A 86 1 10 HELIX 2 AA2 ASN A 89 SER A 105 1 17 HELIX 3 AA3 PRO A 111 ALA A 118 1 8 HELIX 4 AA4 LEU A 120 GLY A 129 1 10 HELIX 5 AA5 CYS A 133 GLY A 150 1 18 HELIX 6 AA6 THR A 151 GLY A 161 1 11 HELIX 7 AA7 GLY A 162 LEU A 171 1 10 HELIX 8 AA8 HIS A 175 ASP A 192 1 18 HELIX 9 AA9 GLY A 193 HIS A 203 1 11 HELIX 10 AB1 ALA A 205 ALA A 214 1 10 HELIX 11 AB2 ASP A 217 LEU A 221 5 5 HELIX 12 AB3 ALA A 222 LEU A 236 1 15 HELIX 13 AB4 PRO A 245 HIS A 261 1 17 HELIX 14 AB5 ASP A 264 ASP A 280 1 17 HELIX 15 AB6 PRO A 282 LYS A 291 1 10 HELIX 16 AB7 VAL A 294 GLY A 303 1 10 HELIX 17 AB8 GLU A 306 VAL A 321 1 16 HELIX 18 AB9 THR A 324 ALA A 334 1 11 HELIX 19 AC1 GLY A 335 ALA A 338 5 4 HELIX 20 AC2 VAL A 339 THR A 345 1 7 HELIX 21 AC3 LYS A 348 THR A 363 1 16 HELIX 22 AC4 ARG A 366 HIS A 376 1 11 HELIX 23 AC5 LEU A 378 ALA A 389 1 12 HELIX 24 AC6 ASP A 390 GLY A 408 1 19 HELIX 25 AC7 THR A 409 CYS A 419 1 11 HELIX 26 AC8 ILE A 421 LEU A 428 1 8 HELIX 27 AC9 LEU A 429 ALA A 431 5 3 HELIX 28 AD1 ASP A 433 GLY A 455 1 23 HELIX 29 AD2 GLU A 456 CYS A 467 1 12 HELIX 30 AD3 GLY A 468 LEU A 476 1 9 HELIX 31 AD4 GLN A 477 HIS A 479 5 3 HELIX 32 AD5 ASN A 481 PHE A 496 1 16 HELIX 33 AD6 SER B 77 ASN B 86 1 10 HELIX 34 AD7 ASN B 89 ARG B 106 1 18 HELIX 35 AD8 PRO B 111 ALA B 118 1 8 HELIX 36 AD9 LEU B 120 LEU B 128 1 9 HELIX 37 AE1 CYS B 133 SER B 149 1 17 HELIX 38 AE2 THR B 151 GLY B 161 1 11 HELIX 39 AE3 GLY B 162 LEU B 171 1 10 HELIX 40 AE4 HIS B 175 GLY B 191 1 17 HELIX 41 AE5 GLY B 193 HIS B 203 1 11 HELIX 42 AE6 ALA B 205 ALA B 214 1 10 HELIX 43 AE7 ASP B 217 LEU B 221 5 5 HELIX 44 AE8 ALA B 222 CYS B 237 1 16 HELIX 45 AE9 PRO B 245 LEU B 260 1 16 HELIX 46 AF1 ASP B 264 THR B 279 1 16 HELIX 47 AF2 PRO B 282 LYS B 291 1 10 HELIX 48 AF3 VAL B 294 GLY B 303 1 10 HELIX 49 AF4 GLU B 306 THR B 322 1 17 HELIX 50 AF5 THR B 324 ALA B 334 1 11 HELIX 51 AF6 GLY B 335 ALA B 338 5 4 HELIX 52 AF7 VAL B 339 THR B 345 1 7 HELIX 53 AF8 LYS B 348 THR B 363 1 16 HELIX 54 AF9 ARG B 366 HIS B 376 1 11 HELIX 55 AG1 LEU B 378 LYS B 388 1 11 HELIX 56 AG2 ASP B 390 GLY B 408 1 19 HELIX 57 AG3 THR B 409 CYS B 419 1 11 HELIX 58 AG4 ILE B 421 LEU B 428 1 8 HELIX 59 AG5 LEU B 429 ALA B 431 5 3 HELIX 60 AG6 ASP B 433 LYS B 453 1 21 HELIX 61 AG7 GLU B 456 GLU B 466 1 11 HELIX 62 AG8 GLY B 468 LEU B 476 1 9 HELIX 63 AG9 GLU B 482 PHE B 496 1 15 CISPEP 1 ASN A 241 PRO A 242 0 -1.76 CISPEP 2 GLN B 71 GLY B 72 0 -1.90 CISPEP 3 GLU B 107 LYS B 108 0 1.37 CISPEP 4 ASN B 241 PRO B 242 0 -1.63 CISPEP 5 ASN E 91 GLY E 92 0 -5.19 CRYST1 91.021 81.555 101.545 90.00 97.78 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010986 0.000000 0.001501 0.00000 SCALE2 0.000000 0.012262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009939 0.00000