HEADER HYDROLASE 24-MAY-16 5B62 TITLE CRYSTAL STRUCTURE OF N-TERMINAL AMIDASE WITH ASN-GLU-ALA PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NTA1P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ASN-GLU-ALA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN CEN.PK113-7D); SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 889517; SOURCE 5 STRAIN: CEN.PK113-7D; SOURCE 6 GENE: CENPK1137D_1355; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE CEN.PK113-7D; SOURCE 12 ORGANISM_TAXID: 889517 KEYWDS N-END RULE, NITRILASE SUPERFAMILY, NTA1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.KIM,S.-J.OH,B.-G.LEE,H.K.SONG REVDAT 2 20-MAR-24 5B62 1 REMARK REVDAT 1 11-JAN-17 5B62 0 JRNL AUTH M.K.KIM,S.J.OH,B.G.LEE,H.K.SONG JRNL TITL STRUCTURAL BASIS FOR DUAL SPECIFICITY OF YEAST N-TERMINAL JRNL TITL 2 AMIDASE IN THE N-END RULE PATHWAY. JRNL REF PROC. NATL. ACAD. SCI. V. 113 12438 2016 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 27791147 JRNL DOI 10.1073/PNAS.1612620113 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0434 - 6.0721 1.00 1279 143 0.2158 0.2800 REMARK 3 2 6.0721 - 4.8244 1.00 1218 135 0.1923 0.2278 REMARK 3 3 4.8244 - 4.2160 1.00 1203 133 0.1632 0.2078 REMARK 3 4 4.2160 - 3.8311 1.00 1185 133 0.1886 0.2369 REMARK 3 5 3.8311 - 3.5569 1.00 1187 131 0.2011 0.2395 REMARK 3 6 3.5569 - 3.3474 1.00 1177 131 0.2377 0.2925 REMARK 3 7 3.3474 - 3.1799 1.00 1167 130 0.2627 0.2895 REMARK 3 8 3.1799 - 3.0416 0.99 1170 130 0.2649 0.3126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3368 REMARK 3 ANGLE : 0.452 4579 REMARK 3 CHIRALITY : 0.019 519 REMARK 3 PLANARITY : 0.002 588 REMARK 3 DIHEDRAL : 7.963 1182 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1300000598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10652 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 33.041 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MG ACETATE TETRAHYDRATE, 0.2M NA REMARK 280 CACODYLATE PH6.5, 20% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 66.89800 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.44800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.72400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.89800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.17200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.17200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.89800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.72400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 66.89800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.44800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 66.89800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.44800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 66.89800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.17200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 29.72400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.89800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 29.72400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.17200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 66.89800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 66.89800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.44800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 643 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 ILE A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 MET A 11 REMARK 465 SER A 12 REMARK 465 ASP A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 HIS A 345 REMARK 465 LYS A 346 REMARK 465 GLU A 347 REMARK 465 ASP A 348 REMARK 465 THR A 349 REMARK 465 ILE A 350 REMARK 465 PRO A 415 REMARK 465 LYS A 416 REMARK 465 GLY A 417 REMARK 465 SER A 418 REMARK 465 GLN A 419 REMARK 465 ASP A 420 REMARK 465 ASP A 421 REMARK 465 ASP A 422 REMARK 465 GLU A 423 REMARK 465 SER A 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 13 OG1 CG2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 GLN A 101 CG CD OE1 NE2 REMARK 470 ASP A 113 CG OD1 OD2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 SER A 163 OG REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 ASP A 282 CG OD1 OD2 REMARK 470 SER A 283 OG REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 ASP A 351 CG OD1 OD2 REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 SER A 355 OG REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 LYS A 382 CG CD CE NZ REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 SER A 425 OG REMARK 470 LEU A 426 CG CD1 CD2 REMARK 470 GLU A 450 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU A 215 O HOH A 501 2.12 REMARK 500 O LYS A 181 O HOH A 501 2.16 REMARK 500 OG SER A 205 O ARG A 304 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 507 O HOH A 618 10575 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 71.83 -116.80 REMARK 500 SER A 70 78.81 -69.58 REMARK 500 SER A 187 -82.82 47.21 REMARK 500 PHE A 202 70.61 56.94 REMARK 500 LYS A 268 76.07 -118.02 REMARK 500 SER A 283 -3.78 74.55 REMARK 500 ASP A 289 76.32 60.48 REMARK 500 PHE A 305 44.37 -104.87 REMARK 500 LEU A 323 -9.47 70.49 REMARK 500 THR A 398 -22.68 -143.96 REMARK 500 ASP A 427 -153.17 -150.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K5U RELATED DB: PDB REMARK 900 RELATED ID: 5K5V RELATED DB: PDB REMARK 900 RELATED ID: 5K60 RELATED DB: PDB REMARK 900 RELATED ID: 5K61 RELATED DB: PDB REMARK 900 RELATED ID: 5K62 RELATED DB: PDB REMARK 900 RELATED ID: 5K63 RELATED DB: PDB REMARK 900 RELATED ID: 5K66 RELATED DB: PDB DBREF 5B62 A 1 457 UNP N1P8Q8 N1P8Q8_YEASC 1 457 DBREF 5B62 B 1 3 PDB 5B62 5B62 1 3 SEQADV 5B62 GLY A -1 UNP N1P8Q8 EXPRESSION TAG SEQADV 5B62 SER A 0 UNP N1P8Q8 EXPRESSION TAG SEQADV 5B62 SER A 187 UNP N1P8Q8 CYS 187 ENGINEERED MUTATION SEQRES 1 A 459 GLY SER MET LEU ILE ASP ALA ILE HIS GLY ALA LYS MET SEQRES 2 A 459 SER THR LYS LEU LEU VAL SER LEU LYS VAL LEU VAL ILE SEQRES 3 A 459 GLN LEU ASN PRO GLN ILE GLY GLN VAL ASP GLN THR ILE SEQRES 4 A 459 LYS ARG THR TRP SER ILE LEU ASP LYS VAL THR LYS SER SEQRES 5 A 459 ALA THR TYR VAL LYS PRO ASP ILE ILE LEU PHE PRO GLU SEQRES 6 A 459 PHE ALA LEU THR GLY TYR SER PHE HIS ALA ARG LYS ASP SEQRES 7 A 459 ILE LEU PRO TYR VAL THR LYS LYS ASP GLU GLY PRO SER SEQRES 8 A 459 PHE GLU LEU ALA LYS SER ILE SER GLU LYS PHE GLN CYS SEQRES 9 A 459 TYR THR ILE ILE GLY TYR PRO GLU GLU ASP ASP GLU GLN SEQRES 10 A 459 LYS LEU TYR ASN SER ALA LEU VAL VAL ASN PRO GLN GLY SEQRES 11 A 459 GLY GLN ILE PHE ASN TYR ARG LYS THR PHE LEU TYR ASP SEQRES 12 A 459 THR GLU MET ASN TRP ASP CYS GLU GLU ASN PRO GLU GLY SEQRES 13 A 459 PHE GLN THR PHE PRO MET ASP PHE SER LYS CYS ALA LYS SEQRES 14 A 459 LEU SER ASN GLU ASP SER TYR ASN ARG ASP VAL THR LEU SEQRES 15 A 459 LYS ALA SER ILE GLY ILE SER MET ASP LEU SER PRO TYR SEQRES 16 A 459 LYS PHE MET ALA PRO PHE ASN HIS PHE GLU PHE SER SER SEQRES 17 A 459 PHE CYS VAL ASP ASN ASN VAL GLU LEU ILE LEU CYS PRO SEQRES 18 A 459 MET ALA TRP LEU ASN SER THR SER ILE THR ASP LYS GLN SEQRES 19 A 459 THR LEU HIS ASN ASN SER LEU LEU GLU ALA ALA LYS ASN SEQRES 20 A 459 LYS ILE ALA PHE ALA LEU LYS GLU GLN GLY LEU PRO LEU SEQRES 21 A 459 ALA GLY SER GLN GLY ILE TYR GLN LEU LYS ILE GLY ASP SEQRES 22 A 459 SER GLN ARG THR PRO ARG VAL PRO SER ASP ASP SER THR SEQRES 23 A 459 SER GLU TYR LYS ASP MET ASP GLU PRO ASP MET SER ASN SEQRES 24 A 459 VAL ASN TYR TRP ILE LEU ARG PHE PHE PRO PHE LEU TYR SEQRES 25 A 459 PHE LYS LEU ARG ILE ASN TRP PHE LYS ASN SER SER LEU SEQRES 26 A 459 ILE GLU SER ILE LEU GLY LYS THR ARG MET PRO LEU ASP SEQRES 27 A 459 HIS GLU TYR TYR LYS ASP GLY LYS HIS LYS GLU ASP THR SEQRES 28 A 459 ILE ASP LEU LEU ASP SER GLU GLU VAL ILE LYS ASP THR SEQRES 29 A 459 VAL LEU GLU LYS THR PHE LEU GLY THR SER LEU GLY GLN SEQRES 30 A 459 PRO TRP LYS PHE GLN GLY LYS ASN ALA ILE LEU VAL LEU SEQRES 31 A 459 ALA ASN ARG CYS GLY THR GLU ASP GLY THR THR ILE PHE SEQRES 32 A 459 ALA GLY SER SER GLY ILE TYR LYS PHE ASN GLY LYS LYS SEQRES 33 A 459 PRO LYS GLY SER GLN ASP ASP ASP GLU SER SER LEU ASP SEQRES 34 A 459 SER LEU ASN GLU SER VAL GLU LEU LEU GLY ASN LEU GLY SEQRES 35 A 459 LYS GLY LEU GLU GLY ALA ILE LEU ARG GLU VAL GLN PHE SEQRES 36 A 459 GLU VAL PHE ARG SEQRES 1 B 3 ASN GLU ALA FORMUL 3 HOH *151(H2 O) HELIX 1 AA1 GLN A 32 LYS A 49 1 18 HELIX 2 AA2 ALA A 73 LEU A 78 1 6 HELIX 3 AA3 PRO A 79 VAL A 81 5 3 HELIX 4 AA4 GLY A 87 GLN A 101 1 15 HELIX 5 AA5 ILE A 186 SER A 191 5 6 HELIX 6 AA6 PRO A 192 MET A 196 5 5 HELIX 7 AA7 PRO A 198 HIS A 201 5 4 HELIX 8 AA8 PHE A 202 ASN A 211 1 10 HELIX 9 AA9 ASP A 230 HIS A 235 1 6 HELIX 10 AB1 ASN A 236 GLU A 253 1 18 HELIX 11 AB2 ASP A 294 ARG A 304 1 11 HELIX 12 AB3 PHE A 305 LEU A 309 5 5 HELIX 13 AB4 LEU A 313 ASN A 320 1 8 HELIX 14 AB5 LEU A 323 LYS A 330 1 8 HELIX 15 AB6 HIS A 337 LYS A 341 5 5 HELIX 16 AB7 LYS A 360 LYS A 366 1 7 SHEET 1 AA1 7 GLN A 130 ARG A 135 0 SHEET 2 AA1 7 LEU A 117 VAL A 124 -1 N VAL A 123 O PHE A 132 SHEET 3 AA1 7 TYR A 103 GLU A 111 -1 N TYR A 108 O SER A 120 SHEET 4 AA1 7 ILE A 58 LEU A 60 1 N ILE A 59 O TYR A 103 SHEET 5 AA1 7 LYS A 14 GLN A 25 1 N ILE A 24 O LEU A 60 SHEET 6 AA1 7 GLU A 444 PHE A 456 -1 O VAL A 455 N LEU A 15 SHEET 7 AA1 7 TYR A 265 ILE A 269 1 N LYS A 268 O LEU A 448 SHEET 1 AA211 GLN A 130 ARG A 135 0 SHEET 2 AA211 LEU A 117 VAL A 124 -1 N VAL A 123 O PHE A 132 SHEET 3 AA211 TYR A 103 GLU A 111 -1 N TYR A 108 O SER A 120 SHEET 4 AA211 ILE A 58 LEU A 60 1 N ILE A 59 O TYR A 103 SHEET 5 AA211 LYS A 14 GLN A 25 1 N ILE A 24 O LEU A 60 SHEET 6 AA211 PHE A 158 LYS A 167 -1 O CYS A 165 N SER A 18 SHEET 7 AA211 ARG A 176 ILE A 184 -1 O VAL A 178 N PHE A 162 SHEET 8 AA211 LEU A 215 MET A 220 1 O LEU A 217 N SER A 183 SHEET 9 AA211 ALA A 384 ASN A 390 1 O ILE A 385 N ILE A 216 SHEET 10 AA211 GLY A 406 PHE A 410 -1 O TYR A 408 N LEU A 386 SHEET 11 AA211 VAL A 433 ASN A 438 -1 O GLU A 434 N LYS A 409 SHEET 1 AA3 2 THR A 367 PHE A 368 0 SHEET 2 AA3 2 THR A 371 SER A 372 -1 O THR A 371 N PHE A 368 SHEET 1 AA4 2 THR A 394 GLU A 395 0 SHEET 2 AA4 2 THR A 399 ILE A 400 -1 O THR A 399 N GLU A 395 CRYST1 133.796 133.796 118.896 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008411 0.00000