HEADER HYDROLASE 01-JUN-16 5B6T TITLE CATALYTIC DOMAIN OF COPRINOPSIS CINEREA GH62 ALPHA-L- TITLE 2 ARABINOFURANOSIDASE COMPLEXED WITH PB COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY 62 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 82-397; COMPND 5 SYNONYM: ALPHA-L-ARABINOFURANOSIDASE; COMPND 6 EC: 3.2.1.55; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPRINOPSIS CINEREA (STRAIN OKAYAMA-7 / 130 / SOURCE 3 ATCC MYA-4618 / FGSC 9003); SOURCE 4 ORGANISM_COMMON: INKY CAP FUNGUS; SOURCE 5 ORGANISM_TAXID: 240176; SOURCE 6 STRAIN: OKAYAMA-7 / 130 / ATCC MYA-4618 / FGSC 9003; SOURCE 7 GENE: CC1G_01577; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS COPRINOPSIS CINEREA, ALPHA-L-ARABINOFURANOSIDASE, ARABINOXYLAN, GH62, KEYWDS 2 HEMICELLULOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TONOZUKA REVDAT 5 08-NOV-23 5B6T 1 LINK REVDAT 4 26-FEB-20 5B6T 1 REMARK REVDAT 3 15-FEB-17 5B6T 1 JRNL REVDAT 2 14-SEP-16 5B6T 1 JRNL REVDAT 1 07-SEP-16 5B6T 0 JRNL AUTH T.TONOZUKA,Y.TANAKA,S.OKUYAMA,T.MIYAZAKI,A.NISHIKAWA, JRNL AUTH 2 M.YOSHIDA JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF JRNL TITL 2 ALPHA-L-ARABINOFURANOSIDASE FROM COPRINOPSIS CINEREA, JRNL TITL 3 CCABF62A, PROVIDES INSIGHTS INTO STRUCTURE-FUNCTION JRNL TITL 4 RELATIONSHIPS IN GLYCOSIDE HYDROLASE FAMILY 62 JRNL REF APPL. BIOCHEM. BIOTECHNOL. V. 181 511 2017 JRNL REFN ISSN 1559-0291 JRNL PMID 27589854 JRNL DOI 10.1007/S12010-016-2227-0 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 84386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4455 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 294 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5230 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4625 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7138 ; 1.507 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10593 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 640 ; 7.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;29.127 ;23.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;11.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 726 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6137 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1382 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2542 ; 0.756 ; 1.048 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2541 ; 0.755 ; 1.048 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3176 ; 1.232 ; 1.571 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3177 ; 1.232 ; 1.571 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2688 ; 1.194 ; 1.126 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2688 ; 1.194 ; 1.126 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3959 ; 1.836 ; 1.649 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6439 ; 3.688 ; 9.374 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6168 ; 3.493 ; 8.940 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5B6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95064 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 321802 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 27.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4N4B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES BUFFER, NABR, PEG 20000, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.88250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 399 REMARK 465 ALA A 400 REMARK 465 LEU A 401 REMARK 465 GLU A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 ALA B 399 REMARK 465 ALA B 400 REMARK 465 LEU B 401 REMARK 465 GLU B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 103 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 164 75.46 63.87 REMARK 500 ASN A 219 45.33 -108.28 REMARK 500 ASP A 224 68.42 65.46 REMARK 500 ASP A 230 -159.05 -114.88 REMARK 500 ASN A 287 49.48 -101.54 REMARK 500 LEU A 319 -88.42 -111.14 REMARK 500 HIS A 346 102.62 -6.69 REMARK 500 ALA B 164 72.81 65.06 REMARK 500 ASN B 182 19.90 -140.00 REMARK 500 ASP B 224 68.58 66.62 REMARK 500 ASP B 230 -161.43 -109.80 REMARK 500 ASP B 241 29.86 47.90 REMARK 500 LEU B 319 -86.59 -106.31 REMARK 500 HIS B 346 104.36 -6.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB A 500 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 OE1 REMARK 620 2 GLU A 276 OE2 47.7 REMARK 620 3 TYR A 380 OH 135.9 89.3 REMARK 620 4 GOL A 502 O2 100.9 98.5 72.5 REMARK 620 5 HOH A 717 O 70.5 118.1 150.0 90.5 REMARK 620 6 HOH A 768 O 97.4 70.9 71.6 142.6 126.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 619 O REMARK 620 2 HOH A 673 O 91.6 REMARK 620 3 HOH A 799 O 86.4 89.0 REMARK 620 4 HOH A 847 O 175.1 84.7 96.6 REMARK 620 5 HOH A 876 O 93.0 175.2 89.7 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 634 O REMARK 620 2 HOH B 639 O 89.7 REMARK 620 3 HOH B 769 O 86.9 86.6 REMARK 620 4 HOH B 833 O 173.8 86.4 97.7 REMARK 620 5 HOH B 836 O 92.3 178.0 93.1 91.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PB A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B6S RELATED DB: PDB DBREF 5B6T A 82 397 UNP A8NI40 A8NI40_COPC7 82 397 DBREF 5B6T B 82 397 UNP A8NI40 A8NI40_COPC7 82 397 SEQADV 5B6T ALA A 398 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T ALA A 399 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T ALA A 400 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T LEU A 401 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T GLU A 402 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS A 403 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS A 404 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS A 405 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS A 406 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS A 407 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS A 408 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T ALA B 398 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T ALA B 399 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T ALA B 400 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T LEU B 401 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T GLU B 402 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS B 403 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS B 404 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS B 405 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS B 406 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS B 407 UNP A8NI40 EXPRESSION TAG SEQADV 5B6T HIS B 408 UNP A8NI40 EXPRESSION TAG SEQRES 1 A 327 LEU PRO SER SER PHE ARG TRP SER SER SER GLY PRO LEU SEQRES 2 A 327 ILE GLY PRO LYS SER ASP SER ARG ARG ILE GLN GLY ILE SEQRES 3 A 327 LYS ASP PRO SER VAL VAL TYR HIS ASP GLY ARG TRP HIS SEQRES 4 A 327 VAL PHE ALA SER THR ALA LYS THR GLU GLY TYR ASN LEU SEQRES 5 A 327 VAL TYR ILE SER PHE THR ASP TRP ALA GLN ALA GLY SER SEQRES 6 A 327 ALA SER PHE TYR TYR LEU ASP GLN ALA PRO LEU GLY THR SEQRES 7 A 327 GLY TYR ARG ALA ALA PRO GLN VAL PHE TYR PHE ALA PRO SEQRES 8 A 327 GLN ARG LEU TRP TYR LEU VAL TYR GLN ASN GLY ASN ALA SEQRES 9 A 327 ALA TYR SER THR ASN PRO ASP ILE ASN ASN PRO ALA GLY SEQRES 10 A 327 TRP THR ALA PRO ARG THR PHE TYR SER GLY MET PRO ALA SEQRES 11 A 327 ILE ILE ARG ASN ASN ILE GLY ASN GLY HIS TRP VAL ASP SEQRES 12 A 327 MET TRP VAL ILE CYS ASP SER SER LEU CYS HIS LEU PHE SEQRES 13 A 327 SER SER ASP ASP ASN GLY HIS LEU TYR ARG SER GLN THR SEQRES 14 A 327 SER LEU SER ASN PHE PRO ASN GLY PHE ASN GLU PRO VAL SEQRES 15 A 327 ILE ALA MET GLN ASP SER ASN LYS ASN ARG LEU PHE GLU SEQRES 16 A 327 ALA ALA ASN VAL TYR ARG ILE ASP GLY SER ASN GLU TYR SEQRES 17 A 327 LEU LEU LEU HIS GLU ALA ILE GLY SER ASP GLY ARG ARG SEQRES 18 A 327 TRP PHE ARG SER TRP THR SER THR SER ILE ALA GLY PRO SEQRES 19 A 327 TRP ARG ALA LEU ALA ASP GLN GLU SER ASN PRO PHE ALA SEQRES 20 A 327 ARG ALA ASN ASN VAL ALA PHE THR GLY ASN ALA TRP THR SEQRES 21 A 327 ARG ASP ILE SER HIS GLY GLU LEU ILE ARG SER GLY ASN SEQRES 22 A 327 ASP GLN THR LEU PRO ILE SER PRO CYS ASN LEU ARG TYR SEQRES 23 A 327 LEU TYR GLN GLY LEU ASP PRO ASN SER GLY GLY ASP TYR SEQRES 24 A 327 ASN SER LEU PRO TRP LYS LEU GLY LEU LEU THR GLN THR SEQRES 25 A 327 ASN SER ALA CYS ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 26 A 327 HIS HIS SEQRES 1 B 327 LEU PRO SER SER PHE ARG TRP SER SER SER GLY PRO LEU SEQRES 2 B 327 ILE GLY PRO LYS SER ASP SER ARG ARG ILE GLN GLY ILE SEQRES 3 B 327 LYS ASP PRO SER VAL VAL TYR HIS ASP GLY ARG TRP HIS SEQRES 4 B 327 VAL PHE ALA SER THR ALA LYS THR GLU GLY TYR ASN LEU SEQRES 5 B 327 VAL TYR ILE SER PHE THR ASP TRP ALA GLN ALA GLY SER SEQRES 6 B 327 ALA SER PHE TYR TYR LEU ASP GLN ALA PRO LEU GLY THR SEQRES 7 B 327 GLY TYR ARG ALA ALA PRO GLN VAL PHE TYR PHE ALA PRO SEQRES 8 B 327 GLN ARG LEU TRP TYR LEU VAL TYR GLN ASN GLY ASN ALA SEQRES 9 B 327 ALA TYR SER THR ASN PRO ASP ILE ASN ASN PRO ALA GLY SEQRES 10 B 327 TRP THR ALA PRO ARG THR PHE TYR SER GLY MET PRO ALA SEQRES 11 B 327 ILE ILE ARG ASN ASN ILE GLY ASN GLY HIS TRP VAL ASP SEQRES 12 B 327 MET TRP VAL ILE CYS ASP SER SER LEU CYS HIS LEU PHE SEQRES 13 B 327 SER SER ASP ASP ASN GLY HIS LEU TYR ARG SER GLN THR SEQRES 14 B 327 SER LEU SER ASN PHE PRO ASN GLY PHE ASN GLU PRO VAL SEQRES 15 B 327 ILE ALA MET GLN ASP SER ASN LYS ASN ARG LEU PHE GLU SEQRES 16 B 327 ALA ALA ASN VAL TYR ARG ILE ASP GLY SER ASN GLU TYR SEQRES 17 B 327 LEU LEU LEU HIS GLU ALA ILE GLY SER ASP GLY ARG ARG SEQRES 18 B 327 TRP PHE ARG SER TRP THR SER THR SER ILE ALA GLY PRO SEQRES 19 B 327 TRP ARG ALA LEU ALA ASP GLN GLU SER ASN PRO PHE ALA SEQRES 20 B 327 ARG ALA ASN ASN VAL ALA PHE THR GLY ASN ALA TRP THR SEQRES 21 B 327 ARG ASP ILE SER HIS GLY GLU LEU ILE ARG SER GLY ASN SEQRES 22 B 327 ASP GLN THR LEU PRO ILE SER PRO CYS ASN LEU ARG TYR SEQRES 23 B 327 LEU TYR GLN GLY LEU ASP PRO ASN SER GLY GLY ASP TYR SEQRES 24 B 327 ASN SER LEU PRO TRP LYS LEU GLY LEU LEU THR GLN THR SEQRES 25 B 327 ASN SER ALA CYS ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 26 B 327 HIS HIS HET PB A 500 1 HET CA A 501 1 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET CA B 501 1 HET GOL B 502 6 HET GOL B 503 6 HETNAM PB LEAD (II) ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PB PB 2+ FORMUL 4 CA 2(CA 2+) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 12 HOH *619(H2 O) HELIX 1 AA1 ASP A 140 ALA A 144 5 5 HELIX 2 AA2 ASP A 153 ALA A 155 5 3 HELIX 3 AA3 ALA A 171 ARG A 174 5 4 HELIX 4 AA4 ASN A 195 TRP A 199 5 5 HELIX 5 AA5 PRO A 210 ILE A 217 1 8 HELIX 6 AA6 ASN A 270 LEU A 274 5 5 HELIX 7 AA7 ARG A 329 ASN A 331 5 3 HELIX 8 AA8 ASP A 379 LEU A 383 5 5 HELIX 9 AA9 ASP B 140 ALA B 144 5 5 HELIX 10 AB1 ASP B 153 ALA B 155 5 3 HELIX 11 AB2 ALA B 171 ARG B 174 5 4 HELIX 12 AB3 ASN B 195 TRP B 199 5 5 HELIX 13 AB4 PRO B 210 ILE B 217 1 8 HELIX 14 AB5 ASN B 270 LEU B 274 5 5 HELIX 15 AB6 ARG B 329 ASN B 331 5 3 HELIX 16 AB7 ASP B 379 LEU B 383 5 5 SHEET 1 AA1 5 VAL A 333 PHE A 335 0 SHEET 2 AA1 5 TRP A 88 SER A 90 1 N SER A 90 O ALA A 334 SHEET 3 AA1 5 LYS A 386 GLN A 392 -1 O THR A 391 N SER A 89 SHEET 4 AA1 5 ARG A 366 GLY A 371 -1 N TYR A 367 O LEU A 390 SHEET 5 AA1 5 SER A 345 LEU A 349 -1 N GLU A 348 O LEU A 368 SHEET 1 AA2 4 GLY A 106 HIS A 115 0 SHEET 2 AA2 4 ARG A 118 LYS A 127 -1 O HIS A 120 N VAL A 113 SHEET 3 AA2 4 GLY A 130 PHE A 138 -1 O PHE A 138 N TRP A 119 SHEET 4 AA2 4 PHE A 149 TYR A 151 -1 O TYR A 150 N TYR A 135 SHEET 1 AA3 4 ALA A 163 PHE A 170 0 SHEET 2 AA3 4 LEU A 175 GLN A 181 -1 O TYR A 177 N PHE A 168 SHEET 3 AA3 4 ALA A 185 ASN A 190 -1 O ALA A 186 N TYR A 180 SHEET 4 AA3 4 ARG A 203 THR A 204 -1 O ARG A 203 N TYR A 187 SHEET 1 AA4 4 VAL A 223 CYS A 229 0 SHEET 2 AA4 4 LEU A 233 SER A 239 -1 O PHE A 237 N TRP A 226 SHEET 3 AA4 4 HIS A 244 SER A 251 -1 O TYR A 246 N SER A 238 SHEET 4 AA4 4 VAL A 263 GLN A 267 -1 O MET A 266 N LEU A 245 SHEET 1 AA5 5 ARG A 317 ALA A 318 0 SHEET 2 AA5 5 ARG A 302 SER A 309 -1 N THR A 308 O ARG A 317 SHEET 3 AA5 5 GLU A 288 ILE A 296 -1 N TYR A 289 O SER A 309 SHEET 4 AA5 5 GLU A 276 ILE A 283 -1 N ASN A 279 O LEU A 292 SHEET 5 AA5 5 PRO A 359 ILE A 360 1 O ILE A 360 N ARG A 282 SHEET 1 AA6 5 VAL B 333 PHE B 335 0 SHEET 2 AA6 5 TRP B 88 SER B 90 1 N SER B 90 O ALA B 334 SHEET 3 AA6 5 LYS B 386 GLN B 392 -1 O THR B 391 N SER B 89 SHEET 4 AA6 5 ARG B 366 GLY B 371 -1 N GLY B 371 O LYS B 386 SHEET 5 AA6 5 SER B 345 LEU B 349 -1 N GLU B 348 O LEU B 368 SHEET 1 AA7 4 GLY B 106 HIS B 115 0 SHEET 2 AA7 4 ARG B 118 LYS B 127 -1 O PHE B 122 N SER B 111 SHEET 3 AA7 4 GLY B 130 PHE B 138 -1 O ILE B 136 N VAL B 121 SHEET 4 AA7 4 PHE B 149 TYR B 151 -1 O TYR B 150 N TYR B 135 SHEET 1 AA8 4 ALA B 163 PHE B 170 0 SHEET 2 AA8 4 LEU B 175 GLN B 181 -1 O TYR B 177 N PHE B 168 SHEET 3 AA8 4 ALA B 185 ASN B 190 -1 O ALA B 186 N TYR B 180 SHEET 4 AA8 4 ARG B 203 THR B 204 -1 O ARG B 203 N TYR B 187 SHEET 1 AA9 4 VAL B 223 CYS B 229 0 SHEET 2 AA9 4 LEU B 233 SER B 239 -1 O PHE B 237 N TRP B 226 SHEET 3 AA9 4 HIS B 244 SER B 251 -1 O THR B 250 N CYS B 234 SHEET 4 AA9 4 VAL B 263 GLN B 267 -1 O ALA B 265 N LEU B 245 SHEET 1 AB1 5 ARG B 317 ALA B 318 0 SHEET 2 AB1 5 ARG B 302 SER B 309 -1 N THR B 308 O ARG B 317 SHEET 3 AB1 5 TYR B 289 ILE B 296 -1 N ALA B 295 O TRP B 303 SHEET 4 AB1 5 GLU B 276 ILE B 283 -1 N ASN B 279 O LEU B 292 SHEET 5 AB1 5 PRO B 359 ILE B 360 1 O ILE B 360 N ARG B 282 SHEET 1 AB2 2 ASP B 321 GLN B 322 0 SHEET 2 AB2 2 ASN B 325 PRO B 326 -1 O ASN B 325 N GLN B 322 SSBOND 1 CYS A 229 CYS A 234 1555 1555 2.77 SSBOND 2 CYS A 363 CYS A 397 1555 1555 1.99 SSBOND 3 CYS B 229 CYS B 234 1555 1555 2.78 SSBOND 4 CYS B 363 CYS B 397 1555 1555 2.00 LINK OE1 GLU A 276 PB PB A 500 1555 1555 2.61 LINK OE2 GLU A 276 PB PB A 500 1555 1555 2.68 LINK OH TYR A 380 PB PB A 500 1555 1555 3.27 LINK PB PB A 500 O2 GOL A 502 1555 1555 2.56 LINK PB PB A 500 O HOH A 717 1555 1555 2.58 LINK PB PB A 500 O HOH A 768 1555 1555 2.16 LINK CA CA A 501 O HOH A 619 1555 1555 2.17 LINK CA CA A 501 O HOH A 673 1555 1555 2.09 LINK CA CA A 501 O HOH A 799 1555 1555 2.08 LINK CA CA A 501 O HOH A 847 1555 1555 2.14 LINK CA CA A 501 O HOH A 876 1555 1555 2.06 LINK CA CA B 501 O HOH B 634 1555 1555 2.18 LINK CA CA B 501 O HOH B 639 1555 1555 2.10 LINK CA CA B 501 O HOH B 769 1555 1555 2.08 LINK CA CA B 501 O HOH B 833 1555 1555 2.14 LINK CA CA B 501 O HOH B 836 1555 1555 2.04 CISPEP 1 PHE A 255 PRO A 256 0 7.63 CISPEP 2 GLY A 314 PRO A 315 0 2.66 CISPEP 3 PHE B 255 PRO B 256 0 7.22 CISPEP 4 GLY B 314 PRO B 315 0 5.76 SITE 1 AC1 5 GLU A 276 TYR A 380 GOL A 502 HOH A 717 SITE 2 AC1 5 HOH A 768 SITE 1 AC2 6 HIS A 346 HOH A 619 HOH A 673 HOH A 799 SITE 2 AC2 6 HOH A 847 HOH A 876 SITE 1 AC3 10 LYS A 108 ASP A 109 TYR A 131 GLN A 181 SITE 2 AC3 10 VAL A 223 ASP A 224 TYR A 380 PB A 500 SITE 3 AC3 10 HOH A 631 HOH A 665 SITE 1 AC4 7 PHE A 149 TYR A 150 TYR A 151 HOH A 644 SITE 2 AC4 7 HOH A 700 ILE B 212 ASN B 215 SITE 1 AC5 5 TYR A 135 SER A 137 SER A 148 HOH A 610 SITE 2 AC5 5 HOH A 830 SITE 1 AC6 4 ARG A 214 ASN A 215 HOH A 618 HOH A 649 SITE 1 AC7 6 HIS B 346 HOH B 634 HOH B 639 HOH B 769 SITE 2 AC7 6 HOH B 833 HOH B 836 SITE 1 AC8 9 LYS B 108 ASP B 109 TYR B 131 GLN B 181 SITE 2 AC8 9 VAL B 223 ASP B 224 TYR B 380 HOH B 622 SITE 3 AC8 9 HOH B 670 SITE 1 AC9 12 ARG A 87 ALA A 330 ASN A 331 VAL A 333 SITE 2 AC9 12 ALA A 334 HOH A 638 ASP B 153 GLN B 154 SITE 3 AC9 12 ALA B 155 GLY B 158 THR B 159 HOH B 714 CRYST1 47.854 77.765 74.458 90.00 93.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020897 0.000000 0.001098 0.00000 SCALE2 0.000000 0.012859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013449 0.00000