HEADER TRANSCRIPTION 07-JUN-16 5B7H TITLE OXYR2 REGULATORY DOMAIN C206S MUTANT FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 86-301; COMPND 5 SYNONYM: OXYR2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 STRAIN: MO6-24/O; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYSR-TYPE TRANSCRIPTION REGULATOR, LTTR, OXYR, H2O2, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR I.JO,N.-C.HA REVDAT 2 08-NOV-23 5B7H 1 REMARK REVDAT 1 07-JUN-17 5B7H 0 JRNL AUTH I.JO,N.-C.HA JRNL TITL STRUCTURAL BASIS FOR HYPERSENSITIVITY OF OXYR2 FROM VIBRIO JRNL TITL 2 VULNIFICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 78963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8093 - 4.5131 1.00 2852 155 0.1539 0.1663 REMARK 3 2 4.5131 - 3.5891 1.00 2776 119 0.1333 0.1717 REMARK 3 3 3.5891 - 3.1375 1.00 2724 145 0.1452 0.1704 REMARK 3 4 3.1375 - 2.8515 1.00 2708 157 0.1586 0.1915 REMARK 3 5 2.8515 - 2.6477 1.00 2690 141 0.1659 0.1936 REMARK 3 6 2.6477 - 2.4919 1.00 2703 140 0.1617 0.2089 REMARK 3 7 2.4919 - 2.3673 1.00 2687 139 0.1558 0.1708 REMARK 3 8 2.3673 - 2.2644 1.00 2677 144 0.1543 0.2005 REMARK 3 9 2.2644 - 2.1773 1.00 2685 139 0.1525 0.1911 REMARK 3 10 2.1773 - 2.1023 1.00 2669 151 0.1532 0.2073 REMARK 3 11 2.1023 - 2.0366 1.00 2655 156 0.1533 0.2043 REMARK 3 12 2.0366 - 1.9785 1.00 2678 157 0.1613 0.1824 REMARK 3 13 1.9785 - 1.9264 1.00 2664 140 0.1612 0.2014 REMARK 3 14 1.9264 - 1.8795 1.00 2670 144 0.1615 0.2006 REMARK 3 15 1.8795 - 1.8368 1.00 2662 129 0.1575 0.1920 REMARK 3 16 1.8368 - 1.7977 1.00 2670 152 0.1617 0.2031 REMARK 3 17 1.7977 - 1.7618 1.00 2668 122 0.1656 0.1859 REMARK 3 18 1.7618 - 1.7285 1.00 2661 132 0.1685 0.1975 REMARK 3 19 1.7285 - 1.6977 1.00 2642 138 0.1730 0.2177 REMARK 3 20 1.6977 - 1.6689 1.00 2720 127 0.1738 0.1979 REMARK 3 21 1.6689 - 1.6420 1.00 2656 135 0.1839 0.2283 REMARK 3 22 1.6420 - 1.6168 1.00 2618 149 0.1839 0.2095 REMARK 3 23 1.6168 - 1.5930 1.00 2636 161 0.1939 0.2380 REMARK 3 24 1.5930 - 1.5706 1.00 2675 139 0.2127 0.2417 REMARK 3 25 1.5706 - 1.5493 1.00 2657 144 0.2136 0.2515 REMARK 3 26 1.5493 - 1.5292 1.00 2641 137 0.2210 0.2627 REMARK 3 27 1.5292 - 1.5101 1.00 2681 126 0.2323 0.2412 REMARK 3 28 1.5101 - 1.4919 0.98 2572 148 0.2554 0.2729 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3548 REMARK 3 ANGLE : 1.339 4851 REMARK 3 CHIRALITY : 0.113 575 REMARK 3 PLANARITY : 0.008 641 REMARK 3 DIHEDRAL : 6.876 2511 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9302 -6.3570 17.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1829 REMARK 3 T33: 0.1529 T12: -0.0316 REMARK 3 T13: -0.0093 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 5.6192 L22: 1.0253 REMARK 3 L33: 0.4746 L12: -2.4297 REMARK 3 L13: 1.5102 L23: -0.3846 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: 0.5589 S13: 0.2214 REMARK 3 S21: -0.0039 S22: -0.1805 S23: -0.2542 REMARK 3 S31: -0.0168 S32: 0.2652 S33: 0.0434 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5685 -6.0964 13.1787 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.0646 REMARK 3 T33: 0.0640 T12: -0.0006 REMARK 3 T13: -0.0054 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.2016 L22: 0.3777 REMARK 3 L33: 0.8739 L12: 0.0187 REMARK 3 L13: -0.2637 L23: 0.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0107 S13: -0.0264 REMARK 3 S21: -0.0696 S22: -0.0078 S23: -0.0209 REMARK 3 S31: -0.0612 S32: 0.0138 S33: 0.0229 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0403 -4.9888 11.2306 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1519 REMARK 3 T33: 0.1243 T12: 0.0282 REMARK 3 T13: -0.0451 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.9317 L22: 1.3933 REMARK 3 L33: 3.2958 L12: -0.9795 REMARK 3 L13: 0.0059 L23: -0.2765 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: 0.2294 S13: -0.1609 REMARK 3 S21: -0.1304 S22: -0.0184 S23: 0.2409 REMARK 3 S31: -0.2246 S32: -0.3743 S33: 0.0527 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0016 -11.1485 11.9963 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.0735 REMARK 3 T33: 0.0524 T12: -0.0038 REMARK 3 T13: -0.0141 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.0146 L22: 0.6999 REMARK 3 L33: 0.7977 L12: 0.1364 REMARK 3 L13: -0.5215 L23: -0.2316 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: 0.1120 S13: -0.1237 REMARK 3 S21: -0.0960 S22: -0.0063 S23: -0.0364 REMARK 3 S31: 0.0243 S32: -0.0637 S33: 0.0557 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1066 -41.8769 17.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.2416 REMARK 3 T33: 0.2372 T12: -0.0220 REMARK 3 T13: 0.0154 T23: -0.0609 REMARK 3 L TENSOR REMARK 3 L11: 3.8819 L22: 0.5157 REMARK 3 L33: -0.0611 L12: -1.8005 REMARK 3 L13: -0.6779 L23: 0.0493 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.6686 S13: -0.4346 REMARK 3 S21: 0.0109 S22: -0.0813 S23: 0.2489 REMARK 3 S31: -0.0329 S32: -0.1979 S33: 0.0301 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0842 -41.5643 18.0296 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.0874 REMARK 3 T33: 0.0504 T12: -0.0230 REMARK 3 T13: -0.0006 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.7523 L22: 2.2124 REMARK 3 L33: 1.6458 L12: -0.2449 REMARK 3 L13: -0.2136 L23: 0.7736 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: 0.0237 S13: 0.0341 REMARK 3 S21: -0.0331 S22: -0.0062 S23: 0.0720 REMARK 3 S31: 0.0396 S32: -0.1406 S33: 0.0320 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4051 -43.4520 9.9972 REMARK 3 T TENSOR REMARK 3 T11: 0.1063 T22: 0.0866 REMARK 3 T33: 0.0715 T12: 0.0002 REMARK 3 T13: 0.0147 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.8814 L22: 1.9525 REMARK 3 L33: 0.7313 L12: 1.8127 REMARK 3 L13: -0.2635 L23: -0.1824 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: 0.1126 S13: -0.0952 REMARK 3 S21: -0.1007 S22: 0.0225 S23: -0.0432 REMARK 3 S31: 0.1681 S32: -0.0054 S33: -0.0079 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2730 -43.1685 9.4473 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.1453 REMARK 3 T33: 0.1259 T12: 0.0573 REMARK 3 T13: 0.0493 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.3404 L22: 0.6133 REMARK 3 L33: 2.5812 L12: -0.4449 REMARK 3 L13: -0.4987 L23: 0.2507 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: 0.1889 S13: 0.0081 REMARK 3 S21: -0.0911 S22: -0.0220 S23: -0.1123 REMARK 3 S31: 0.3596 S32: 0.2944 S33: 0.0606 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7145 -33.7215 14.7811 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.0758 REMARK 3 T33: 0.0792 T12: 0.0024 REMARK 3 T13: 0.0183 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.9428 L22: 2.0157 REMARK 3 L33: 1.8744 L12: -0.1367 REMARK 3 L13: -0.1266 L23: 0.3445 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.1752 S13: 0.1014 REMARK 3 S21: -0.1241 S22: -0.0270 S23: -0.0021 REMARK 3 S31: 0.0166 S32: 0.0084 S33: 0.0353 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 273 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2306 -41.7803 8.1587 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.1211 REMARK 3 T33: 0.0957 T12: -0.0329 REMARK 3 T13: -0.0196 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.8545 L22: 3.2892 REMARK 3 L33: 1.4223 L12: 1.1697 REMARK 3 L13: -0.2301 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.2711 S13: 0.1469 REMARK 3 S21: -0.0894 S22: -0.0204 S23: 0.4558 REMARK 3 S31: 0.0916 S32: -0.2173 S33: -0.0276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5B6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CITRATE (PH 5.6), 15% PEG 4000, 2MM TCEP, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.45700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.45700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.35150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.79000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.35150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.79000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.45700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.35150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.79000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.45700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.35150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.79000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.45700 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.45700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 LEU A 90 REMARK 465 CYS A 91 REMARK 465 GLN A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 94 REMARK 465 GLY B 88 REMARK 465 SER B 89 REMARK 465 LEU B 90 REMARK 465 CYS B 91 REMARK 465 GLN B 92 REMARK 465 GLY B 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 261 O HOH A 501 1.96 REMARK 500 O PRO A 268 O HOH A 502 2.02 REMARK 500 O HOH A 529 O HOH A 701 2.03 REMARK 500 OD1 ASN B 261 O HOH B 501 2.04 REMARK 500 OE1 GLU B 119 O HOH B 502 2.04 REMARK 500 O HOH B 672 O HOH B 783 2.04 REMARK 500 O HOH A 538 O HOH A 676 2.10 REMARK 500 O HOH A 551 O HOH A 693 2.11 REMARK 500 O GLN A 271 O HOH A 503 2.12 REMARK 500 O PRO B 268 O HOH B 503 2.12 REMARK 500 O HOH B 562 O HOH B 766 2.13 REMARK 500 O HOH B 518 O HOH B 660 2.13 REMARK 500 OG SER B 177 O HOH B 504 2.14 REMARK 500 O HOH A 682 O HOH A 735 2.15 REMARK 500 OG SER A 177 O HOH A 504 2.15 REMARK 500 O HOH A 506 O HOH A 688 2.16 REMARK 500 OE1 GLU A 295 O HOH A 505 2.16 REMARK 500 O HOH A 609 O HOH A 646 2.17 REMARK 500 OD1 ASP B 160 O HOH B 505 2.17 REMARK 500 O HOH A 558 O HOH A 705 2.17 REMARK 500 NE2 GLN B 292 O HOH B 506 2.17 REMARK 500 OE1 GLU B 299 O HOH B 507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH B 568 3555 1.88 REMARK 500 O HOH A 764 O HOH A 768 4555 2.11 REMARK 500 ND2 ASN B 261 O HOH A 501 3555 2.12 REMARK 500 O HOH A 651 O HOH B 717 5555 2.14 REMARK 500 ND2 ASN A 261 O HOH B 501 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 163 CB GLU A 163 CG -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 274 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 96 30.49 -90.16 REMARK 500 PHE A 111 -70.34 -105.36 REMARK 500 PHE A 111 -70.09 -105.36 REMARK 500 PHE B 111 -71.74 -106.59 REMARK 500 ASP B 160 59.40 39.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B6U RELATED DB: PDB REMARK 900 RELATED ID: 5B70 RELATED DB: PDB REMARK 900 RELATED ID: 5B7D RELATED DB: PDB DBREF1 5B7H A 86 301 UNP A0A087I947_VIBVL DBREF2 5B7H A A0A087I947 86 301 DBREF1 5B7H B 86 301 UNP A0A087I947_VIBVL DBREF2 5B7H B A0A087I947 86 301 SEQADV 5B7H GLY A 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5B7H ALA A 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5B7H MET A 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5B7H SER A 206 UNP A0A087I94 CYS 206 ENGINEERED MUTATION SEQADV 5B7H GLY B 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5B7H ALA B 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5B7H MET B 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5B7H SER B 206 UNP A0A087I94 CYS 206 ENGINEERED MUTATION SEQRES 1 A 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 A 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 A 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 A 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 A 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 A 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 A 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 A 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 A 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 A 219 LEU LEU GLU LYS GLU HIS SER LEU THR GLU HIS ALA VAL SEQRES 11 A 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 A 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 A 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 A 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 A 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 A 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 A 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU SEQRES 1 B 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 B 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 B 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 B 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 B 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 B 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 B 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 B 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 B 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 B 219 LEU LEU GLU LYS GLU HIS SER LEU THR GLU HIS ALA VAL SEQRES 11 B 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 B 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 B 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 B 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 B 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 B 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 B 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 B 401 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *599(H2 O) HELIX 1 AA1 ILE A 108 PHE A 124 1 17 HELIX 2 AA2 THR A 135 HIS A 145 1 11 HELIX 3 AA3 HIS A 179 ALA A 181 5 3 HELIX 4 AA4 LYS A 189 LEU A 193 5 5 HELIX 5 AA5 HIS A 205 CYS A 215 1 11 HELIX 6 AA6 ASP A 219 ILE A 223 5 5 HELIX 7 AA7 SER A 230 ASN A 240 1 11 HELIX 8 AA8 GLN A 249 HIS A 254 1 6 HELIX 9 AA9 ARG A 286 LEU A 300 1 15 HELIX 10 AB1 ILE B 108 PHE B 124 1 17 HELIX 11 AB2 THR B 135 HIS B 145 1 11 HELIX 12 AB3 HIS B 179 ALA B 181 5 3 HELIX 13 AB4 LYS B 189 LEU B 193 5 5 HELIX 14 AB5 HIS B 205 CYS B 215 1 11 HELIX 15 AB6 ASP B 219 ILE B 223 5 5 HELIX 16 AB7 SER B 230 ASN B 240 1 11 HELIX 17 AB8 GLN B 249 HIS B 254 1 6 HELIX 18 AB9 ARG B 286 LEU B 300 1 15 SHEET 1 AA1 6 LEU A 127 GLU A 133 0 SHEET 2 AA1 6 GLY A 98 CYS A 104 1 N GLY A 98 O ASN A 128 SHEET 3 AA1 6 VAL A 150 LEU A 155 1 O ILE A 152 N GLY A 103 SHEET 4 AA1 6 TYR A 273 TRP A 280 -1 O GLY A 277 N LEU A 153 SHEET 5 AA1 6 GLU A 163 SER A 177 -1 N VAL A 167 O ILE A 276 SHEET 6 AA1 6 THR A 245 PRO A 248 -1 O ILE A 247 N LYS A 173 SHEET 1 AA2 6 LEU A 127 GLU A 133 0 SHEET 2 AA2 6 GLY A 98 CYS A 104 1 N GLY A 98 O ASN A 128 SHEET 3 AA2 6 VAL A 150 LEU A 155 1 O ILE A 152 N GLY A 103 SHEET 4 AA2 6 TYR A 273 TRP A 280 -1 O GLY A 277 N LEU A 153 SHEET 5 AA2 6 GLU A 163 SER A 177 -1 N VAL A 167 O ILE A 276 SHEET 6 AA2 6 LEU A 262 ILE A 265 -1 O VAL A 263 N ILE A 176 SHEET 1 AA3 6 LEU B 127 GLU B 133 0 SHEET 2 AA3 6 GLY B 98 CYS B 104 1 N GLY B 98 O ASN B 128 SHEET 3 AA3 6 VAL B 150 LEU B 155 1 O ILE B 152 N GLY B 103 SHEET 4 AA3 6 TYR B 273 TRP B 280 -1 O GLY B 277 N LEU B 153 SHEET 5 AA3 6 GLU B 163 SER B 177 -1 N ASP B 170 O ARG B 274 SHEET 6 AA3 6 THR B 245 PRO B 248 -1 O ILE B 247 N LYS B 173 SHEET 1 AA4 6 LEU B 127 GLU B 133 0 SHEET 2 AA4 6 GLY B 98 CYS B 104 1 N GLY B 98 O ASN B 128 SHEET 3 AA4 6 VAL B 150 LEU B 155 1 O ILE B 152 N GLY B 103 SHEET 4 AA4 6 TYR B 273 TRP B 280 -1 O GLY B 277 N LEU B 153 SHEET 5 AA4 6 GLU B 163 SER B 177 -1 N ASP B 170 O ARG B 274 SHEET 6 AA4 6 LEU B 262 ILE B 265 -1 O ILE B 265 N MET B 174 CISPEP 1 LEU A 155 PRO A 156 0 3.28 CISPEP 2 VAL A 186 PRO A 187 0 3.75 CISPEP 3 LEU B 155 PRO B 156 0 2.43 CISPEP 4 VAL B 186 PRO B 187 0 -1.60 SITE 1 AC1 8 ILE A 105 PRO A 106 THR A 107 HIS A 205 SITE 2 AC1 8 SER A 206 LEU A 207 HOH A 508 HOH A 673 SITE 1 AC2 8 ARG A 281 SER A 284 SER A 285 HOH A 515 SITE 2 AC2 8 HOH A 566 HOH A 692 ARG B 144 HIS B 145 SITE 1 AC3 7 ILE B 105 PRO B 106 THR B 107 HIS B 205 SITE 2 AC3 7 SER B 206 LEU B 207 HOH B 508 CRYST1 72.703 137.580 96.914 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010318 0.00000