data_5B7J # _entry.id 5B7J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5B7J pdb_00005b7j 10.2210/pdb5b7j/pdb WWPDB D_1300000670 ? ? BMRB 36001 ? 10.13018/BMR36001 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-02-22 2 'Structure model' 1 1 2017-05-24 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5B7J _pdbx_database_status.recvd_initial_deposition_date 2016-06-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 36001 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jin, C.' 1 ? 'Hu, Y.' 2 ? 'Ding, J.' 3 ? 'Zhang, Y.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 292 _citation.language ? _citation.page_first 6056 _citation.page_last 6075 _citation.title ;Sap1 is a replication-initiation factor essential for the assembly of pre-replicative complex in the fission yeast Schizosaccharomyces pombe ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.M116.767806 _citation.pdbx_database_id_PubMed 28223353 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guan, L.' 1 ? primary 'He, P.' 2 ? primary 'Yang, F.' 3 ? primary 'Zhang, Y.' 4 ? primary 'Hu, Y.' 5 ? primary 'Ding, J.' 6 ? primary 'Hua, Y.' 7 ? primary 'Zhang, Y.' 8 ? primary 'Ye, Q.' 9 ? primary 'Hu, J.' 10 ? primary 'Wang, T.' 11 ? primary 'Jin, C.' 12 ? primary 'Kong, D.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Switch-activating protein 1' 13248.225 1 ? ? 'UNP residues 25-135' ? 2 polymer syn ;DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*AP*TP*AP*TP*T)-3') ; 3638.432 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*AP*TP*AP*TP*TP*GP*TP*TP*TP*TP*G)-3') ; 3682.424 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AKAQRTHLSLEEKIKLMRLVVRHKHELVDRKTSEFYAKIARIGYEDEGLAIHTESACRNQIISIMRVYEQRLAHRQPGMK TTPEEDELDQLCDEWKARLSELQQYREKFLV ; ;AKAQRTHLSLEEKIKLMRLVVRHKHELVDRKTSEFYAKIARIGYEDEGLAIHTESACRNQIISIMRVYEQRLAHRQPGMK TTPEEDELDQLCDEWKARLSELQQYREKFLV ; A ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DA)(DA)(DA)(DC)(DA)(DA)(DT)(DA)(DT)(DT)' CAAAACAATATT B ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DA)(DT)(DT)(DG)(DT)(DT)(DT)(DT)(DG)' AATATTGTTTTG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 ALA n 1 4 GLN n 1 5 ARG n 1 6 THR n 1 7 HIS n 1 8 LEU n 1 9 SER n 1 10 LEU n 1 11 GLU n 1 12 GLU n 1 13 LYS n 1 14 ILE n 1 15 LYS n 1 16 LEU n 1 17 MET n 1 18 ARG n 1 19 LEU n 1 20 VAL n 1 21 VAL n 1 22 ARG n 1 23 HIS n 1 24 LYS n 1 25 HIS n 1 26 GLU n 1 27 LEU n 1 28 VAL n 1 29 ASP n 1 30 ARG n 1 31 LYS n 1 32 THR n 1 33 SER n 1 34 GLU n 1 35 PHE n 1 36 TYR n 1 37 ALA n 1 38 LYS n 1 39 ILE n 1 40 ALA n 1 41 ARG n 1 42 ILE n 1 43 GLY n 1 44 TYR n 1 45 GLU n 1 46 ASP n 1 47 GLU n 1 48 GLY n 1 49 LEU n 1 50 ALA n 1 51 ILE n 1 52 HIS n 1 53 THR n 1 54 GLU n 1 55 SER n 1 56 ALA n 1 57 CYS n 1 58 ARG n 1 59 ASN n 1 60 GLN n 1 61 ILE n 1 62 ILE n 1 63 SER n 1 64 ILE n 1 65 MET n 1 66 ARG n 1 67 VAL n 1 68 TYR n 1 69 GLU n 1 70 GLN n 1 71 ARG n 1 72 LEU n 1 73 ALA n 1 74 HIS n 1 75 ARG n 1 76 GLN n 1 77 PRO n 1 78 GLY n 1 79 MET n 1 80 LYS n 1 81 THR n 1 82 THR n 1 83 PRO n 1 84 GLU n 1 85 GLU n 1 86 ASP n 1 87 GLU n 1 88 LEU n 1 89 ASP n 1 90 GLN n 1 91 LEU n 1 92 CYS n 1 93 ASP n 1 94 GLU n 1 95 TRP n 1 96 LYS n 1 97 ALA n 1 98 ARG n 1 99 LEU n 1 100 SER n 1 101 GLU n 1 102 LEU n 1 103 GLN n 1 104 GLN n 1 105 TYR n 1 106 ARG n 1 107 GLU n 1 108 LYS n 1 109 PHE n 1 110 LEU n 1 111 VAL n 2 1 DC n 2 2 DA n 2 3 DA n 2 4 DA n 2 5 DA n 2 6 DC n 2 7 DA n 2 8 DA n 2 9 DT n 2 10 DA n 2 11 DT n 2 12 DT n 3 1 DA n 3 2 DA n 3 3 DT n 3 4 DA n 3 5 DT n 3 6 DT n 3 7 DG n 3 8 DT n 3 9 DT n 3 10 DT n 3 11 DT n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 111 _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'sap1, SPCC1672.02c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '972 / ATCC 24843' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe (strain 972 / ATCC 24843)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'Schizosaccharomyces pombe' ? 4896 ? 3 1 sample 1 12 'Schizosaccharomyces pombe' ? 4896 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 25 25 ALA ALA A . n A 1 2 LYS 2 26 26 LYS LYS A . n A 1 3 ALA 3 27 27 ALA ALA A . n A 1 4 GLN 4 28 28 GLN GLN A . n A 1 5 ARG 5 29 29 ARG ARG A . n A 1 6 THR 6 30 30 THR THR A . n A 1 7 HIS 7 31 31 HIS HIS A . n A 1 8 LEU 8 32 32 LEU LEU A . n A 1 9 SER 9 33 33 SER SER A . n A 1 10 LEU 10 34 34 LEU LEU A . n A 1 11 GLU 11 35 35 GLU GLU A . n A 1 12 GLU 12 36 36 GLU GLU A . n A 1 13 LYS 13 37 37 LYS LYS A . n A 1 14 ILE 14 38 38 ILE ILE A . n A 1 15 LYS 15 39 39 LYS LYS A . n A 1 16 LEU 16 40 40 LEU LEU A . n A 1 17 MET 17 41 41 MET MET A . n A 1 18 ARG 18 42 42 ARG ARG A . n A 1 19 LEU 19 43 43 LEU LEU A . n A 1 20 VAL 20 44 44 VAL VAL A . n A 1 21 VAL 21 45 45 VAL VAL A . n A 1 22 ARG 22 46 46 ARG ARG A . n A 1 23 HIS 23 47 47 HIS HIS A . n A 1 24 LYS 24 48 48 LYS LYS A . n A 1 25 HIS 25 49 49 HIS HIS A . n A 1 26 GLU 26 50 50 GLU GLU A . n A 1 27 LEU 27 51 51 LEU LEU A . n A 1 28 VAL 28 52 52 VAL VAL A . n A 1 29 ASP 29 53 53 ASP ASP A . n A 1 30 ARG 30 54 54 ARG ARG A . n A 1 31 LYS 31 55 55 LYS LYS A . n A 1 32 THR 32 56 56 THR THR A . n A 1 33 SER 33 57 57 SER SER A . n A 1 34 GLU 34 58 58 GLU GLU A . n A 1 35 PHE 35 59 59 PHE PHE A . n A 1 36 TYR 36 60 60 TYR TYR A . n A 1 37 ALA 37 61 61 ALA ALA A . n A 1 38 LYS 38 62 62 LYS LYS A . n A 1 39 ILE 39 63 63 ILE ILE A . n A 1 40 ALA 40 64 64 ALA ALA A . n A 1 41 ARG 41 65 65 ARG ARG A . n A 1 42 ILE 42 66 66 ILE ILE A . n A 1 43 GLY 43 67 67 GLY GLY A . n A 1 44 TYR 44 68 68 TYR TYR A . n A 1 45 GLU 45 69 69 GLU GLU A . n A 1 46 ASP 46 70 70 ASP ASP A . n A 1 47 GLU 47 71 71 GLU GLU A . n A 1 48 GLY 48 72 72 GLY GLY A . n A 1 49 LEU 49 73 73 LEU LEU A . n A 1 50 ALA 50 74 74 ALA ALA A . n A 1 51 ILE 51 75 75 ILE ILE A . n A 1 52 HIS 52 76 76 HIS HIS A . n A 1 53 THR 53 77 77 THR THR A . n A 1 54 GLU 54 78 78 GLU GLU A . n A 1 55 SER 55 79 79 SER SER A . n A 1 56 ALA 56 80 80 ALA ALA A . n A 1 57 CYS 57 81 81 CYS CYS A . n A 1 58 ARG 58 82 82 ARG ARG A . n A 1 59 ASN 59 83 83 ASN ASN A . n A 1 60 GLN 60 84 84 GLN GLN A . n A 1 61 ILE 61 85 85 ILE ILE A . n A 1 62 ILE 62 86 86 ILE ILE A . n A 1 63 SER 63 87 87 SER SER A . n A 1 64 ILE 64 88 88 ILE ILE A . n A 1 65 MET 65 89 89 MET MET A . n A 1 66 ARG 66 90 90 ARG ARG A . n A 1 67 VAL 67 91 91 VAL VAL A . n A 1 68 TYR 68 92 92 TYR TYR A . n A 1 69 GLU 69 93 93 GLU GLU A . n A 1 70 GLN 70 94 94 GLN GLN A . n A 1 71 ARG 71 95 95 ARG ARG A . n A 1 72 LEU 72 96 96 LEU LEU A . n A 1 73 ALA 73 97 97 ALA ALA A . n A 1 74 HIS 74 98 98 HIS HIS A . n A 1 75 ARG 75 99 99 ARG ARG A . n A 1 76 GLN 76 100 100 GLN GLN A . n A 1 77 PRO 77 101 101 PRO PRO A . n A 1 78 GLY 78 102 102 GLY GLY A . n A 1 79 MET 79 103 103 MET MET A . n A 1 80 LYS 80 104 104 LYS LYS A . n A 1 81 THR 81 105 105 THR THR A . n A 1 82 THR 82 106 106 THR THR A . n A 1 83 PRO 83 107 107 PRO PRO A . n A 1 84 GLU 84 108 108 GLU GLU A . n A 1 85 GLU 85 109 109 GLU GLU A . n A 1 86 ASP 86 110 110 ASP ASP A . n A 1 87 GLU 87 111 111 GLU GLU A . n A 1 88 LEU 88 112 112 LEU LEU A . n A 1 89 ASP 89 113 113 ASP ASP A . n A 1 90 GLN 90 114 114 GLN GLN A . n A 1 91 LEU 91 115 115 LEU LEU A . n A 1 92 CYS 92 116 116 CYS CYS A . n A 1 93 ASP 93 117 117 ASP ASP A . n A 1 94 GLU 94 118 118 GLU GLU A . n A 1 95 TRP 95 119 119 TRP TRP A . n A 1 96 LYS 96 120 120 LYS LYS A . n A 1 97 ALA 97 121 121 ALA ALA A . n A 1 98 ARG 98 122 122 ARG ARG A . n A 1 99 LEU 99 123 123 LEU LEU A . n A 1 100 SER 100 124 124 SER SER A . n A 1 101 GLU 101 125 125 GLU GLU A . n A 1 102 LEU 102 126 126 LEU LEU A . n A 1 103 GLN 103 127 127 GLN GLN A . n A 1 104 GLN 104 128 128 GLN GLN A . n A 1 105 TYR 105 129 129 TYR TYR A . n A 1 106 ARG 106 130 130 ARG ARG A . n A 1 107 GLU 107 131 131 GLU GLU A . n A 1 108 LYS 108 132 132 LYS LYS A . n A 1 109 PHE 109 133 133 PHE PHE A . n A 1 110 LEU 110 134 134 LEU LEU A . n A 1 111 VAL 111 135 135 VAL VAL A . n B 2 1 DC 1 201 201 DC DC B . n B 2 2 DA 2 202 202 DA DA B . n B 2 3 DA 3 203 203 DA DA B . n B 2 4 DA 4 204 204 DA DA B . n B 2 5 DA 5 205 205 DA DA B . n B 2 6 DC 6 206 206 DC DC B . n B 2 7 DA 7 207 207 DA DA B . n B 2 8 DA 8 208 208 DA DA B . n B 2 9 DT 9 209 209 DT DT B . n B 2 10 DA 10 210 210 DA DA B . n B 2 11 DT 11 211 211 DT DT B . n B 2 12 DT 12 212 212 DT DT B . n C 3 1 DA 1 213 213 DA DA C . n C 3 2 DA 2 214 214 DA DA C . n C 3 3 DT 3 215 215 DT DT C . n C 3 4 DA 4 216 216 DA DA C . n C 3 5 DT 5 217 217 DT DT C . n C 3 6 DT 6 218 218 DT DT C . n C 3 7 DG 7 219 219 DG DG C . n C 3 8 DT 8 220 220 DT DT C . n C 3 9 DT 9 221 221 DT DT C . n C 3 10 DT 10 222 222 DT DT C . n C 3 11 DT 11 223 223 DT DT C . n C 3 12 DG 12 224 224 DG DG C . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 135 ? O ? A VAL 111 O 2 2 Y 1 A VAL 135 ? O ? A VAL 111 O 3 3 Y 1 A VAL 135 ? O ? A VAL 111 O 4 4 Y 1 A VAL 135 ? O ? A VAL 111 O 5 5 Y 1 A VAL 135 ? O ? A VAL 111 O 6 6 Y 1 A VAL 135 ? O ? A VAL 111 O 7 7 Y 1 A VAL 135 ? O ? A VAL 111 O 8 8 Y 1 A VAL 135 ? O ? A VAL 111 O 9 9 Y 1 A VAL 135 ? O ? A VAL 111 O 10 10 Y 1 A VAL 135 ? O ? A VAL 111 O 11 11 Y 1 A VAL 135 ? O ? A VAL 111 O 12 12 Y 1 A VAL 135 ? O ? A VAL 111 O 13 13 Y 1 A VAL 135 ? O ? A VAL 111 O 14 14 Y 1 A VAL 135 ? O ? A VAL 111 O 15 15 Y 1 A VAL 135 ? O ? A VAL 111 O 16 16 Y 1 A VAL 135 ? O ? A VAL 111 O 17 17 Y 1 A VAL 135 ? O ? A VAL 111 O 18 18 Y 1 A VAL 135 ? O ? A VAL 111 O 19 19 Y 1 A VAL 135 ? O ? A VAL 111 O 20 20 Y 1 A VAL 135 ? O ? A VAL 111 O # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5B7J _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5B7J _struct.title 'Structure model of Sap1-DNA complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5B7J _struct_keywords.text 'protein, DNA, interaction, complex, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SAP1_SCHPO P40847 ? 1 ;AKAQRTHLSLEEKIKLMRLVVRHKHELVDRKTSEFYAKIARIGYEDEGLAIHTESACRNQIISIMRVYEQRLAHRQPGMK TTPEEDELDQLCDEWKARLSELQQYREKFLV ; 25 2 PDB 5B7J 5B7J ? 2 ? 1 3 PDB 5B7J 5B7J ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5B7J A 1 ? 111 ? P40847 25 ? 135 ? 25 135 2 2 5B7J B 1 ? 12 ? 5B7J 201 ? 212 ? 201 212 3 3 5B7J C 1 ? 12 ? 5B7J 213 ? 224 ? 213 224 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3380 ? 1 MORE -24 ? 1 'SSA (A^2)' 10790 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 8 ? HIS A 23 ? LEU A 32 HIS A 47 1 ? 16 HELX_P HELX_P2 AA2 PHE A 35 ? GLY A 43 ? PHE A 59 GLY A 67 1 ? 9 HELX_P HELX_P3 AA3 SER A 55 ? HIS A 74 ? SER A 79 HIS A 98 1 ? 20 HELX_P HELX_P4 AA4 THR A 82 ? LEU A 110 ? THR A 106 LEU A 134 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 201 C DG 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 201 C DG 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 201 C DG 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 202 C DT 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 202 C DT 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 203 C DT 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 203 C DT 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 204 C DT 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 204 C DT 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 205 C DT 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 205 C DT 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 206 C DG 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 206 C DG 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 206 C DG 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 207 C DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 207 C DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 208 C DT 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 208 C DT 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 209 C DA 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 209 C DA 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 3 N3 ? ? B DA 210 C DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 3 O4 ? ? B DA 210 C DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 211 C DA 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 211 C DA 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 1 N1 ? ? B DT 212 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 1 N6 ? ? B DT 212 C DA 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HH11 A ARG 122 ? ? OE1 A GLU 125 ? ? 1.56 2 2 H A ASP 53 ? ? OE1 A GLU 58 ? ? 1.59 3 3 HG A SER 33 ? ? H A LEU 34 ? ? 1.28 4 3 OG A SER 57 ? ? OE1 A GLU 78 ? ? 2.18 5 7 OE1 A GLN 84 ? ? H A ILE 85 ? ? 1.48 6 9 O A ALA 80 ? ? HE21 A GLN 84 ? ? 1.56 7 11 NZ A LYS 37 ? ? OP1 B DA 205 ? ? 2.14 8 12 HH21 A ARG 90 ? ? HE22 A GLN 94 ? ? 1.34 9 14 HE2 A HIS 31 ? ? HZ1 A LYS 37 ? ? 1.21 10 16 O A ALA 80 ? ? HE21 A GLN 84 ? ? 1.59 11 17 HH21 A ARG 90 ? ? HE22 A GLN 94 ? ? 1.27 12 20 HH21 A ARG 90 ? ? HE22 A GLN 94 ? ? 1.25 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.533 1.496 0.037 0.006 N 2 2 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.534 1.496 0.038 0.006 N 3 2 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.532 1.496 0.036 0.006 N 4 3 C5 B DT 209 ? ? C7 B DT 209 ? ? 1.533 1.496 0.037 0.006 N 5 3 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.533 1.496 0.037 0.006 N 6 3 C5 C DT 220 ? ? C7 C DT 220 ? ? 1.535 1.496 0.039 0.006 N 7 3 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.536 1.496 0.040 0.006 N 8 3 C5 C DT 223 ? ? C7 C DT 223 ? ? 1.532 1.496 0.036 0.006 N 9 4 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.534 1.496 0.038 0.006 N 10 5 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.533 1.496 0.037 0.006 N 11 6 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.535 1.496 0.039 0.006 N 12 6 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.533 1.496 0.037 0.006 N 13 6 C5 C DT 222 ? ? C7 C DT 222 ? ? 1.533 1.496 0.037 0.006 N 14 6 C5 C DT 223 ? ? C7 C DT 223 ? ? 1.533 1.496 0.037 0.006 N 15 7 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.534 1.496 0.038 0.006 N 16 7 C5 C DT 220 ? ? C7 C DT 220 ? ? 1.538 1.496 0.042 0.006 N 17 7 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.532 1.496 0.036 0.006 N 18 7 C5 C DT 223 ? ? C7 C DT 223 ? ? 1.535 1.496 0.039 0.006 N 19 10 C5 C DT 217 ? ? C7 C DT 217 ? ? 1.537 1.496 0.041 0.006 N 20 11 C5 B DT 209 ? ? C7 B DT 209 ? ? 1.534 1.496 0.038 0.006 N 21 11 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.534 1.496 0.038 0.006 N 22 11 C5 C DT 220 ? ? C7 C DT 220 ? ? 1.533 1.496 0.037 0.006 N 23 11 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.534 1.496 0.038 0.006 N 24 11 C5 C DT 223 ? ? C7 C DT 223 ? ? 1.535 1.496 0.039 0.006 N 25 12 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.533 1.496 0.037 0.006 N 26 12 C5 C DT 217 ? ? C7 C DT 217 ? ? 1.535 1.496 0.039 0.006 N 27 15 C5 C DT 215 ? ? C7 C DT 215 ? ? 1.532 1.496 0.036 0.006 N 28 15 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.532 1.496 0.036 0.006 N 29 16 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.536 1.496 0.040 0.006 N 30 17 C5 C DT 217 ? ? C7 C DT 217 ? ? 1.534 1.496 0.038 0.006 N 31 19 C5 C DT 217 ? ? C7 C DT 217 ? ? 1.542 1.496 0.046 0.006 N 32 20 C5 B DT 212 ? ? C7 B DT 212 ? ? 1.532 1.496 0.036 0.006 N 33 20 C5 C DT 218 ? ? C7 C DT 218 ? ? 1.532 1.496 0.036 0.006 N 34 20 C5 C DT 221 ? ? C7 C DT 221 ? ? 1.535 1.496 0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.25 122.90 -3.65 0.60 N 2 1 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.05 122.90 -3.85 0.60 N 3 1 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 118.98 122.90 -3.92 0.60 N 4 1 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 112.09 108.30 3.79 0.30 N 5 1 C6 C DT 222 ? ? C5 C DT 222 ? ? C7 C DT 222 ? ? 119.26 122.90 -3.64 0.60 N 6 2 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.29 122.90 -3.61 0.60 N 7 2 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.38 108.30 3.08 0.30 N 8 3 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.04 122.90 -3.86 0.60 N 9 3 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 112.04 108.30 3.74 0.30 N 10 4 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.28 122.90 -3.62 0.60 N 11 4 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.05 122.90 -3.85 0.60 N 12 4 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 119.19 122.90 -3.71 0.60 N 13 4 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.37 108.30 3.07 0.30 N 14 5 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.13 122.90 -3.77 0.60 N 15 5 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.08 122.90 -3.82 0.60 N 16 5 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 119.06 122.90 -3.84 0.60 N 17 5 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.38 108.30 3.08 0.30 N 18 5 C6 C DT 222 ? ? C5 C DT 222 ? ? C7 C DT 222 ? ? 119.28 122.90 -3.62 0.60 N 19 6 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.21 122.90 -3.69 0.60 N 20 6 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.20 122.90 -3.70 0.60 N 21 6 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 118.97 122.90 -3.93 0.60 N 22 6 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.85 108.30 3.55 0.30 N 23 7 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.48 108.30 3.18 0.30 N 24 8 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.19 122.90 -3.71 0.60 N 25 8 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.05 122.90 -3.85 0.60 N 26 8 C6 B DT 212 ? ? C5 B DT 212 ? ? C7 B DT 212 ? ? 119.21 122.90 -3.69 0.60 N 27 8 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 119.14 122.90 -3.76 0.60 N 28 8 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.74 108.30 3.44 0.30 N 29 8 C6 C DT 220 ? ? C5 C DT 220 ? ? C7 C DT 220 ? ? 119.15 122.90 -3.75 0.60 N 30 9 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.81 108.30 3.51 0.30 N 31 10 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.00 122.90 -3.90 0.60 N 32 10 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.20 122.90 -3.70 0.60 N 33 10 C6 B DT 212 ? ? C5 B DT 212 ? ? C7 B DT 212 ? ? 119.00 122.90 -3.90 0.60 N 34 10 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 118.85 122.90 -4.05 0.60 N 35 10 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 112.15 108.30 3.85 0.30 N 36 10 C6 C DT 222 ? ? C5 C DT 222 ? ? C7 C DT 222 ? ? 119.22 122.90 -3.68 0.60 N 37 11 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 119.23 122.90 -3.67 0.60 N 38 11 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.76 108.30 3.46 0.30 N 39 12 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.15 122.90 -3.75 0.60 N 40 12 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.11 122.90 -3.79 0.60 N 41 12 C6 B DT 212 ? ? C5 B DT 212 ? ? C7 B DT 212 ? ? 119.18 122.90 -3.72 0.60 N 42 12 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 118.93 122.90 -3.97 0.60 N 43 12 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.21 108.30 2.91 0.30 N 44 12 C6 C DT 220 ? ? C5 C DT 220 ? ? C7 C DT 220 ? ? 119.26 122.90 -3.64 0.60 N 45 12 C6 C DT 222 ? ? C5 C DT 222 ? ? C7 C DT 222 ? ? 119.21 122.90 -3.69 0.60 N 46 13 "O4'" B DT 209 ? ? "C1'" B DT 209 ? ? N1 B DT 209 ? ? 110.17 108.30 1.87 0.30 N 47 13 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.65 108.30 3.35 0.30 N 48 14 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 110.11 108.30 1.81 0.30 N 49 15 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 118.95 122.90 -3.95 0.60 N 50 15 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 118.81 122.90 -4.09 0.60 N 51 15 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 118.69 122.90 -4.21 0.60 N 52 15 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.94 108.30 3.64 0.30 N 53 15 C6 C DT 220 ? ? C5 C DT 220 ? ? C7 C DT 220 ? ? 119.10 122.90 -3.80 0.60 N 54 16 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.28 122.90 -3.62 0.60 N 55 16 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.05 122.90 -3.85 0.60 N 56 16 C6 B DT 212 ? ? C5 B DT 212 ? ? C7 B DT 212 ? ? 119.21 122.90 -3.69 0.60 N 57 16 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 118.85 122.90 -4.05 0.60 N 58 16 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.65 108.30 3.35 0.30 N 59 16 C6 C DT 220 ? ? C5 C DT 220 ? ? C7 C DT 220 ? ? 119.25 122.90 -3.65 0.60 N 60 17 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.27 122.90 -3.63 0.60 N 61 17 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 118.93 122.90 -3.97 0.60 N 62 17 C6 B DT 212 ? ? C5 B DT 212 ? ? C7 B DT 212 ? ? 119.29 122.90 -3.61 0.60 N 63 17 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 118.89 122.90 -4.01 0.60 N 64 17 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 112.33 108.30 4.03 0.30 N 65 18 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 113.41 108.30 5.11 0.30 N 66 19 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.16 122.90 -3.74 0.60 N 67 19 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.09 108.30 2.79 0.30 N 68 19 C6 C DT 222 ? ? C5 C DT 222 ? ? C7 C DT 222 ? ? 119.28 122.90 -3.62 0.60 N 69 20 C6 B DT 211 ? ? C5 B DT 211 ? ? C7 B DT 211 ? ? 119.22 122.90 -3.68 0.60 N 70 20 C6 C DT 215 ? ? C5 C DT 215 ? ? C7 C DT 215 ? ? 119.07 122.90 -3.83 0.60 N 71 20 "O4'" C DT 217 ? ? "C1'" C DT 217 ? ? N1 C DT 217 ? ? 111.59 108.30 3.29 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 26 ? ? -36.99 -91.96 2 1 ALA A 27 ? ? 86.40 -176.20 3 1 LEU A 51 ? ? -173.26 134.71 4 1 ASP A 70 ? ? -143.46 -46.19 5 1 ALA A 74 ? ? 153.32 -104.94 6 1 ARG A 99 ? ? 34.74 28.14 7 2 LYS A 26 ? ? -44.94 -168.08 8 2 ALA A 27 ? ? 141.55 -128.49 9 2 ARG A 29 ? ? 166.48 100.06 10 2 LEU A 32 ? ? 45.13 100.88 11 2 ASP A 53 ? ? -152.57 -35.20 12 2 ASP A 70 ? ? -143.32 -46.12 13 2 ALA A 74 ? ? 154.27 -104.29 14 3 LYS A 26 ? ? -40.09 -97.94 15 3 ALA A 27 ? ? 89.81 172.94 16 3 HIS A 31 ? ? -94.61 -60.65 17 3 GLU A 50 ? ? -44.81 99.26 18 3 ARG A 54 ? ? -50.97 -77.51 19 3 ASP A 70 ? ? -143.22 -46.00 20 3 LEU A 73 ? ? -62.47 -86.63 21 3 HIS A 76 ? ? -147.15 -80.21 22 4 LYS A 26 ? ? -60.02 -143.47 23 4 ALA A 27 ? ? 147.70 -164.61 24 4 ARG A 29 ? ? -174.58 96.12 25 4 ASP A 70 ? ? -143.45 -46.11 26 4 ALA A 74 ? ? -38.22 163.98 27 4 GLN A 100 ? ? 177.06 157.11 28 5 ALA A 27 ? ? 79.15 162.85 29 5 GLN A 28 ? ? 65.97 -28.66 30 5 ARG A 29 ? ? 160.76 100.05 31 5 HIS A 31 ? ? -140.68 -56.05 32 5 ASP A 70 ? ? -143.46 -46.27 33 5 ALA A 74 ? ? -33.77 158.95 34 5 HIS A 76 ? ? 32.44 -152.96 35 6 LYS A 26 ? ? -49.83 85.00 36 6 ALA A 27 ? ? 162.06 -92.50 37 6 GLU A 50 ? ? -45.40 90.99 38 6 ASP A 70 ? ? -143.45 -46.04 39 6 ALA A 74 ? ? 152.91 -107.81 40 6 GLN A 100 ? ? 160.71 158.11 41 7 LYS A 26 ? ? -56.47 -163.58 42 7 ALA A 27 ? ? 150.70 -166.17 43 7 LEU A 32 ? ? 37.00 95.80 44 7 ASP A 70 ? ? -143.36 -46.01 45 7 ALA A 74 ? ? 154.25 -104.72 46 8 LYS A 26 ? ? -37.83 162.48 47 8 ALA A 27 ? ? 59.55 -168.08 48 8 GLN A 28 ? ? 35.28 65.63 49 8 ARG A 29 ? ? 55.06 86.69 50 8 LEU A 32 ? ? 51.75 77.15 51 8 GLU A 50 ? ? -45.21 97.95 52 8 ASP A 70 ? ? -143.52 -46.15 53 8 ALA A 74 ? ? -55.40 -140.61 54 8 GLN A 100 ? ? 165.77 145.40 55 9 LYS A 26 ? ? -56.26 -72.00 56 9 ARG A 29 ? ? 43.63 96.58 57 9 GLU A 50 ? ? -46.96 103.21 58 9 ASP A 70 ? ? -143.71 -46.25 59 9 LEU A 73 ? ? -128.24 -65.90 60 9 ALA A 74 ? ? -175.89 -131.56 61 10 LYS A 26 ? ? -32.46 -94.78 62 10 ALA A 27 ? ? 88.68 176.49 63 10 SER A 33 ? ? -102.90 -63.99 64 10 GLU A 50 ? ? -46.65 95.27 65 10 ASP A 70 ? ? -143.59 -46.26 66 10 LEU A 73 ? ? -94.83 -69.67 67 10 ALA A 74 ? ? -174.47 -152.39 68 10 GLN A 100 ? ? 79.35 53.37 69 11 ALA A 27 ? ? 80.58 -155.41 70 11 GLN A 28 ? ? 21.83 62.96 71 11 ARG A 29 ? ? 60.01 98.81 72 11 HIS A 31 ? ? -124.06 -57.04 73 11 SER A 33 ? ? -95.35 -62.21 74 11 ARG A 54 ? ? -32.43 -78.15 75 11 ASP A 70 ? ? -143.22 -46.05 76 11 ALA A 74 ? ? 153.73 -104.16 77 11 GLN A 100 ? ? -30.03 95.13 78 12 LYS A 26 ? ? -47.42 -95.52 79 12 ALA A 27 ? ? 92.29 -171.68 80 12 ARG A 29 ? ? -176.42 106.56 81 12 SER A 33 ? ? -113.42 -72.26 82 12 ASP A 70 ? ? -143.47 -46.28 83 12 LEU A 73 ? ? -90.60 -72.29 84 12 ALA A 74 ? ? -175.41 -127.30 85 12 GLU A 131 ? ? -39.32 -27.65 86 13 ALA A 27 ? ? 57.15 166.28 87 13 ARG A 29 ? ? 59.06 81.07 88 13 HIS A 31 ? ? -147.30 -12.16 89 13 SER A 33 ? ? -137.72 -85.75 90 13 GLU A 50 ? ? -43.40 102.64 91 13 ASP A 70 ? ? -143.68 -46.24 92 13 ALA A 74 ? ? -33.36 158.44 93 13 HIS A 76 ? ? 55.76 119.29 94 14 ALA A 27 ? ? -173.99 143.52 95 14 HIS A 31 ? ? -39.13 134.64 96 14 ASP A 70 ? ? -141.79 -45.18 97 14 LEU A 73 ? ? -79.28 -81.91 98 14 ALA A 74 ? ? -171.20 -156.54 99 14 ILE A 75 ? ? -59.18 179.14 100 14 THR A 77 ? ? -167.00 93.11 101 15 LYS A 26 ? ? -59.30 77.37 102 15 ALA A 27 ? ? 156.71 -88.98 103 15 GLN A 28 ? ? -35.05 -37.16 104 15 ARG A 29 ? ? 177.38 101.63 105 15 GLU A 50 ? ? -39.13 96.02 106 15 ASP A 70 ? ? -143.54 -46.17 107 15 HIS A 76 ? ? -129.46 -55.92 108 16 ARG A 29 ? ? 58.18 82.25 109 16 ASP A 70 ? ? -143.47 -46.03 110 16 ALA A 74 ? ? 156.10 -177.00 111 16 GLN A 100 ? ? -36.87 155.45 112 17 ALA A 27 ? ? 87.37 -49.87 113 17 ARG A 29 ? ? 63.59 85.35 114 17 HIS A 31 ? ? -132.41 -42.40 115 17 GLU A 50 ? ? -44.36 91.49 116 17 ARG A 54 ? ? -44.58 -99.67 117 17 ASP A 70 ? ? -143.59 -46.28 118 17 ILE A 75 ? ? -148.78 25.80 119 17 THR A 77 ? ? -158.99 0.90 120 17 GLU A 78 ? ? 60.10 -69.58 121 17 HIS A 98 ? ? -53.23 -76.99 122 17 ARG A 99 ? ? 43.06 85.31 123 18 LYS A 26 ? ? -27.05 143.07 124 18 ALA A 27 ? ? 58.58 161.67 125 18 GLN A 28 ? ? 66.73 -33.75 126 18 ARG A 29 ? ? 168.47 102.86 127 18 HIS A 31 ? ? -123.97 -78.22 128 18 SER A 33 ? ? 76.97 -71.89 129 18 GLU A 50 ? ? -48.28 99.66 130 18 ASP A 70 ? ? -143.71 -46.25 131 18 LEU A 73 ? ? -124.04 -73.53 132 18 ALA A 74 ? ? -147.87 -111.82 133 18 GLU A 78 ? ? -96.73 -60.81 134 19 ALA A 27 ? ? 18.87 97.31 135 19 GLN A 28 ? ? -24.94 -43.83 136 19 ASP A 70 ? ? -143.58 -46.30 137 19 LEU A 73 ? ? -113.56 -70.93 138 19 ALA A 74 ? ? -173.45 -128.59 139 19 ARG A 99 ? ? 33.58 31.35 140 20 LYS A 26 ? ? -65.25 -154.34 141 20 ALA A 27 ? ? 150.14 -166.38 142 20 ARG A 29 ? ? -176.63 99.56 143 20 GLU A 50 ? ? -69.17 99.10 144 20 ASP A 70 ? ? -143.30 -46.04 145 20 ALA A 74 ? ? 153.29 -106.26 146 20 GLN A 100 ? ? 169.96 142.47 # _pdbx_nmr_ensemble.entry_id 5B7J _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5B7J _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM [U-99% 15N][U-99% 13C; U-99% 15N] Sap1, 20 mM sodium phosphate, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N/13C_sap1 solution ? 3 ;0.5 mM DNA (5'-CAAAACAATATT-3'), 20 mM sodium phosphate, 90% H2O/10% D2O ; '90% H2O/10% D2O' 1H_DNA solution ? 2 ;0.5 mM [U-99% 13C; U-99% 15N] Sap1, 0.7 mM DNA (5'-CAAAACAATATT-3'), 20 mM sodium phosphate, 90% H2O/10% D2O ; '90% H2O/10% D2O' 15N/13C_complex solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Sap1 0.5 ? mM '[U-99% 15N][U-99% 13C; U-99% 15N]' 1 'sodium phosphate' 20 ? mM 'natural abundance' 3 ;DNA (5'-CAAAACAATATT-3') ; 0.5 ? mM 'natural abundance' 3 'sodium phosphate' 20 ? mM 'natural abundance' 2 Sap1 0.5 ? mM '[U-99% 13C; U-99% 15N]' 2 ;DNA (5'-CAAAACAATATT-3') ; 0.7 ? mM 'natural abundance' 2 'sodium phosphate' 20 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 60 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 7 1 1 '3D CBCA(CO)NH' 1 isotropic 8 1 1 '3D HNCACB' 1 isotropic 12 1 1 '3D HNCO' 1 isotropic 9 1 2 '2D 1H-15N HSQC' 1 isotropic 5 1 2 '3D CBCA(CO)NH' 1 isotropic 6 1 2 '3D HNCACB' 1 isotropic 10 1 2 '3D HNCO' 1 isotropic 11 1 2 '3D HNCA' 1 isotropic 2 1 2 '3D 1H-15N NOESY' 3 isotropic 3 1 2 '3D 1H-13C NOESY' 3 isotropic 13 1 2 '3D filtered NOESY' 3 isotropic 4 1 3 '2D 1H-1H NOESY' 3 isotropic # _pdbx_nmr_refine.entry_id 5B7J _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structure model of the Sap1-DNA complex was derived based on the crystal structure of Sap1, the B-form DNA model based on the 3D-DART server, and the experimentally obtained inter-molecular distance restraints from NMR NOESY spectra. ; _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 2 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5B7J 'double helix' 5B7J 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 0.126 -0.279 0.173 -0.942 -9.409 -2.812 1 B_DC201:DG224_C B 201 ? C 224 ? 19 1 1 B DA 2 1_555 C DT 11 1_555 0.018 -0.230 -0.030 -0.511 -16.444 -3.391 2 B_DA202:DT223_C B 202 ? C 223 ? 20 1 1 B DA 3 1_555 C DT 10 1_555 -0.067 -0.181 0.098 3.572 -21.266 0.832 3 B_DA203:DT222_C B 203 ? C 222 ? 20 1 1 B DA 4 1_555 C DT 9 1_555 0.172 -0.245 0.060 -0.252 -20.749 1.063 4 B_DA204:DT221_C B 204 ? C 221 ? 20 1 1 B DA 5 1_555 C DT 8 1_555 0.381 -0.140 0.065 4.512 -8.199 -2.229 5 B_DA205:DT220_C B 205 ? C 220 ? 20 1 1 B DC 6 1_555 C DG 7 1_555 -0.033 -0.257 -0.153 1.524 -15.667 -0.939 6 B_DC206:DG219_C B 206 ? C 219 ? 19 1 1 B DA 7 1_555 C DT 6 1_555 0.031 -0.320 0.013 2.065 -16.701 0.672 7 B_DA207:DT218_C B 207 ? C 218 ? 20 1 1 B DA 8 1_555 C DT 5 1_555 -0.366 -0.281 0.303 1.239 -33.898 0.239 8 B_DA208:DT217_C B 208 ? C 217 ? 20 1 1 B DT 9 1_555 C DA 4 1_555 -0.186 -0.150 -0.077 -4.716 -20.225 0.665 9 B_DT209:DA216_C B 209 ? C 216 ? 20 1 1 B DA 10 1_555 C DT 3 1_555 0.223 -0.216 0.096 -1.245 -10.903 -1.867 10 B_DA210:DT215_C B 210 ? C 215 ? 20 1 1 B DT 11 1_555 C DA 2 1_555 -0.212 -0.057 0.074 -0.181 -12.386 -3.321 11 B_DT211:DA214_C B 211 ? C 214 ? 20 1 1 B DT 12 1_555 C DA 1 1_555 0.003 -0.317 -0.139 2.169 -10.820 0.148 12 B_DT212:DA213_C B 212 ? C 213 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DA 2 1_555 C DT 11 1_555 0.729 -0.292 3.306 2.180 -1.296 36.658 -0.283 -0.853 3.350 -2.057 -3.461 36.743 1 BB_DC201DA202:DT223DG224_CC B 201 ? C 224 ? B 202 ? C 223 ? 1 B DA 2 1_555 C DT 11 1_555 B DA 3 1_555 C DT 10 1_555 0.330 -0.321 3.141 0.479 -6.023 36.327 0.285 -0.460 3.156 -9.579 -0.761 36.809 2 BB_DA202DA203:DT222DT223_CC B 202 ? C 223 ? B 203 ? C 222 ? 1 B DA 3 1_555 C DT 10 1_555 B DA 4 1_555 C DT 9 1_555 0.114 -0.262 3.280 0.507 -2.670 41.448 -0.085 -0.107 3.291 -3.768 -0.715 41.533 3 BB_DA203DA204:DT221DT222_CC B 203 ? C 222 ? B 204 ? C 221 ? 1 B DA 4 1_555 C DT 9 1_555 B DA 5 1_555 C DT 8 1_555 -0.069 -0.301 2.919 -0.979 4.426 37.463 -0.973 -0.006 2.867 6.860 1.517 37.726 4 BB_DA204DA205:DT220DT221_CC B 204 ? C 221 ? B 205 ? C 220 ? 1 B DA 5 1_555 C DT 8 1_555 B DC 6 1_555 C DG 7 1_555 -0.084 -0.532 3.121 -0.802 -2.133 32.205 -0.594 0.014 3.150 -3.839 1.443 32.284 5 BB_DA205DC206:DG219DT220_CC B 205 ? C 220 ? B 206 ? C 219 ? 1 B DC 6 1_555 C DG 7 1_555 B DA 7 1_555 C DT 6 1_555 -0.040 0.505 3.101 -1.155 14.533 39.751 -0.760 -0.060 3.093 20.554 1.634 42.239 6 BB_DC206DA207:DT218DG219_CC B 206 ? C 219 ? B 207 ? C 218 ? 1 B DA 7 1_555 C DT 6 1_555 B DA 8 1_555 C DT 5 1_555 0.114 -0.175 3.030 -1.326 2.358 37.392 -0.557 -0.338 3.008 3.672 2.065 37.486 7 BB_DA207DA208:DT217DT218_CC B 207 ? C 218 ? B 208 ? C 217 ? 1 B DA 8 1_555 C DT 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.543 -0.532 3.371 2.362 -16.173 35.959 1.251 1.104 3.267 -24.688 -3.606 39.388 8 BB_DA208DT209:DA216DT217_CC B 208 ? C 217 ? B 209 ? C 216 ? 1 B DT 9 1_555 C DA 4 1_555 B DA 10 1_555 C DT 3 1_555 -0.204 0.900 3.498 -2.308 -8.113 45.950 1.847 0.055 3.308 -10.290 2.927 46.676 9 BB_DT209DA210:DT215DA216_CC B 209 ? C 216 ? B 210 ? C 215 ? 1 B DA 10 1_555 C DT 3 1_555 B DT 11 1_555 C DA 2 1_555 -0.054 -0.618 3.304 -0.361 1.064 29.755 -1.427 0.028 3.281 2.072 0.703 29.775 10 BB_DA210DT211:DA214DT215_CC B 210 ? C 215 ? B 211 ? C 214 ? 1 B DT 11 1_555 C DA 2 1_555 B DT 12 1_555 C DA 1 1_555 0.014 -0.179 3.279 0.921 3.957 36.366 -0.830 0.104 3.242 6.316 -1.469 36.585 11 BB_DT211DT212:DA213DA214_CC B 211 ? C 214 ? B 212 ? C 213 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 500 ? 2 AVANCE ? Bruker 800 ? 3 AVANCE ? Bruker 950 ? # _atom_sites.entry_id 5B7J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_