HEADER HYDROLASE 08-JUN-16 5B7P TITLE STRUCTURES AND FUNCTIONAL ANALYSIS OF PERIPLASMIC 5- TITLE 2 METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE FROM TITLE 3 AEROMONAS HYDROPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MTA/SAH NUCLEOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 6-254; COMPND 5 EC: 3.2.2.16,3.2.2.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA; SOURCE 3 ORGANISM_TAXID: 380703; SOURCE 4 STRAIN: ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240; SOURCE 5 GENE: MTNN-1, AHA_0953; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AEROMONAS HYDROPHILA, MTAN-1, MTAN-2, SAH, MTA, 5-DAO, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XU REVDAT 3 20-MAR-24 5B7P 1 REMARK REVDAT 2 13-DEC-17 5B7P 1 JRNL REVDAT 1 14-DEC-16 5B7P 0 JRNL AUTH Y.XU,L.WANG,J.CHEN,J.ZHAO,S.FAN,Y.DONG,N.C.HA,C.QUAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF PERIPLASMIC JRNL TITL 2 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE JRNL TITL 3 FROM AEROMONAS HYDROPHILA. JRNL REF BIOCHEMISTRY V. 56 5347 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28862845 JRNL DOI 10.1021/ACS.BIOCHEM.7B00691 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 117632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1601 - 4.6197 0.99 3945 206 0.1731 0.1940 REMARK 3 2 4.6197 - 3.6710 1.00 3818 208 0.1251 0.1406 REMARK 3 3 3.6710 - 3.2081 1.00 3798 212 0.1359 0.1496 REMARK 3 4 3.2081 - 2.9154 1.00 3792 196 0.1373 0.1669 REMARK 3 5 2.9154 - 2.7067 1.00 3727 219 0.1385 0.1672 REMARK 3 6 2.7067 - 2.5473 1.00 3789 206 0.1286 0.1801 REMARK 3 7 2.5473 - 2.4199 1.00 3720 198 0.1312 0.1412 REMARK 3 8 2.4199 - 2.3146 1.00 3776 175 0.1229 0.1376 REMARK 3 9 2.3146 - 2.2256 1.00 3719 216 0.1199 0.1363 REMARK 3 10 2.2256 - 2.1488 1.00 3699 228 0.1237 0.1447 REMARK 3 11 2.1488 - 2.0817 1.00 3770 167 0.1234 0.1477 REMARK 3 12 2.0817 - 2.0222 1.00 3756 189 0.1270 0.1415 REMARK 3 13 2.0222 - 1.9690 1.00 3718 208 0.1251 0.1491 REMARK 3 14 1.9690 - 1.9210 1.00 3700 204 0.1268 0.1491 REMARK 3 15 1.9210 - 1.8773 1.00 3728 179 0.1252 0.1433 REMARK 3 16 1.8773 - 1.8374 1.00 3759 177 0.1275 0.1472 REMARK 3 17 1.8374 - 1.8006 1.00 3676 205 0.1285 0.1406 REMARK 3 18 1.8006 - 1.7667 1.00 3710 196 0.1302 0.1669 REMARK 3 19 1.7667 - 1.7351 1.00 3719 200 0.1294 0.1616 REMARK 3 20 1.7351 - 1.7057 1.00 3696 183 0.1247 0.1365 REMARK 3 21 1.7057 - 1.6782 1.00 3712 196 0.1272 0.1298 REMARK 3 22 1.6782 - 1.6524 1.00 3727 193 0.1304 0.1510 REMARK 3 23 1.6524 - 1.6281 1.00 3706 208 0.1320 0.1478 REMARK 3 24 1.6281 - 1.6052 1.00 3695 172 0.1342 0.1364 REMARK 3 25 1.6052 - 1.5835 1.00 3700 215 0.1347 0.1683 REMARK 3 26 1.5835 - 1.5629 1.00 3750 170 0.1370 0.1645 REMARK 3 27 1.5629 - 1.5434 1.00 3678 214 0.1433 0.1704 REMARK 3 28 1.5434 - 1.5248 1.00 3719 189 0.1487 0.1748 REMARK 3 29 1.5248 - 1.5071 1.00 3657 214 0.1523 0.1886 REMARK 3 30 1.5071 - 1.4901 0.90 3377 153 0.1641 0.2140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3943 REMARK 3 ANGLE : 1.268 5365 REMARK 3 CHIRALITY : 0.071 599 REMARK 3 PLANARITY : 0.006 697 REMARK 3 DIHEDRAL : 12.707 1389 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117632 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 24.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% (W/V) POLYETHYLENE GLYCOL 4000, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE (PH 4.6), EVAPORATION, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.55100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.10200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.10200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.55100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 709 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 219 CA CB CG CD OE1 OE2 REMARK 470 GLU B 219 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 433 O HOH A 490 1.97 REMARK 500 O HOH B 454 O HOH B 507 2.00 REMARK 500 O HOH A 563 O HOH A 613 2.02 REMARK 500 OG1 THR B 104 O HOH B 401 2.02 REMARK 500 O HOH B 586 O HOH B 676 2.04 REMARK 500 OD2 ASP B 38 O HOH B 402 2.10 REMARK 500 OG1 THR A 104 O HOH A 401 2.12 REMARK 500 O HOH B 572 O HOH B 674 2.12 REMARK 500 O HOH B 507 O HOH B 584 2.12 REMARK 500 OE2 GLU A 162 O HOH A 402 2.13 REMARK 500 O HOH B 544 O HOH B 655 2.14 REMARK 500 O HOH B 753 O HOH B 754 2.14 REMARK 500 O HOH A 421 O HOH A 437 2.14 REMARK 500 OE1 GLU A 162 O HOH A 403 2.15 REMARK 500 O HOH B 669 O HOH B 737 2.17 REMARK 500 O HOH B 734 O HOH B 750 2.17 REMARK 500 O HOH B 737 O HOH B 750 2.18 REMARK 500 O HOH A 490 O HOH A 561 2.18 REMARK 500 O HOH B 454 O HOH B 584 2.18 REMARK 500 O HOH A 433 O HOH A 561 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 437 O HOH A 437 6555 1.80 REMARK 500 O HOH A 634 O HOH A 705 2565 2.09 REMARK 500 O HOH A 421 O HOH A 421 6555 2.10 REMARK 500 O HOH A 405 O HOH B 510 6555 2.16 REMARK 500 O HOH A 677 O HOH B 423 6555 2.18 REMARK 500 O HOH A 711 O HOH B 790 5564 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 77 -176.00 63.13 REMARK 500 GLU A 221 -34.07 -132.48 REMARK 500 GLU B 77 -177.19 65.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 755 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 761 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 796 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 797 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 798 DISTANCE = 6.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B7N RELATED DB: PDB REMARK 900 RELATED ID: 5B7Q RELATED DB: PDB DBREF 5B7P A 27 275 UNP A0KGU9 A0KGU9_AERHH 6 254 DBREF 5B7P B 27 275 UNP A0KGU9 A0KGU9_AERHH 6 254 SEQRES 1 A 249 ALA SER ALA PRO ILE LEU ILE GLN GLY ALA MET ASP VAL SEQRES 2 A 249 GLU VAL GLU THR LEU VAL ALA ALA LEU LYS ASP LYS GLN SEQRES 3 A 249 GLU LEU THR VAL GLY SER TRP THR TYR TRP GLN GLY THR SEQRES 4 A 249 LEU SER GLY TYR PRO VAL VAL VAL SER ARG THR GLU VAL SEQRES 5 A 249 GLY LEU ALA ASN ALA ALA ALA ALA THR THR LEU ALA MET SEQRES 6 A 249 GLU ARG PHE GLN PRO ARG LEU VAL ILE ASN GLN GLY THR SEQRES 7 A 249 ALA GLY GLY HIS ASP PRO ALA LEU HIS ARG GLY ASP ILE SEQRES 8 A 249 VAL ILE GLY THR LYS SER PHE ASN MET GLY ALA TYR ARG SEQRES 9 A 249 SER ASP LEU THR PRO ALA GLU GLN GLY VAL ASP PRO SER SEQRES 10 A 249 LYS TRP HIS ASN PHE GLU VAL THR MET ARG LEU ARG ASP SEQRES 11 A 249 ASN GLY LYS LEU VAL GLU HIS SER SER PHE ALA GLY ASP SEQRES 12 A 249 PRO GLU LEU VAL GLY ARG ALA LEU GLY MET ALA ASP ARG SEQRES 13 A 249 TYR ARG HIS GLY ARG VAL VAL PRO GLY ILE ILE GLY THR SEQRES 14 A 249 ALA ASP GLU TRP ASN ARG GLN VAL ALA ARG ILE ASN TRP SEQRES 15 A 249 LEU HIS GLN THR TYR GLN THR ALA ALA GLU GLU MET GLU SEQRES 16 A 249 THR SER SER ALA ALA LEU VAL ALA GLU ALA TYR LYS VAL SEQRES 17 A 249 PRO PHE VAL GLY ILE ARG VAL LEU SER ASN THR ASP LEU SEQRES 18 A 249 HIS GLY GLU GLU PHE ASP PRO GLN THR ALA ILE HIS CYS SEQRES 19 A 249 GLN GLN PHE VAL ILE ASP TYR ALA LYS ALA LEU ILE ASN SEQRES 20 A 249 GLY PHE SEQRES 1 B 249 ALA SER ALA PRO ILE LEU ILE GLN GLY ALA MET ASP VAL SEQRES 2 B 249 GLU VAL GLU THR LEU VAL ALA ALA LEU LYS ASP LYS GLN SEQRES 3 B 249 GLU LEU THR VAL GLY SER TRP THR TYR TRP GLN GLY THR SEQRES 4 B 249 LEU SER GLY TYR PRO VAL VAL VAL SER ARG THR GLU VAL SEQRES 5 B 249 GLY LEU ALA ASN ALA ALA ALA ALA THR THR LEU ALA MET SEQRES 6 B 249 GLU ARG PHE GLN PRO ARG LEU VAL ILE ASN GLN GLY THR SEQRES 7 B 249 ALA GLY GLY HIS ASP PRO ALA LEU HIS ARG GLY ASP ILE SEQRES 8 B 249 VAL ILE GLY THR LYS SER PHE ASN MET GLY ALA TYR ARG SEQRES 9 B 249 SER ASP LEU THR PRO ALA GLU GLN GLY VAL ASP PRO SER SEQRES 10 B 249 LYS TRP HIS ASN PHE GLU VAL THR MET ARG LEU ARG ASP SEQRES 11 B 249 ASN GLY LYS LEU VAL GLU HIS SER SER PHE ALA GLY ASP SEQRES 12 B 249 PRO GLU LEU VAL GLY ARG ALA LEU GLY MET ALA ASP ARG SEQRES 13 B 249 TYR ARG HIS GLY ARG VAL VAL PRO GLY ILE ILE GLY THR SEQRES 14 B 249 ALA ASP GLU TRP ASN ARG GLN VAL ALA ARG ILE ASN TRP SEQRES 15 B 249 LEU HIS GLN THR TYR GLN THR ALA ALA GLU GLU MET GLU SEQRES 16 B 249 THR SER SER ALA ALA LEU VAL ALA GLU ALA TYR LYS VAL SEQRES 17 B 249 PRO PHE VAL GLY ILE ARG VAL LEU SER ASN THR ASP LEU SEQRES 18 B 249 HIS GLY GLU GLU PHE ASP PRO GLN THR ALA ILE HIS CYS SEQRES 19 B 249 GLN GLN PHE VAL ILE ASP TYR ALA LYS ALA LEU ILE ASN SEQRES 20 B 249 GLY PHE HET MTA A 301 35 HET MTA B 301 35 HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE FORMUL 3 MTA 2(C11 H15 N5 O3 S) FORMUL 5 HOH *759(H2 O) HELIX 1 AA1 MET A 37 GLU A 40 5 4 HELIX 2 AA2 VAL A 41 LEU A 48 1 8 HELIX 3 AA3 GLY A 79 GLN A 95 1 17 HELIX 4 AA4 PRO A 135 GLY A 139 5 5 HELIX 5 AA5 ASP A 141 TRP A 145 5 5 HELIX 6 AA6 GLU A 149 ARG A 153 5 5 HELIX 7 AA7 ASP A 169 MET A 179 1 11 HELIX 8 AA8 ALA A 180 TYR A 183 5 4 HELIX 9 AA9 GLN A 202 GLN A 214 1 13 HELIX 10 AB1 GLU A 221 TYR A 232 1 12 HELIX 11 AB2 PRO A 254 PHE A 275 1 22 HELIX 12 AB3 MET B 37 GLU B 40 5 4 HELIX 13 AB4 VAL B 41 LEU B 48 1 8 HELIX 14 AB5 GLY B 79 GLN B 95 1 17 HELIX 15 AB6 PRO B 135 GLY B 139 5 5 HELIX 16 AB7 ASP B 141 TRP B 145 5 5 HELIX 17 AB8 GLU B 149 ARG B 153 5 5 HELIX 18 AB9 ASP B 169 MET B 179 1 11 HELIX 19 AC1 ALA B 180 TYR B 183 5 4 HELIX 20 AC2 GLN B 202 GLN B 214 1 13 HELIX 21 AC3 GLU B 221 TYR B 232 1 12 HELIX 22 AC4 PRO B 254 PHE B 275 1 22 SHEET 1 AA1 9 LYS A 49 VAL A 56 0 SHEET 2 AA1 9 TRP A 59 LEU A 66 -1 O TYR A 61 N LEU A 54 SHEET 3 AA1 9 TYR A 69 ARG A 75 -1 O VAL A 73 N TRP A 62 SHEET 4 AA1 9 ILE A 31 GLY A 35 1 N ILE A 31 O VAL A 72 SHEET 5 AA1 9 LEU A 98 GLY A 107 1 O ILE A 100 N LEU A 32 SHEET 6 AA1 9 THR A 215 GLU A 218 -1 O GLU A 218 N GLY A 106 SHEET 7 AA1 9 VAL A 188 THR A 195 1 N ILE A 192 O ALA A 216 SHEET 8 AA1 9 ILE A 117 ASN A 125 1 N ILE A 119 O VAL A 189 SHEET 9 AA1 9 PHE A 166 ALA A 167 -1 O PHE A 166 N SER A 123 SHEET 1 AA2 8 LYS A 49 VAL A 56 0 SHEET 2 AA2 8 TRP A 59 LEU A 66 -1 O TYR A 61 N LEU A 54 SHEET 3 AA2 8 TYR A 69 ARG A 75 -1 O VAL A 73 N TRP A 62 SHEET 4 AA2 8 ILE A 31 GLY A 35 1 N ILE A 31 O VAL A 72 SHEET 5 AA2 8 LEU A 98 GLY A 107 1 O ILE A 100 N LEU A 32 SHEET 6 AA2 8 PHE A 236 ASN A 244 1 O ILE A 239 N ASN A 101 SHEET 7 AA2 8 ILE A 117 ASN A 125 -1 N VAL A 118 O ARG A 240 SHEET 8 AA2 8 PHE A 166 ALA A 167 -1 O PHE A 166 N SER A 123 SHEET 1 AA3 3 HIS A 146 ASN A 147 0 SHEET 2 AA3 3 TYR A 129 ARG A 130 -1 N ARG A 130 O HIS A 146 SHEET 3 AA3 3 GLU B 198 TRP B 199 1 O TRP B 199 N TYR A 129 SHEET 1 AA4 2 LEU A 154 ASP A 156 0 SHEET 2 AA4 2 LYS A 159 VAL A 161 -1 O VAL A 161 N LEU A 154 SHEET 1 AA5 3 GLU A 198 TRP A 199 0 SHEET 2 AA5 3 TYR B 129 ARG B 130 1 O TYR B 129 N TRP A 199 SHEET 3 AA5 3 HIS B 146 ASN B 147 -1 O HIS B 146 N ARG B 130 SHEET 1 AA6 9 LYS B 49 VAL B 56 0 SHEET 2 AA6 9 TRP B 59 LEU B 66 -1 O GLN B 63 N GLN B 52 SHEET 3 AA6 9 TYR B 69 ARG B 75 -1 O VAL B 73 N TRP B 62 SHEET 4 AA6 9 ILE B 31 GLY B 35 1 N ILE B 31 O VAL B 72 SHEET 5 AA6 9 LEU B 98 GLY B 107 1 O ILE B 100 N LEU B 32 SHEET 6 AA6 9 THR B 215 GLU B 218 -1 O GLU B 218 N GLY B 106 SHEET 7 AA6 9 VAL B 188 THR B 195 1 N ILE B 192 O ALA B 216 SHEET 8 AA6 9 ILE B 117 ASN B 125 1 N ILE B 119 O VAL B 189 SHEET 9 AA6 9 PHE B 166 ALA B 167 -1 O PHE B 166 N SER B 123 SHEET 1 AA7 8 LYS B 49 VAL B 56 0 SHEET 2 AA7 8 TRP B 59 LEU B 66 -1 O GLN B 63 N GLN B 52 SHEET 3 AA7 8 TYR B 69 ARG B 75 -1 O VAL B 73 N TRP B 62 SHEET 4 AA7 8 ILE B 31 GLY B 35 1 N ILE B 31 O VAL B 72 SHEET 5 AA7 8 LEU B 98 GLY B 107 1 O ILE B 100 N LEU B 32 SHEET 6 AA7 8 PHE B 236 ASN B 244 1 O ILE B 239 N ASN B 101 SHEET 7 AA7 8 ILE B 117 ASN B 125 -1 N VAL B 118 O ARG B 240 SHEET 8 AA7 8 PHE B 166 ALA B 167 -1 O PHE B 166 N SER B 123 SHEET 1 AA8 2 LEU B 154 ASP B 156 0 SHEET 2 AA8 2 LYS B 159 VAL B 161 -1 O VAL B 161 N LEU B 154 SITE 1 AC1 16 ALA A 36 MET A 37 THR A 104 ALA A 105 SITE 2 AC1 16 GLY A 106 GLU A 198 TRP A 199 GLU A 218 SITE 3 AC1 16 GLU A 219 MET A 220 GLU A 221 ARG A 240 SITE 4 AC1 16 ASN A 244 HOH A 401 HOH A 455 HOH A 548 SITE 1 AC2 15 ALA B 36 THR B 104 ALA B 105 GLY B 106 SITE 2 AC2 15 GLU B 198 TRP B 199 GLU B 218 GLU B 219 SITE 3 AC2 15 MET B 220 GLU B 221 ARG B 240 ASN B 244 SITE 4 AC2 15 HOH B 401 HOH B 461 HOH B 515 CRYST1 102.725 102.725 118.653 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009735 0.005620 0.000000 0.00000 SCALE2 0.000000 0.011241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008428 0.00000