HEADER ISOMERASE 10-JUN-16 5B7Z TITLE CRYSTAL STRUCTURE OF HYPERTHERMOPHILIC THERMOTOGA MARITIMA L-KETOSE-3- TITLE 2 EPIMERASE WITH NI2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN TM_0416; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-KETOSE-3-EPIMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM_0416; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS EPIMERASE, NI2+, HYPERTHERMOPHILIC, EUBACTERIUM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.P.CAO,S.M.SHIN,D.W.LEE,S.H.LEE REVDAT 4 08-NOV-23 5B7Z 1 REMARK LINK REVDAT 3 02-MAY-18 5B7Z 1 JRNL REVDAT 2 06-DEC-17 5B7Z 1 JRNL REVDAT 1 15-MAR-17 5B7Z 0 JRNL AUTH S.M.SHIN,T.P.CAO,J.M.CHOI,S.B.KIM,S.J.LEE,S.H.LEE,D.W.LEE JRNL TITL TM0416, A HYPERTHERMOPHILIC PROMISCUOUS NONPHOSPHORYLATED JRNL TITL 2 SUGAR ISOMERASE, CATALYZES VARIOUS C5AND C6EPIMERIZATION JRNL TITL 3 REACTIONS JRNL REF APPL. ENVIRON. MICROBIOL. V. 83 2017 JRNL REFN ESSN 1098-5336 JRNL PMID 28258150 JRNL DOI 10.1128/AEM.03291-16 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 86681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5286 - 4.6502 0.97 2898 153 0.1746 0.1819 REMARK 3 2 4.6502 - 3.6917 0.92 2737 147 0.1533 0.1587 REMARK 3 3 3.6917 - 3.2253 0.96 2854 166 0.1571 0.1782 REMARK 3 4 3.2253 - 2.9305 0.97 2876 159 0.1696 0.1846 REMARK 3 5 2.9305 - 2.7205 0.98 2939 166 0.1674 0.1952 REMARK 3 6 2.7205 - 2.5601 0.98 2924 153 0.1695 0.1905 REMARK 3 7 2.5601 - 2.4319 0.98 2896 150 0.1721 0.1853 REMARK 3 8 2.4319 - 2.3261 0.97 2932 147 0.1680 0.2219 REMARK 3 9 2.3261 - 2.2365 0.98 2903 167 0.1655 0.1923 REMARK 3 10 2.2365 - 2.1594 0.97 2896 157 0.1644 0.1901 REMARK 3 11 2.1594 - 2.0918 0.97 2867 158 0.1671 0.1882 REMARK 3 12 2.0918 - 2.0320 0.97 2880 153 0.1683 0.2058 REMARK 3 13 2.0320 - 1.9786 0.97 2877 156 0.1722 0.2040 REMARK 3 14 1.9786 - 1.9303 0.96 2881 132 0.1719 0.2048 REMARK 3 15 1.9303 - 1.8864 0.96 2862 156 0.1739 0.1768 REMARK 3 16 1.8864 - 1.8463 0.96 2884 156 0.1746 0.2200 REMARK 3 17 1.8463 - 1.8093 0.96 2851 159 0.1777 0.2255 REMARK 3 18 1.8093 - 1.7752 0.96 2883 128 0.1779 0.1962 REMARK 3 19 1.7752 - 1.7435 0.96 2873 162 0.1826 0.2286 REMARK 3 20 1.7435 - 1.7139 0.96 2843 159 0.1754 0.2304 REMARK 3 21 1.7139 - 1.6863 0.96 2876 144 0.1843 0.1872 REMARK 3 22 1.6863 - 1.6603 0.95 2820 138 0.1881 0.1976 REMARK 3 23 1.6603 - 1.6359 0.95 2834 152 0.1966 0.2497 REMARK 3 24 1.6359 - 1.6129 0.93 2803 152 0.2019 0.2674 REMARK 3 25 1.6129 - 1.5911 0.91 2655 161 0.2070 0.2704 REMARK 3 26 1.5911 - 1.5704 0.85 2552 123 0.2115 0.2384 REMARK 3 27 1.5704 - 1.5508 0.80 2399 152 0.2087 0.2492 REMARK 3 28 1.5508 - 1.5321 0.72 2153 115 0.2123 0.2924 REMARK 3 29 1.5321 - 1.5143 0.66 1999 90 0.2209 0.2373 REMARK 3 30 1.5143 - 1.4973 0.56 1635 88 0.2193 0.2817 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4449 REMARK 3 ANGLE : 1.112 5968 REMARK 3 CHIRALITY : 0.046 668 REMARK 3 PLANARITY : 0.005 756 REMARK 3 DIHEDRAL : 14.157 1687 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5B7Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 5%(W/W) PEG1000, 20%(V/V) REMARK 280 PEG200, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 THR A 270 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LEU B 269 REMARK 465 THR B 270 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 136 NE NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 587 O HOH A 600 1.81 REMARK 500 O HOH A 641 O HOH A 647 1.83 REMARK 500 O HOH B 415 O HOH B 609 1.83 REMARK 500 O HOH A 630 O HOH A 702 1.88 REMARK 500 O HOH B 499 O HOH B 688 1.91 REMARK 500 OD1 ASP B 49 O HOH B 401 1.92 REMARK 500 O HOH B 592 O HOH B 643 1.92 REMARK 500 O HOH B 541 O HOH B 603 1.92 REMARK 500 O HOH A 457 O HOH A 600 1.93 REMARK 500 O HOH A 662 O HOH B 583 1.95 REMARK 500 O HOH B 600 O HOH B 661 1.95 REMARK 500 O HOH B 469 O HOH B 630 1.95 REMARK 500 OE2 GLU B 139 O HOH B 402 1.96 REMARK 500 O HOH B 524 O HOH B 709 1.97 REMARK 500 O HOH A 492 O HOH A 493 1.98 REMARK 500 O HOH A 572 O HOH A 690 1.99 REMARK 500 O HOH A 733 O HOH A 739 2.00 REMARK 500 OE1 GLU B 52 O HOH B 403 2.01 REMARK 500 O HOH A 560 O HOH A 653 2.02 REMARK 500 O HOH A 544 O HOH A 599 2.03 REMARK 500 NZ LYS A 90 OE2 GLU B 142 2.08 REMARK 500 OH TYR B 123 OD2 ASP B 164 2.09 REMARK 500 O HOH A 611 O HOH A 667 2.10 REMARK 500 O HOH B 715 O HOH B 717 2.10 REMARK 500 O HOH A 480 O HOH A 575 2.10 REMARK 500 O HOH B 657 O HOH B 690 2.11 REMARK 500 O HOH A 685 O HOH A 706 2.11 REMARK 500 O HOH B 626 O HOH B 692 2.13 REMARK 500 O HOH B 551 O HOH B 594 2.13 REMARK 500 O HOH B 622 O HOH B 672 2.13 REMARK 500 O HOH B 624 O HOH B 633 2.14 REMARK 500 O HOH B 491 O HOH B 697 2.14 REMARK 500 NZ LYS B 20 O HOH B 404 2.15 REMARK 500 OE1 GLU A 139 O HOH A 401 2.15 REMARK 500 O HOH A 655 O HOH A 726 2.15 REMARK 500 O HOH B 411 O HOH B 670 2.17 REMARK 500 O HOH A 661 O HOH A 699 2.17 REMARK 500 OD1 ASN A 237 O HOH A 402 2.18 REMARK 500 O HOH A 456 O HOH A 599 2.19 REMARK 500 O HOH A 618 O HOH A 671 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 441 O HOH A 652 1655 1.83 REMARK 500 O HOH A 648 O HOH B 653 1545 2.08 REMARK 500 O HOH A 667 O HOH B 635 1544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 14 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 -99.38 105.62 REMARK 500 ILE A 159 83.28 68.24 REMARK 500 ARG A 238 -148.11 -108.90 REMARK 500 LYS A 268 44.07 -95.84 REMARK 500 ILE B 159 84.25 66.29 REMARK 500 ARG B 238 -157.39 -109.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 742 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 743 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 745 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 746 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 747 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 748 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH B 721 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 722 DISTANCE = 6.26 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PG B 304 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 305 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 149 OE2 REMARK 620 2 ASP A 182 OD2 95.5 REMARK 620 3 HIS A 208 ND1 104.4 116.9 REMARK 620 4 GLU A 243 OE2 166.9 86.2 86.2 REMARK 620 5 HOH A 429 O 85.1 141.2 100.2 85.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 149 OE2 REMARK 620 2 ASP B 182 OD2 94.8 REMARK 620 3 HIS B 208 ND1 104.5 117.1 REMARK 620 4 GLU B 243 OE2 164.7 84.7 89.2 REMARK 620 5 HOH B 418 O 88.1 139.3 101.2 82.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PG B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B7Y RELATED DB: PDB REMARK 900 RELATED ID: 5B80 RELATED DB: PDB DBREF 5B7Z A 1 270 UNP Q9WYP7 Y416_THEMA 1 270 DBREF 5B7Z B 1 270 UNP Q9WYP7 Y416_THEMA 1 270 SEQADV 5B7Z MET A -19 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z GLY A -18 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER A -17 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER A -16 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS A -15 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS A -14 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS A -13 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS A -12 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS A -11 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS A -10 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER A -9 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER A -8 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z GLY A -7 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z LEU A -6 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z VAL A -5 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z PRO A -4 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z ARG A -3 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z GLY A -2 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER A -1 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS A 0 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z MET B -19 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z GLY B -18 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER B -17 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER B -16 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS B -15 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS B -14 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS B -13 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS B -12 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS B -11 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS B -10 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER B -9 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER B -8 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z GLY B -7 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z LEU B -6 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z VAL B -5 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z PRO B -4 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z ARG B -3 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z GLY B -2 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z SER B -1 UNP Q9WYP7 EXPRESSION TAG SEQADV 5B7Z HIS B 0 UNP Q9WYP7 EXPRESSION TAG SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LYS LEU SER LEU VAL SEQRES 3 A 290 ILE SER THR SER ASP ALA ALA PHE ASP ALA LEU ALA PHE SEQRES 4 A 290 LYS GLY ASP LEU ARG LYS GLY MET GLU LEU ALA LYS ARG SEQRES 5 A 290 VAL GLY TYR GLN ALA VAL GLU ILE ALA VAL ARG ASP PRO SEQRES 6 A 290 SER ILE VAL ASP TRP ASN GLU VAL LYS ILE LEU SER GLU SEQRES 7 A 290 GLU LEU ASN LEU PRO ILE CYS ALA ILE GLY THR GLY GLN SEQRES 8 A 290 ALA TYR LEU ALA ASP GLY LEU SER LEU THR HIS PRO ASN SEQRES 9 A 290 ASP GLU ILE ARG LYS LYS ALA ILE GLU ARG VAL VAL LYS SEQRES 10 A 290 HIS THR GLU VAL ALA GLY MET PHE GLY ALA LEU VAL ILE SEQRES 11 A 290 ILE GLY LEU VAL ARG GLY ARG ARG GLU GLY ARG SER TYR SEQRES 12 A 290 GLU GLU THR GLU GLU LEU PHE ILE GLU SER MET LYS ARG SEQRES 13 A 290 LEU LEU GLU LEU THR GLU HIS ALA LYS PHE VAL ILE GLU SEQRES 14 A 290 PRO LEU ASN ARG TYR GLU THR ASP PHE ILE ASN THR ILE SEQRES 15 A 290 ASP ASP ALA LEU ARG ILE LEU ARG LYS ILE ASN SER ASN SEQRES 16 A 290 ARG VAL GLY ILE LEU ALA ASP THR PHE HIS MET ASN ILE SEQRES 17 A 290 GLU GLU VAL ASN ILE PRO GLU SER LEU LYS ARG ALA GLY SEQRES 18 A 290 GLU LYS LEU TYR HIS PHE HIS VAL ALA ASP SER ASN ARG SEQRES 19 A 290 TRP ALA PRO GLY CYS GLY HIS PHE ASP PHE ARG SER VAL SEQRES 20 A 290 PHE ASN THR LEU LYS GLU ILE GLY TYR ASN ARG TYR VAL SEQRES 21 A 290 SER VAL GLU CYS LEU PRO LEU PRO GLY GLY MET GLU GLU SEQRES 22 A 290 ALA ALA GLU ILE ALA PHE LYS THR LEU LYS GLU LEU ILE SEQRES 23 A 290 ILE LYS LEU THR SEQRES 1 B 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 290 LEU VAL PRO ARG GLY SER HIS MET LYS LEU SER LEU VAL SEQRES 3 B 290 ILE SER THR SER ASP ALA ALA PHE ASP ALA LEU ALA PHE SEQRES 4 B 290 LYS GLY ASP LEU ARG LYS GLY MET GLU LEU ALA LYS ARG SEQRES 5 B 290 VAL GLY TYR GLN ALA VAL GLU ILE ALA VAL ARG ASP PRO SEQRES 6 B 290 SER ILE VAL ASP TRP ASN GLU VAL LYS ILE LEU SER GLU SEQRES 7 B 290 GLU LEU ASN LEU PRO ILE CYS ALA ILE GLY THR GLY GLN SEQRES 8 B 290 ALA TYR LEU ALA ASP GLY LEU SER LEU THR HIS PRO ASN SEQRES 9 B 290 ASP GLU ILE ARG LYS LYS ALA ILE GLU ARG VAL VAL LYS SEQRES 10 B 290 HIS THR GLU VAL ALA GLY MET PHE GLY ALA LEU VAL ILE SEQRES 11 B 290 ILE GLY LEU VAL ARG GLY ARG ARG GLU GLY ARG SER TYR SEQRES 12 B 290 GLU GLU THR GLU GLU LEU PHE ILE GLU SER MET LYS ARG SEQRES 13 B 290 LEU LEU GLU LEU THR GLU HIS ALA LYS PHE VAL ILE GLU SEQRES 14 B 290 PRO LEU ASN ARG TYR GLU THR ASP PHE ILE ASN THR ILE SEQRES 15 B 290 ASP ASP ALA LEU ARG ILE LEU ARG LYS ILE ASN SER ASN SEQRES 16 B 290 ARG VAL GLY ILE LEU ALA ASP THR PHE HIS MET ASN ILE SEQRES 17 B 290 GLU GLU VAL ASN ILE PRO GLU SER LEU LYS ARG ALA GLY SEQRES 18 B 290 GLU LYS LEU TYR HIS PHE HIS VAL ALA ASP SER ASN ARG SEQRES 19 B 290 TRP ALA PRO GLY CYS GLY HIS PHE ASP PHE ARG SER VAL SEQRES 20 B 290 PHE ASN THR LEU LYS GLU ILE GLY TYR ASN ARG TYR VAL SEQRES 21 B 290 SER VAL GLU CYS LEU PRO LEU PRO GLY GLY MET GLU GLU SEQRES 22 B 290 ALA ALA GLU ILE ALA PHE LYS THR LEU LYS GLU LEU ILE SEQRES 23 B 290 ILE LYS LEU THR HET MPD A 301 8 HET MPD A 302 8 HET MPD A 303 8 HET MPD A 304 8 HET NI A 305 1 HET 1PG A 306 17 HET 1PG A 307 17 HET MPD B 301 8 HET NI B 302 1 HET 1PG B 303 17 HET 1PG B 304 12 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM NI NICKEL (II) ION HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)- HETNAM 2 1PG ETHANOL FORMUL 3 MPD 5(C6 H14 O2) FORMUL 7 NI 2(NI 2+) FORMUL 8 1PG 4(C11 H24 O6) FORMUL 14 HOH *670(H2 O) HELIX 1 AA1 ASP A 15 GLY A 34 1 20 HELIX 2 AA2 ASP A 44 VAL A 48 5 5 HELIX 3 AA3 ASP A 49 ASN A 61 1 13 HELIX 4 AA4 GLY A 70 ALA A 75 1 6 HELIX 5 AA5 ASN A 84 GLY A 106 1 23 HELIX 6 AA6 GLY A 112 GLY A 116 5 5 HELIX 7 AA7 SER A 122 THR A 141 1 20 HELIX 8 AA8 THR A 161 ASN A 173 1 13 HELIX 9 AA9 THR A 183 GLU A 190 1 8 HELIX 10 AB1 ASN A 192 GLY A 201 1 10 HELIX 11 AB2 ASP A 223 ILE A 234 1 12 HELIX 12 AB3 GLY A 250 LYS A 268 1 19 HELIX 13 AB4 ASP B 11 GLY B 34 1 24 HELIX 14 AB5 ASP B 44 VAL B 48 5 5 HELIX 15 AB6 ASP B 49 ASN B 61 1 13 HELIX 16 AB7 GLY B 70 ALA B 75 1 6 HELIX 17 AB8 ASN B 84 PHE B 105 1 22 HELIX 18 AB9 GLY B 112 GLY B 116 5 5 HELIX 19 AC1 SER B 122 THR B 141 1 20 HELIX 20 AC2 THR B 161 ASN B 173 1 13 HELIX 21 AC3 THR B 183 GLU B 190 1 8 HELIX 22 AC4 ASN B 192 GLY B 201 1 10 HELIX 23 AC5 ASP B 223 ILE B 234 1 12 HELIX 24 AC6 GLY B 250 LYS B 268 1 19 SHEET 1 AA1 9 LYS A 2 VAL A 6 0 SHEET 2 AA1 9 ALA A 37 ALA A 41 1 O GLU A 39 N LEU A 5 SHEET 3 AA1 9 ILE A 64 GLY A 68 1 O GLY A 68 N ILE A 40 SHEET 4 AA1 9 LEU A 108 ILE A 111 1 O LEU A 108 N ILE A 67 SHEET 5 AA1 9 PHE A 146 ILE A 148 1 O VAL A 147 N ILE A 111 SHEET 6 AA1 9 VAL A 177 ASP A 182 1 O GLY A 178 N ILE A 148 SHEET 7 AA1 9 LEU A 204 VAL A 209 1 O HIS A 208 N ALA A 181 SHEET 8 AA1 9 TYR A 239 VAL A 242 1 O SER A 241 N PHE A 207 SHEET 9 AA1 9 LYS A 2 VAL A 6 1 N LYS A 2 O VAL A 240 SHEET 1 AA2 9 LYS B 2 VAL B 6 0 SHEET 2 AA2 9 ALA B 37 ALA B 41 1 O GLU B 39 N LEU B 5 SHEET 3 AA2 9 ILE B 64 GLY B 68 1 O GLY B 68 N ILE B 40 SHEET 4 AA2 9 LEU B 108 ILE B 111 1 O LEU B 108 N ILE B 67 SHEET 5 AA2 9 PHE B 146 ILE B 148 1 O VAL B 147 N ILE B 111 SHEET 6 AA2 9 VAL B 177 ASP B 182 1 O GLY B 178 N ILE B 148 SHEET 7 AA2 9 LEU B 204 VAL B 209 1 O HIS B 208 N ALA B 181 SHEET 8 AA2 9 TYR B 239 VAL B 242 1 O SER B 241 N PHE B 207 SHEET 9 AA2 9 LYS B 2 VAL B 6 1 N LYS B 2 O VAL B 240 LINK OE2 GLU A 149 NI NI A 305 1555 1555 2.02 LINK OD2 ASP A 182 NI NI A 305 1555 1555 1.99 LINK ND1 HIS A 208 NI NI A 305 1555 1555 1.99 LINK OE2 GLU A 243 NI NI A 305 1555 1555 2.11 LINK NI NI A 305 O HOH A 429 1555 1555 2.30 LINK OE2 GLU B 149 NI NI B 302 1555 1555 2.02 LINK OD2 ASP B 182 NI NI B 302 1555 1555 2.01 LINK ND1 HIS B 208 NI NI B 302 1555 1555 2.04 LINK OE2 GLU B 243 NI NI B 302 1555 1555 2.08 LINK NI NI B 302 O HOH B 418 1555 1555 2.31 CISPEP 1 ALA A 13 PHE A 14 0 22.63 CISPEP 2 LEU A 247 PRO A 248 0 -0.82 CISPEP 3 LEU B 247 PRO B 248 0 1.54 SITE 1 AC1 6 ARG A 117 ARG A 153 THR A 156 ASP A 157 SITE 2 AC1 6 HOH A 451 HOH A 549 SITE 1 AC2 6 LYS A 97 GLU A 100 VAL A 101 MET A 104 SITE 2 AC2 6 HOH A 416 1PG B 304 SITE 1 AC3 4 ARG A 214 CYS A 244 LEU A 245 HOH A 480 SITE 1 AC4 4 LYS A 89 ILE A 92 ARG A 136 1PG B 303 SITE 1 AC5 5 GLU A 149 ASP A 182 HIS A 208 GLU A 243 SITE 2 AC5 5 HOH A 429 SITE 1 AC6 5 LEU A 108 LYS A 145 ASN A 175 TYR A 205 SITE 2 AC6 5 ARG A 238 SITE 1 AC7 10 MET A 1 GLY A 34 GLN A 36 GLU A 125 SITE 2 AC7 10 GLU A 128 LEU A 129 PHE A 259 LYS A 263 SITE 3 AC7 10 ILE A 266 ILE A 267 SITE 1 AC8 3 ARG B 214 GLU B 243 HOH B 654 SITE 1 AC9 5 GLU B 149 ASP B 182 HIS B 208 GLU B 243 SITE 2 AC9 5 HOH B 418 SITE 1 AD1 10 LEU A 140 MPD A 304 GLY B 106 LEU B 108 SITE 2 AD1 10 HIS B 143 LYS B 145 ASN B 175 TYR B 205 SITE 3 AD1 10 ARG B 238 HOH B 496 SITE 1 AD2 11 GLU A 100 MPD A 302 LEU B 169 ASN B 173 SITE 2 AD2 11 SER B 174 ASN B 175 VAL B 177 GLU B 202 SITE 3 AD2 11 LYS B 203 TYR B 205 HOH B 651 CRYST1 50.225 55.220 58.693 107.16 102.23 92.35 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019910 0.000816 0.004809 0.00000 SCALE2 0.000000 0.018125 0.005933 0.00000 SCALE3 0.000000 0.000000 0.018344 0.00000