HEADER RNA BINDING PROTEIN 13-JUN-16 5B88 TITLE RRM-LIKE DOMAIN OF DEAD-BOX PROTEIN, CSDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DEAD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM-LIKE DOMAIN, UNP RESIDUES 482-564; COMPND 5 SYNONYM: COLD-SHOCK DEAD BOX PROTEIN A,TRANSLATION FACTOR W2; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: DEAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.XU,J.PENG,J.ZHANG,J.WU,Y.TANG,Y.SHI REVDAT 4 15-MAY-24 5B88 1 REMARK REVDAT 3 14-JUN-23 5B88 1 REMARK REVDAT 2 12-DEC-18 5B88 1 JRNL REVDAT 1 31-MAY-17 5B88 0 JRNL AUTH L.XU,L.WANG,J.PENG,F.LI,L.WU,B.ZHANG,M.LV,J.ZHANG,Q.GONG, JRNL AUTH 2 R.ZHANG,X.ZUO,Z.ZHANG,J.WU,Y.TANG,Y.SHI JRNL TITL INSIGHTS INTO THE STRUCTURE OF DIMERIC RNA HELICASE CSDA AND JRNL TITL 2 INDISPENSABLE ROLE OF ITS C-TERMINAL REGIONS. JRNL REF STRUCTURE V. 25 1795 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 29107486 JRNL DOI 10.1016/J.STR.2017.09.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000651. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 25 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 RRM-LIKE DOMAIN, 100% D2O; 1 MM REMARK 210 [U-99% 13C; U-99% 15N] RRM-LIKE REMARK 210 DOMAIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 485 103.66 -50.46 REMARK 500 1 GLU A 492 49.72 -94.32 REMARK 500 1 ILE A 531 141.35 -173.47 REMARK 500 1 MET A 537 67.41 -176.75 REMARK 500 1 PRO A 538 -170.00 -69.81 REMARK 500 1 PHE A 545 45.68 -88.06 REMARK 500 1 PRO A 554 76.52 -69.73 REMARK 500 1 ASN A 556 58.92 -144.16 REMARK 500 2 VAL A 483 -40.03 -133.38 REMARK 500 2 ASP A 485 101.00 -53.95 REMARK 500 2 GLU A 492 51.15 -98.59 REMARK 500 2 SER A 527 31.17 -145.09 REMARK 500 2 ILE A 531 142.38 -174.23 REMARK 500 2 MET A 537 68.08 -176.41 REMARK 500 2 PRO A 538 -176.11 -69.77 REMARK 500 2 PHE A 545 45.26 -87.32 REMARK 500 2 PRO A 554 78.61 -69.79 REMARK 500 2 ASN A 556 47.24 -148.55 REMARK 500 3 VAL A 483 -40.10 -133.52 REMARK 500 3 ASP A 485 102.32 -51.58 REMARK 500 3 GLU A 492 52.34 -97.89 REMARK 500 3 ILE A 531 139.55 -172.34 REMARK 500 3 MET A 537 68.03 -176.37 REMARK 500 3 PRO A 538 -177.51 -69.83 REMARK 500 3 PHE A 545 45.30 -87.37 REMARK 500 3 PRO A 554 78.65 -69.82 REMARK 500 3 ASN A 556 46.72 -147.95 REMARK 500 3 ASP A 562 129.55 -179.20 REMARK 500 4 VAL A 483 -40.88 -136.77 REMARK 500 4 ASP A 485 97.44 -58.90 REMARK 500 4 GLU A 492 51.89 -100.37 REMARK 500 4 SER A 527 31.41 -145.02 REMARK 500 4 ILE A 531 143.87 -173.74 REMARK 500 4 MET A 537 67.95 -176.31 REMARK 500 4 PRO A 538 -176.02 -69.74 REMARK 500 4 PHE A 545 45.39 -87.59 REMARK 500 4 PRO A 554 75.68 -69.74 REMARK 500 4 ASN A 556 62.23 -152.47 REMARK 500 5 ALA A 481 -169.77 -102.51 REMARK 500 5 VAL A 483 -41.68 -149.62 REMARK 500 5 ASP A 485 94.44 -61.83 REMARK 500 5 GLU A 492 51.48 -97.88 REMARK 500 5 ILE A 531 143.53 -173.93 REMARK 500 5 MET A 537 67.74 -176.62 REMARK 500 5 PHE A 545 45.45 -88.46 REMARK 500 5 PRO A 554 74.27 -69.77 REMARK 500 5 ASN A 556 56.95 -153.17 REMARK 500 6 ALA A 481 -169.90 -169.17 REMARK 500 6 VAL A 483 -39.96 -133.19 REMARK 500 6 ASP A 485 102.18 -51.94 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36004 RELATED DB: BMRB DBREF 5B88 A 482 564 UNP P0A9P6 DEAD_ECOLI 482 564 SEQADV 5B88 MET A 480 UNP P0A9P6 EXPRESSION TAG SEQADV 5B88 ALA A 481 UNP P0A9P6 EXPRESSION TAG SEQRES 1 A 85 MET ALA ASP VAL GLY ASP MET GLN LEU TYR ARG ILE GLU SEQRES 2 A 85 VAL GLY ARG ASP ASP GLY VAL GLU VAL ARG HIS ILE VAL SEQRES 3 A 85 GLY ALA ILE ALA ASN GLU GLY ASP ILE SER SER ARG TYR SEQRES 4 A 85 ILE GLY ASN ILE LYS LEU PHE ALA SER HIS SER THR ILE SEQRES 5 A 85 GLU LEU PRO LYS GLY MET PRO GLY GLU VAL LEU GLN HIS SEQRES 6 A 85 PHE THR ARG THR ARG ILE LEU ASN LYS PRO MET ASN MET SEQRES 7 A 85 GLN LEU LEU GLY ASP ALA GLN HELIX 1 AA1 GLU A 500 GLY A 512 1 13 HELIX 2 AA2 GLU A 540 PHE A 545 1 6 SHEET 1 AA1 3 SER A 529 ILE A 531 0 SHEET 2 AA1 3 TYR A 489 ILE A 491 -1 N ILE A 491 O SER A 529 SHEET 3 AA1 3 GLN A 558 LEU A 559 -1 O GLN A 558 N ARG A 490 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1