HEADER LYASE 20-APR-15 5B8F TITLE X-RAY CRYSTAL STRUCTURE OF A 2-C-METHYL-D-ERYTHRITOL 2,4- TITLE 2 CYCLODIPHOSPHATE SYNTHASE FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PSAEA.01620.A.B1; COMPND 5 SYNONYM: MECPS; COMPND 6 EC: 4.6.1.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / SOURCE 3 PAO1 / 1C / PRS 101 / LMG 12228); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 6 GENE: ISPF, PA3627; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSAEA.01620.A.B1 KEYWDS SSGCID, PSUEDOMONAS AERUGINOSA, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-SEP-23 5B8F 1 LINK REVDAT 3 18-DEC-19 5B8F 1 REMARK REVDAT 2 06-SEP-17 5B8F 1 SOURCE REMARK REVDAT 1 06-MAY-15 5B8F 0 JRNL AUTH SSGCID,J.W.FAIRMAN,D.M.DRANOW,D.LORIMER,T.E.EDWARDS JRNL TITL X-RAY CRYSTAL STRUCTURE OF A 2-C-METHYL-D-ERYTHRITOL JRNL TITL 2 2,4-CYCLODIPHOSPHATE SYNTHASE FROM PSEUDOMONAS AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 79287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9933 - 4.4005 0.99 2899 139 0.1606 0.1542 REMARK 3 2 4.4005 - 3.4937 1.00 2788 134 0.1329 0.1510 REMARK 3 3 3.4937 - 3.0523 1.00 2734 155 0.1418 0.1759 REMARK 3 4 3.0523 - 2.7733 1.00 2744 125 0.1542 0.1916 REMARK 3 5 2.7733 - 2.5746 1.00 2729 141 0.1526 0.1820 REMARK 3 6 2.5746 - 2.4228 1.00 2696 166 0.1437 0.1669 REMARK 3 7 2.4228 - 2.3015 1.00 2704 128 0.1385 0.1620 REMARK 3 8 2.3015 - 2.2013 1.00 2718 128 0.1299 0.1497 REMARK 3 9 2.2013 - 2.1166 1.00 2642 159 0.1230 0.1550 REMARK 3 10 2.1166 - 2.0436 1.00 2707 143 0.1208 0.1603 REMARK 3 11 2.0436 - 1.9797 1.00 2685 145 0.1282 0.1599 REMARK 3 12 1.9797 - 1.9231 1.00 2703 117 0.1314 0.1724 REMARK 3 13 1.9231 - 1.8725 1.00 2689 119 0.1312 0.1898 REMARK 3 14 1.8725 - 1.8268 1.00 2667 138 0.1263 0.1578 REMARK 3 15 1.8268 - 1.7853 1.00 2665 164 0.1293 0.1848 REMARK 3 16 1.7853 - 1.7473 1.00 2674 135 0.1212 0.1819 REMARK 3 17 1.7473 - 1.7123 1.00 2676 128 0.1263 0.1737 REMARK 3 18 1.7123 - 1.6800 1.00 2658 141 0.1286 0.1763 REMARK 3 19 1.6800 - 1.6500 1.00 2661 141 0.1264 0.1731 REMARK 3 20 1.6500 - 1.6220 1.00 2669 149 0.1240 0.1983 REMARK 3 21 1.6220 - 1.5959 1.00 2660 160 0.1212 0.1615 REMARK 3 22 1.5959 - 1.5713 1.00 2643 128 0.1272 0.1776 REMARK 3 23 1.5713 - 1.5482 1.00 2669 151 0.1279 0.1722 REMARK 3 24 1.5482 - 1.5264 1.00 2644 145 0.1340 0.1929 REMARK 3 25 1.5264 - 1.5058 1.00 2687 130 0.1362 0.2061 REMARK 3 26 1.5058 - 1.4862 1.00 2634 137 0.1471 0.1975 REMARK 3 27 1.4862 - 1.4676 1.00 2666 138 0.1484 0.1768 REMARK 3 28 1.4676 - 1.4500 1.00 2650 142 0.1582 0.2047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3829 REMARK 3 ANGLE : 1.253 5238 REMARK 3 CHIRALITY : 0.066 606 REMARK 3 PLANARITY : 0.006 677 REMARK 3 DIHEDRAL : 15.825 1376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-15. REMARK 100 THE DEPOSITION ID IS D_1001200002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.310 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1GX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS C12: 12.5% PEG-1000, 12.5% REMARK 280 PEG-3350, 12.5% MPD, 0.1M BICINE/TRIZMA BASE, PH=8.5, 0.03M EACH REMARK 280 SODIUM NITRATE, DISODIUM HYDROGEN PHOSPHATE, AMMONIUM SULFATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.28000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 HIS C -5 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C -4 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C -3 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C -2 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C -1 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 0 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 34 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 THR C 64 OG1 CG2 REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 LYS C 104 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C5P A 202 O HOH A 476 2.07 REMARK 500 O HOH A 473 O HOH C 437 2.10 REMARK 500 OD1 ASP B 125 O HOH B 511 2.11 REMARK 500 O HOH A 437 O HOH B 470 2.11 REMARK 500 OG1 THR C 132 O HOH C 457 2.12 REMARK 500 OD1 ASP C 125 O HOH C 488 2.18 REMARK 500 OD1 ASP A 8 O HOH A 473 2.18 REMARK 500 OG1 THR B 132 O HOH B 301 2.19 REMARK 500 O HOH A 475 O HOH B 508 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 35 -162.54 -78.60 REMARK 500 SER C 35 -128.70 -123.39 REMARK 500 SER C 35 -129.45 -122.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 407 DISTANCE = 6.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD2 REMARK 620 2 HOH B 491 O 104.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA C -6 O REMARK 620 2 ASP C 8 OD2 60.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C5P A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C5P B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C5P C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-PSAEA.01620.A RELATED DB: TARGETTRACK DBREF 5B8F A 1 157 UNP P57708 ISPF_PSEAE 1 157 DBREF 5B8F B 1 157 UNP P57708 ISPF_PSEAE 1 157 DBREF 5B8F C 1 157 UNP P57708 ISPF_PSEAE 1 157 SEQADV 5B8F ALA A -6 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS A -5 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS A -4 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS A -3 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS A -2 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS A -1 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS A 0 UNP P57708 EXPRESSION TAG SEQADV 5B8F ALA B -6 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS B -5 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS B -4 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS B -3 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS B -2 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS B -1 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS B 0 UNP P57708 EXPRESSION TAG SEQADV 5B8F ALA C -6 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS C -5 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS C -4 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS C -3 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS C -2 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS C -1 UNP P57708 EXPRESSION TAG SEQADV 5B8F HIS C 0 UNP P57708 EXPRESSION TAG SEQRES 1 A 164 ALA HIS HIS HIS HIS HIS HIS MET ARG ILE GLY HIS GLY SEQRES 2 A 164 TYR ASP VAL HIS ARG PHE GLY GLU GLY ASP PHE ILE THR SEQRES 3 A 164 LEU GLY GLY VAL ARG ILE PRO HIS LYS HIS GLY LEU VAL SEQRES 4 A 164 ALA HIS SER ASP GLY ASP VAL LEU LEU HIS ALA LEU SER SEQRES 5 A 164 ASP ALA LEU LEU GLY ALA ALA ALA LEU GLY ASP ILE GLY SEQRES 6 A 164 LYS HIS PHE PRO ASP THR ASP PRO ARG PHE LYS GLY ALA SEQRES 7 A 164 ASP SER ARG ALA LEU LEU ARG HIS VAL VAL ALA ILE VAL SEQRES 8 A 164 ALA GLU LYS GLY TRP LYS VAL GLY ASN VAL ASP ALA THR SEQRES 9 A 164 ILE VAL ALA GLN ALA PRO LYS MET ALA PRO HIS ILE GLU SEQRES 10 A 164 THR MET ARG GLY LEU ILE ALA GLU ASP LEU GLY VAL ALA SEQRES 11 A 164 VAL ASP GLN VAL ASN VAL LYS ALA THR THR THR GLU ARG SEQRES 12 A 164 LEU GLY PHE THR GLY ARG GLU GLU GLY ILE ALA VAL HIS SEQRES 13 A 164 ALA VAL ALA LEU LEU MET ALA ARG SEQRES 1 B 164 ALA HIS HIS HIS HIS HIS HIS MET ARG ILE GLY HIS GLY SEQRES 2 B 164 TYR ASP VAL HIS ARG PHE GLY GLU GLY ASP PHE ILE THR SEQRES 3 B 164 LEU GLY GLY VAL ARG ILE PRO HIS LYS HIS GLY LEU VAL SEQRES 4 B 164 ALA HIS SER ASP GLY ASP VAL LEU LEU HIS ALA LEU SER SEQRES 5 B 164 ASP ALA LEU LEU GLY ALA ALA ALA LEU GLY ASP ILE GLY SEQRES 6 B 164 LYS HIS PHE PRO ASP THR ASP PRO ARG PHE LYS GLY ALA SEQRES 7 B 164 ASP SER ARG ALA LEU LEU ARG HIS VAL VAL ALA ILE VAL SEQRES 8 B 164 ALA GLU LYS GLY TRP LYS VAL GLY ASN VAL ASP ALA THR SEQRES 9 B 164 ILE VAL ALA GLN ALA PRO LYS MET ALA PRO HIS ILE GLU SEQRES 10 B 164 THR MET ARG GLY LEU ILE ALA GLU ASP LEU GLY VAL ALA SEQRES 11 B 164 VAL ASP GLN VAL ASN VAL LYS ALA THR THR THR GLU ARG SEQRES 12 B 164 LEU GLY PHE THR GLY ARG GLU GLU GLY ILE ALA VAL HIS SEQRES 13 B 164 ALA VAL ALA LEU LEU MET ALA ARG SEQRES 1 C 164 ALA HIS HIS HIS HIS HIS HIS MET ARG ILE GLY HIS GLY SEQRES 2 C 164 TYR ASP VAL HIS ARG PHE GLY GLU GLY ASP PHE ILE THR SEQRES 3 C 164 LEU GLY GLY VAL ARG ILE PRO HIS LYS HIS GLY LEU VAL SEQRES 4 C 164 ALA HIS SER ASP GLY ASP VAL LEU LEU HIS ALA LEU SER SEQRES 5 C 164 ASP ALA LEU LEU GLY ALA ALA ALA LEU GLY ASP ILE GLY SEQRES 6 C 164 LYS HIS PHE PRO ASP THR ASP PRO ARG PHE LYS GLY ALA SEQRES 7 C 164 ASP SER ARG ALA LEU LEU ARG HIS VAL VAL ALA ILE VAL SEQRES 8 C 164 ALA GLU LYS GLY TRP LYS VAL GLY ASN VAL ASP ALA THR SEQRES 9 C 164 ILE VAL ALA GLN ALA PRO LYS MET ALA PRO HIS ILE GLU SEQRES 10 C 164 THR MET ARG GLY LEU ILE ALA GLU ASP LEU GLY VAL ALA SEQRES 11 C 164 VAL ASP GLN VAL ASN VAL LYS ALA THR THR THR GLU ARG SEQRES 12 C 164 LEU GLY PHE THR GLY ARG GLU GLU GLY ILE ALA VAL HIS SEQRES 13 C 164 ALA VAL ALA LEU LEU MET ALA ARG HET MG A 201 1 HET C5P A 202 21 HET MPD A 203 8 HET MG B 201 1 HET C5P B 202 21 HET PO4 B 203 5 HET PO4 B 204 5 HET PO4 B 205 5 HET PO4 B 206 5 HET MG C 201 1 HET C5P C 202 21 HETNAM MG MAGNESIUM ION HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PO4 PHOSPHATE ION FORMUL 4 MG 3(MG 2+) FORMUL 5 C5P 3(C9 H14 N3 O8 P) FORMUL 6 MPD C6 H14 O2 FORMUL 9 PO4 4(O4 P 3-) FORMUL 15 HOH *589(H2 O) HELIX 1 AA1 ASP A 38 ALA A 52 1 15 HELIX 2 AA2 ASP A 56 PHE A 61 1 6 HELIX 3 AA3 ASP A 65 LYS A 69 5 5 HELIX 4 AA4 ASP A 72 LYS A 87 1 16 HELIX 5 AA5 MET A 105 PRO A 107 5 3 HELIX 6 AA6 HIS A 108 GLY A 121 1 14 HELIX 7 AA7 ALA A 123 ASP A 125 5 3 HELIX 8 AA8 LEU A 137 ARG A 142 1 6 HELIX 9 AA9 ASP B 38 ALA B 52 1 15 HELIX 10 AB1 ASP B 56 PHE B 61 1 6 HELIX 11 AB2 ASP B 65 LYS B 69 5 5 HELIX 12 AB3 ASP B 72 LYS B 87 1 16 HELIX 13 AB4 MET B 105 PRO B 107 5 3 HELIX 14 AB5 HIS B 108 GLY B 121 1 14 HELIX 15 AB6 ALA B 123 ASP B 125 5 3 HELIX 16 AB7 LEU B 137 ARG B 142 1 6 HELIX 17 AB8 ASP C 38 ALA C 52 1 15 HELIX 18 AB9 ASP C 56 PHE C 61 1 6 HELIX 19 AC1 ASP C 65 LYS C 69 5 5 HELIX 20 AC2 ASP C 72 LYS C 87 1 16 HELIX 21 AC3 MET C 105 PRO C 107 5 3 HELIX 22 AC4 HIS C 108 GLY C 121 1 14 HELIX 23 AC5 ALA C 123 ASP C 125 5 3 HELIX 24 AC6 LEU C 137 ARG C 142 1 6 SHEET 1 AA1 5 GLY A 30 LEU A 31 0 SHEET 2 AA1 5 MET A 1 GLY A 13 -1 N GLY A 13 O GLY A 30 SHEET 3 AA1 5 GLY A 145 ALA A 156 -1 O LEU A 154 N ARG A 2 SHEET 4 AA1 5 TRP A 89 VAL A 99 -1 N VAL A 99 O ALA A 147 SHEET 5 AA1 5 VAL A 127 THR A 132 1 O LYS A 130 N ILE A 98 SHEET 1 AA2 2 PHE A 17 LEU A 20 0 SHEET 2 AA2 2 VAL A 23 PRO A 26 -1 O ILE A 25 N ILE A 18 SHEET 1 AA3 5 GLY B 30 LEU B 31 0 SHEET 2 AA3 5 MET B 1 GLY B 13 -1 N GLY B 13 O GLY B 30 SHEET 3 AA3 5 GLY B 145 ALA B 156 -1 O ALA B 150 N GLY B 6 SHEET 4 AA3 5 TRP B 89 VAL B 99 -1 N VAL B 99 O ALA B 147 SHEET 5 AA3 5 VAL B 127 THR B 132 1 O LYS B 130 N ILE B 98 SHEET 1 AA4 2 PHE B 17 LEU B 20 0 SHEET 2 AA4 2 VAL B 23 PRO B 26 -1 O ILE B 25 N ILE B 18 SHEET 1 AA5 5 GLY C 30 LEU C 31 0 SHEET 2 AA5 5 MET C 1 GLY C 13 -1 N GLY C 13 O GLY C 30 SHEET 3 AA5 5 GLY C 145 ALA C 156 -1 O LEU C 154 N ARG C 2 SHEET 4 AA5 5 TRP C 89 VAL C 99 -1 N VAL C 99 O ALA C 147 SHEET 5 AA5 5 VAL C 127 THR C 132 1 O LYS C 130 N ILE C 98 SHEET 1 AA6 2 PHE C 17 LEU C 20 0 SHEET 2 AA6 2 VAL C 23 PRO C 26 -1 O ILE C 25 N ILE C 18 LINK OD2AASP A 8 MG MG A 201 1555 1555 2.05 LINK OD2 ASP B 8 MG MG B 201 1555 1555 2.05 LINK MG MG B 201 O HOH B 491 1555 1555 1.94 LINK O ALA C -6 MG MG C 201 1555 4555 2.43 LINK OD2 ASP C 8 MG MG C 201 1555 1555 2.02 CISPEP 1 ALA A 102 PRO A 103 0 -8.29 CISPEP 2 ALA B 102 PRO B 103 0 -3.50 CISPEP 3 ALA C 102 PRO C 103 0 -9.27 SITE 1 AC1 3 ASP A 8 HIS A 10 HIS A 42 SITE 1 AC2 13 ALA A 100 PRO A 103 LYS A 104 MET A 105 SITE 2 AC2 13 ALA A 106 ALA A 131 THR A 132 THR A 133 SITE 3 AC2 13 HOH A 324 HOH A 418 HOH A 437 HOH A 476 SITE 4 AC2 13 ASP B 56 SITE 1 AC3 7 ARG A 67 HOH A 307 HOH A 308 HOH A 322 SITE 2 AC3 7 ARG B 67 ALA B 75 HOH B 313 SITE 1 AC4 4 ASP B 8 HIS B 10 HIS B 42 HOH B 491 SITE 1 AC5 15 ALA B 100 PRO B 103 MET B 105 ALA B 106 SITE 2 AC5 15 ALA B 131 THR B 132 THR B 133 HOH B 304 SITE 3 AC5 15 HOH B 305 HOH B 308 HOH B 321 HOH B 503 SITE 4 AC5 15 HOH B 504 ASP C 56 HOH C 329 SITE 1 AC6 10 GLY A 138 ARG A 142 GLY B 138 PHE B 139 SITE 2 AC6 10 ARG B 142 PO4 B 206 HOH B 390 HOH B 403 SITE 3 AC6 10 GLY C 138 ARG C 142 SITE 1 AC7 6 HIS A 149 HIS B 149 HOH B 405 HOH B 423 SITE 2 AC7 6 HOH B 447 HIS C 149 SITE 1 AC8 3 ARG B 157 HOH B 440 HOH B 507 SITE 1 AC9 4 ARG A 142 ARG B 142 PO4 B 203 HOH B 331 SITE 1 AD1 4 ALA C -6 ASP C 8 HIS C 10 HIS C 42 SITE 1 AD2 13 ASP A 56 GLY A 58 LYS A 59 ALA C 100 SITE 2 AD2 13 PRO C 103 LYS C 104 MET C 105 ALA C 106 SITE 3 AD2 13 ALA C 131 THR C 132 THR C 133 HOH C 390 SITE 4 AD2 13 HOH C 456 CRYST1 80.560 100.210 54.810 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018245 0.00000