HEADER MEMBRANE PROTEIN 12-SEP-17 5BJU TITLE X-RAY STRUCTURE OF THE PGLF DEHYDRATASE FROM CAMPYLOBACTER JEJUNI IN TITLE 2 COMPLEX WITH UDP AND NAD(H) COMPND MOL_ID: 1; COMPND 2 MOLECULE: WLAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 244-590; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: WLAL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 4, 6-DEHYDRATASE, CAMPYLOBACTER, DEOXYSUGAR, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.RIEGERT,J.B.THODEN,H.M.HOLDEN REVDAT 5 06-MAR-24 5BJU 1 REMARK LINK REVDAT 4 01-JAN-20 5BJU 1 REMARK REVDAT 3 06-DEC-17 5BJU 1 REMARK REVDAT 2 29-NOV-17 5BJU 1 JRNL REVDAT 1 08-NOV-17 5BJU 0 JRNL AUTH A.S.RIEGERT,J.B.THODEN,I.C.SCHOENHOFEN,D.C.WATSON,N.M.YOUNG, JRNL AUTH 2 P.A.TIPTON,H.M.HOLDEN JRNL TITL STRUCTURAL AND BIOCHEMICAL INVESTIGATION OF PGLF FROM JRNL TITL 2 CAMPYLOBACTER JEJUNI REVEALS A NEW MECHANISM FOR A MEMBER OF JRNL TITL 3 THE SHORT CHAIN DEHYDROGENASE/REDUCTASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 56 6030 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 29053280 JRNL DOI 10.1021/ACS.BIOCHEM.7B00910 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 52185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3626 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.795 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5566 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5546 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7544 ; 1.701 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12850 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 688 ; 6.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;43.642 ;26.256 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1068 ;15.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 895 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6046 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1101 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2725 ; 1.771 ; 1.534 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2724 ; 1.750 ; 1.533 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3407 ; 2.627 ; 2.285 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3408 ; 2.627 ; 2.286 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2841 ; 2.858 ; 1.827 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2841 ; 2.857 ; 1.827 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4133 ; 4.554 ; 2.594 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6726 ; 6.065 ;12.774 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6727 ; 6.064 ;12.776 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : 0.25300 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG-5000, 2% MPD, 10 MM UDP, 100 REMARK 280 MM MES, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.56750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.10400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.94100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.10400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.56750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.94100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 244 REMARK 465 ARG A 245 REMARK 465 ASP A 246 REMARK 465 ILE A 247 REMARK 465 GLU A 588 REMARK 465 GLY A 589 REMARK 465 ILE A 590 REMARK 465 ALA A 591 REMARK 465 ALA A 592 REMARK 465 GLY A 593 REMARK 465 PHE A 594 REMARK 465 ASN A 595 REMARK 465 ARG A 596 REMARK 465 ILE A 597 REMARK 465 PRO A 598 REMARK 465 ALA A 599 REMARK 465 ALA A 600 REMARK 465 ALA A 601 REMARK 465 LEU A 602 REMARK 465 GLU A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 465 HIS A 609 REMARK 465 ALA B 244 REMARK 465 ARG B 245 REMARK 465 ASP B 246 REMARK 465 ILE B 247 REMARK 465 ARG B 512 REMARK 465 ASN B 513 REMARK 465 LYS B 587 REMARK 465 GLU B 588 REMARK 465 GLY B 589 REMARK 465 ILE B 590 REMARK 465 ALA B 591 REMARK 465 ALA B 592 REMARK 465 GLY B 593 REMARK 465 PHE B 594 REMARK 465 ASN B 595 REMARK 465 ARG B 596 REMARK 465 ILE B 597 REMARK 465 PRO B 598 REMARK 465 ALA B 599 REMARK 465 ALA B 600 REMARK 465 ALA B 601 REMARK 465 LEU B 602 REMARK 465 GLU B 603 REMARK 465 HIS B 604 REMARK 465 HIS B 605 REMARK 465 HIS B 606 REMARK 465 HIS B 607 REMARK 465 HIS B 608 REMARK 465 HIS B 609 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 511 CG OD1 ND2 REMARK 470 GLU B 570 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 524 O HOH B 801 2.02 REMARK 500 NE2 HIS B 356 O HOH B 802 2.04 REMARK 500 OE1 GLN B 542 O HOH B 803 2.06 REMARK 500 O HOH A 872 O HOH A 1003 2.06 REMARK 500 O HOH A 902 O HOH A 1017 2.15 REMARK 500 O HOH B 917 O HOH B 928 2.18 REMARK 500 O HOH A 821 O HOH A 1026 2.19 REMARK 500 OE2 GLU B 574 O HOH B 804 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 938 O HOH B 925 3444 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 394 -161.55 -122.91 REMARK 500 HIS A 459 134.83 -171.77 REMARK 500 ASN A 511 7.81 50.85 REMARK 500 ARG A 512 59.35 -107.16 REMARK 500 ASP B 271 16.98 59.21 REMARK 500 SER B 394 -161.83 -123.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 705 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 973 O REMARK 620 2 ASP B 261 OD1 162.3 REMARK 620 3 SER B 263 OG 80.1 91.9 REMARK 620 4 HOH B 943 O 92.5 73.4 100.9 REMARK 620 5 HOH B 968 O 91.8 103.6 86.9 171.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 320 O REMARK 620 2 ILE B 323 O 89.4 REMARK 620 3 HOH B 915 O 98.6 104.2 REMARK 620 4 HOH B 983 O 163.9 87.4 97.5 REMARK 620 5 HOH B 990 O 86.2 76.6 175.1 77.7 REMARK 620 6 HOH B1005 O 92.7 160.1 95.0 85.1 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 705 DBREF 5BJU A 244 590 UNP O86159 O86159_CAMJU 244 590 DBREF 5BJU B 244 590 UNP O86159 O86159_CAMJU 244 590 SEQADV 5BJU ALA A 591 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA A 592 UNP O86159 EXPRESSION TAG SEQADV 5BJU GLY A 593 UNP O86159 EXPRESSION TAG SEQADV 5BJU PHE A 594 UNP O86159 EXPRESSION TAG SEQADV 5BJU ASN A 595 UNP O86159 EXPRESSION TAG SEQADV 5BJU ARG A 596 UNP O86159 EXPRESSION TAG SEQADV 5BJU ILE A 597 UNP O86159 EXPRESSION TAG SEQADV 5BJU PRO A 598 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA A 599 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA A 600 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA A 601 UNP O86159 EXPRESSION TAG SEQADV 5BJU LEU A 602 UNP O86159 EXPRESSION TAG SEQADV 5BJU GLU A 603 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS A 604 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS A 605 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS A 606 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS A 607 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS A 608 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS A 609 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA B 591 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA B 592 UNP O86159 EXPRESSION TAG SEQADV 5BJU GLY B 593 UNP O86159 EXPRESSION TAG SEQADV 5BJU PHE B 594 UNP O86159 EXPRESSION TAG SEQADV 5BJU ASN B 595 UNP O86159 EXPRESSION TAG SEQADV 5BJU ARG B 596 UNP O86159 EXPRESSION TAG SEQADV 5BJU ILE B 597 UNP O86159 EXPRESSION TAG SEQADV 5BJU PRO B 598 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA B 599 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA B 600 UNP O86159 EXPRESSION TAG SEQADV 5BJU ALA B 601 UNP O86159 EXPRESSION TAG SEQADV 5BJU LEU B 602 UNP O86159 EXPRESSION TAG SEQADV 5BJU GLU B 603 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS B 604 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS B 605 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS B 606 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS B 607 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS B 608 UNP O86159 EXPRESSION TAG SEQADV 5BJU HIS B 609 UNP O86159 EXPRESSION TAG SEQRES 1 A 366 ALA ARG ASP ILE SER ILE GLU ASP LEU LEU ALA ARG LYS SEQRES 2 A 366 PRO LYS ASP LEU ASP ASP SER ALA VAL ALA ALA PHE LEU SEQRES 3 A 366 LYS ASP LYS VAL VAL LEU VAL SER GLY ALA GLY GLY THR SEQRES 4 A 366 ILE GLY SER GLU LEU CYS LYS GLN CYS ILE LYS PHE GLY SEQRES 5 A 366 ALA LYS HIS LEU ILE MET VAL ASP HIS SER GLU TYR ASN SEQRES 6 A 366 LEU TYR LYS ILE ASN ASP ASP LEU ASN LEU TYR LYS GLU SEQRES 7 A 366 LYS ILE THR PRO ILE LEU LEU SER ILE LEU ASP LYS GLN SEQRES 8 A 366 SER LEU ASP GLU VAL LEU LYS THR TYR LYS PRO GLU LEU SEQRES 9 A 366 ILE LEU HIS ALA ALA ALA TYR LYS HIS VAL PRO LEU CYS SEQRES 10 A 366 GLU GLN ASN PRO HIS SER ALA VAL ILE ASN ASN ILE LEU SEQRES 11 A 366 GLY THR LYS ILE LEU CYS ASP SER ALA LYS GLU ASN LYS SEQRES 12 A 366 VAL ALA LYS PHE VAL MET ILE SER THR ASP LYS ALA VAL SEQRES 13 A 366 ARG PRO THR ASN ILE MET GLY CYS THR LYS ARG VAL CYS SEQRES 14 A 366 GLU LEU TYR THR LEU SER MET SER ASP GLU ASN PHE GLU SEQRES 15 A 366 VAL ALA CYS VAL ARG PHE GLY ASN VAL LEU GLY SER SER SEQRES 16 A 366 GLY SER VAL ILE PRO LYS PHE LYS ALA GLN ILE ALA ASN SEQRES 17 A 366 ASN GLU PRO LEU THR LEU THR HIS PRO ASP ILE VAL ARG SEQRES 18 A 366 TYR PHE MET LEU VAL ALA GLU ALA VAL GLN LEU VAL LEU SEQRES 19 A 366 GLN ALA GLY ALA ILE ALA LYS GLY GLY GLU LEU PHE VAL SEQRES 20 A 366 LEU ASP MET GLY LYS PRO VAL LYS ILE ILE ASP LEU ALA SEQRES 21 A 366 LYS LYS MET LEU LEU LEU SER ASN ARG ASN ASP LEU GLU SEQRES 22 A 366 ILE LYS ILE THR GLY LEU ARG LYS GLY GLU LYS LEU TYR SEQRES 23 A 366 GLU GLU LEU LEU ILE ASP GLU ASN ASP ALA LYS THR GLN SEQRES 24 A 366 TYR GLU SER ILE PHE VAL ALA LYS ASN GLU LYS VAL ASP SEQRES 25 A 366 LEU ASP TRP LEU ASN LYS GLU ILE GLU ASN LEU GLN ILE SEQRES 26 A 366 CYS GLU ASP ILE SER GLU ALA LEU LEU LYS ILE VAL PRO SEQRES 27 A 366 GLU PHE LYS HIS ASN LYS GLU GLY ILE ALA ALA GLY PHE SEQRES 28 A 366 ASN ARG ILE PRO ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 29 A 366 HIS HIS SEQRES 1 B 366 ALA ARG ASP ILE SER ILE GLU ASP LEU LEU ALA ARG LYS SEQRES 2 B 366 PRO LYS ASP LEU ASP ASP SER ALA VAL ALA ALA PHE LEU SEQRES 3 B 366 LYS ASP LYS VAL VAL LEU VAL SER GLY ALA GLY GLY THR SEQRES 4 B 366 ILE GLY SER GLU LEU CYS LYS GLN CYS ILE LYS PHE GLY SEQRES 5 B 366 ALA LYS HIS LEU ILE MET VAL ASP HIS SER GLU TYR ASN SEQRES 6 B 366 LEU TYR LYS ILE ASN ASP ASP LEU ASN LEU TYR LYS GLU SEQRES 7 B 366 LYS ILE THR PRO ILE LEU LEU SER ILE LEU ASP LYS GLN SEQRES 8 B 366 SER LEU ASP GLU VAL LEU LYS THR TYR LYS PRO GLU LEU SEQRES 9 B 366 ILE LEU HIS ALA ALA ALA TYR LYS HIS VAL PRO LEU CYS SEQRES 10 B 366 GLU GLN ASN PRO HIS SER ALA VAL ILE ASN ASN ILE LEU SEQRES 11 B 366 GLY THR LYS ILE LEU CYS ASP SER ALA LYS GLU ASN LYS SEQRES 12 B 366 VAL ALA LYS PHE VAL MET ILE SER THR ASP LYS ALA VAL SEQRES 13 B 366 ARG PRO THR ASN ILE MET GLY CYS THR LYS ARG VAL CYS SEQRES 14 B 366 GLU LEU TYR THR LEU SER MET SER ASP GLU ASN PHE GLU SEQRES 15 B 366 VAL ALA CYS VAL ARG PHE GLY ASN VAL LEU GLY SER SER SEQRES 16 B 366 GLY SER VAL ILE PRO LYS PHE LYS ALA GLN ILE ALA ASN SEQRES 17 B 366 ASN GLU PRO LEU THR LEU THR HIS PRO ASP ILE VAL ARG SEQRES 18 B 366 TYR PHE MET LEU VAL ALA GLU ALA VAL GLN LEU VAL LEU SEQRES 19 B 366 GLN ALA GLY ALA ILE ALA LYS GLY GLY GLU LEU PHE VAL SEQRES 20 B 366 LEU ASP MET GLY LYS PRO VAL LYS ILE ILE ASP LEU ALA SEQRES 21 B 366 LYS LYS MET LEU LEU LEU SER ASN ARG ASN ASP LEU GLU SEQRES 22 B 366 ILE LYS ILE THR GLY LEU ARG LYS GLY GLU LYS LEU TYR SEQRES 23 B 366 GLU GLU LEU LEU ILE ASP GLU ASN ASP ALA LYS THR GLN SEQRES 24 B 366 TYR GLU SER ILE PHE VAL ALA LYS ASN GLU LYS VAL ASP SEQRES 25 B 366 LEU ASP TRP LEU ASN LYS GLU ILE GLU ASN LEU GLN ILE SEQRES 26 B 366 CYS GLU ASP ILE SER GLU ALA LEU LEU LYS ILE VAL PRO SEQRES 27 B 366 GLU PHE LYS HIS ASN LYS GLU GLY ILE ALA ALA GLY PHE SEQRES 28 B 366 ASN ARG ILE PRO ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 29 B 366 HIS HIS HET UDP A 701 25 HET NAD A 702 44 HET UDP B 701 25 HET NAD B 702 44 HET EDO B 703 4 HET NA B 704 1 HET NA B 705 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 EDO C2 H6 O2 FORMUL 8 NA 2(NA 1+) FORMUL 10 HOH *489(H2 O) HELIX 1 AA1 SER A 248 ALA A 254 1 7 HELIX 2 AA2 ASP A 261 LYS A 270 1 10 HELIX 3 AA3 GLY A 281 PHE A 294 1 14 HELIX 4 AA4 SER A 305 LEU A 316 1 12 HELIX 5 AA5 ASN A 317 GLU A 321 5 5 HELIX 6 AA6 ASP A 332 LYS A 344 1 13 HELIX 7 AA7 HIS A 356 ASN A 363 1 8 HELIX 8 AA8 ASN A 363 ASN A 385 1 23 HELIX 9 AA9 THR A 395 VAL A 399 5 5 HELIX 10 AB1 ASN A 403 SER A 420 1 18 HELIX 11 AB2 SER A 440 ASN A 451 1 12 HELIX 12 AB3 LEU A 468 ALA A 483 1 16 HELIX 13 AB4 ILE A 499 SER A 510 1 12 HELIX 14 AB5 ASP A 555 CYS A 569 1 15 HELIX 15 AB6 ASP A 571 VAL A 580 1 10 HELIX 16 AB7 ILE B 249 ALA B 254 1 6 HELIX 17 AB8 ASP B 261 LYS B 270 1 10 HELIX 18 AB9 GLY B 281 PHE B 294 1 14 HELIX 19 AC1 SER B 305 LEU B 316 1 12 HELIX 20 AC2 ASN B 317 GLU B 321 5 5 HELIX 21 AC3 ASP B 332 LYS B 344 1 13 HELIX 22 AC4 HIS B 356 ASN B 363 1 8 HELIX 23 AC5 ASN B 363 ASN B 385 1 23 HELIX 24 AC6 THR B 395 VAL B 399 5 5 HELIX 25 AC7 ASN B 403 SER B 420 1 18 HELIX 26 AC8 SER B 440 ASN B 451 1 12 HELIX 27 AC9 LEU B 468 ALA B 483 1 16 HELIX 28 AD1 ILE B 499 SER B 510 1 12 HELIX 29 AD2 ASP B 555 CYS B 569 1 15 HELIX 30 AD3 ASP B 571 VAL B 580 1 10 SHEET 1 AA1 9 ILE A 323 LEU A 327 0 SHEET 2 AA1 9 HIS A 298 ASP A 303 1 N MET A 301 O ILE A 326 SHEET 3 AA1 9 VAL A 273 SER A 277 1 N VAL A 274 O ILE A 300 SHEET 4 AA1 9 LEU A 347 HIS A 350 1 O LEU A 349 N LEU A 275 SHEET 5 AA1 9 LYS A 389 ILE A 393 1 O VAL A 391 N HIS A 350 SHEET 6 AA1 9 GLU A 425 ARG A 430 1 O GLU A 425 N PHE A 390 SHEET 7 AA1 9 GLU A 487 LEU A 491 1 O PHE A 489 N CYS A 428 SHEET 8 AA1 9 ILE A 546 ALA A 549 -1 O ALA A 549 N LEU A 488 SHEET 9 AA1 9 ALA A 539 LYS A 540 -1 N ALA A 539 O VAL A 548 SHEET 1 AA2 2 ASN A 433 VAL A 434 0 SHEET 2 AA2 2 PHE A 466 MET A 467 1 O MET A 467 N ASN A 433 SHEET 1 AA3 2 LEU A 455 LEU A 457 0 SHEET 2 AA3 2 ILE A 517 ILE A 519 1 O LYS A 518 N LEU A 457 SHEET 1 AA4 2 VAL A 463 ARG A 464 0 SHEET 2 AA4 2 VAL A 497 LYS A 498 -1 O VAL A 497 N ARG A 464 SHEET 1 AA5 9 ILE B 323 LEU B 327 0 SHEET 2 AA5 9 HIS B 298 ASP B 303 1 N MET B 301 O ILE B 326 SHEET 3 AA5 9 VAL B 273 SER B 277 1 N VAL B 274 O ILE B 300 SHEET 4 AA5 9 LEU B 347 HIS B 350 1 O LEU B 349 N SER B 277 SHEET 5 AA5 9 LYS B 389 ILE B 393 1 O VAL B 391 N HIS B 350 SHEET 6 AA5 9 GLU B 425 ARG B 430 1 O GLU B 425 N PHE B 390 SHEET 7 AA5 9 GLU B 487 LEU B 491 1 O PHE B 489 N CYS B 428 SHEET 8 AA5 9 ILE B 546 ALA B 549 -1 O ALA B 549 N LEU B 488 SHEET 9 AA5 9 ALA B 539 LYS B 540 -1 N ALA B 539 O VAL B 548 SHEET 1 AA6 2 ASN B 433 VAL B 434 0 SHEET 2 AA6 2 PHE B 466 MET B 467 1 O MET B 467 N ASN B 433 SHEET 1 AA7 2 LEU B 455 LEU B 457 0 SHEET 2 AA7 2 ILE B 517 ILE B 519 1 O LYS B 518 N LEU B 455 SHEET 1 AA8 2 VAL B 463 ARG B 464 0 SHEET 2 AA8 2 VAL B 497 LYS B 498 -1 O VAL B 497 N ARG B 464 LINK O HOH A 973 NA NA B 705 3554 1555 2.57 LINK OD1 ASP B 261 NA NA B 705 1555 1555 2.43 LINK OG SER B 263 NA NA B 705 1555 1555 2.36 LINK O LYS B 320 NA NA B 704 1555 1555 2.43 LINK O ILE B 323 NA NA B 704 1555 1555 2.27 LINK NA NA B 704 O HOH B 915 1555 1555 2.29 LINK NA NA B 704 O HOH B 983 1555 1555 2.25 LINK NA NA B 704 O HOH B 990 1555 1555 2.89 LINK NA NA B 704 O HOH B1005 1555 1555 2.63 LINK NA NA B 705 O HOH B 943 1555 1555 2.49 LINK NA NA B 705 O HOH B 968 1555 1555 2.49 SITE 1 AC1 17 LYS A 397 ASN A 433 SER A 440 VAL A 441 SITE 2 AC1 17 LYS A 444 THR A 456 LEU A 457 THR A 458 SITE 3 AC1 17 ILE A 462 ARG A 464 ARG A 523 GLU A 526 SITE 4 AC1 17 HOH A 817 HOH A 871 HOH A 875 HOH A 942 SITE 5 AC1 17 HOH A 952 SITE 1 AC2 33 GLY A 278 GLY A 280 GLY A 281 THR A 282 SITE 2 AC2 33 ILE A 283 ASP A 303 HIS A 304 SER A 305 SITE 3 AC2 33 ASN A 308 LEU A 328 SER A 329 ILE A 330 SITE 4 AC2 33 ALA A 351 ALA A 352 ALA A 353 LYS A 355 SITE 5 AC2 33 ASN A 370 ILE A 393 SER A 394 LYS A 409 SITE 6 AC2 33 PHE A 431 GLY A 432 ASN A 433 VAL A 434 SITE 7 AC2 33 SER A 437 SER A 438 HOH A 859 HOH A 860 SITE 8 AC2 33 HOH A 874 HOH A 918 HOH A 926 HOH A 981 SITE 9 AC2 33 HOH B 857 SITE 1 AC3 17 LYS B 397 ASN B 433 SER B 440 VAL B 441 SITE 2 AC3 17 LYS B 444 THR B 456 LEU B 457 THR B 458 SITE 3 AC3 17 ILE B 462 ARG B 464 ARG B 523 GLU B 526 SITE 4 AC3 17 HOH B 812 HOH B 860 HOH B 917 HOH B 926 SITE 5 AC3 17 HOH B 958 SITE 1 AC4 33 HOH A 883 GLY B 278 GLY B 280 GLY B 281 SITE 2 AC4 33 THR B 282 ILE B 283 ASP B 303 HIS B 304 SITE 3 AC4 33 SER B 305 ASN B 308 LEU B 328 SER B 329 SITE 4 AC4 33 ILE B 330 ALA B 351 ALA B 352 ALA B 353 SITE 5 AC4 33 LYS B 355 ASN B 370 ILE B 393 SER B 394 SITE 6 AC4 33 LYS B 409 PHE B 431 GLY B 432 VAL B 434 SITE 7 AC4 33 SER B 437 HOH B 813 HOH B 863 HOH B 875 SITE 8 AC4 33 HOH B 897 HOH B 912 HOH B 916 HOH B 923 SITE 9 AC4 33 HOH B 948 SITE 1 AC5 5 GLY B 280 GLY B 281 SER B 438 HOH B 813 SITE 2 AC5 5 HOH B 838 SITE 1 AC6 6 LYS B 320 ILE B 323 HOH B 915 HOH B 983 SITE 2 AC6 6 HOH B 990 HOH B1005 SITE 1 AC7 5 HOH A 973 ASP B 261 SER B 263 HOH B 943 SITE 2 AC7 5 HOH B 968 CRYST1 69.135 107.882 110.208 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009074 0.00000