HEADER OXIDOREDUCTASE 01-JUN-19 5BK9 TITLE AAD-1 BOUND TO THE VANADYL ION AND SUCCINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: (R)-PHENOXYPROPIONATE/ALPHA-KETOGLUTARATE-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RDPA,(R)-DICHLORPROP/(R)-MECOPROP DIOXYGENASE,ALPHA- COMPND 5 KETOGLUTARATE-DEPENDENT DIOXYGENASE,DICHLORPROP/ALPHA-KETOGLUTARATE- COMPND 6 DIOXYGENASE,MECOPROP/ALPHA-KETOGLUTARATE-DIOXYGENASE; COMPND 7 EC: 1.14.11.44; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DELFTIA ACIDOVORANS; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS ACIDOVORANS; SOURCE 4 ORGANISM_TAXID: 80866; SOURCE 5 GENE: RDPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS ARYLOXYALKANOATE DIOXYGENASE, HERBICIDE DEGRADATION, BIOSYNTHETIC KEYWDS 2 PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ONGPIPATTANAKUL,J.R.CHEKAN REVDAT 5 27-SEP-23 5BK9 1 REMARK LINK REVDAT 4 01-JAN-20 5BK9 1 REMARK REVDAT 3 17-JUL-19 5BK9 1 JRNL REVDAT 2 03-JUL-19 5BK9 1 JRNL REVDAT 1 12-JUN-19 5BK9 0 JRNL AUTH J.R.CHEKAN,C.ONGPIPATTANAKUL,T.R.WRIGHT,B.ZHANG, JRNL AUTH 2 J.M.BOLLINGER JR.,L.J.RAJAKOVICH,C.KREBS,R.M.CICCHILLO, JRNL AUTH 3 S.K.NAIR JRNL TITL MOLECULAR BASIS FOR ENANTIOSELECTIVE HERBICIDE DEGRADATION JRNL TITL 2 IMPARTED BY ARYLOXYALKANOATE DIOXYGENASES IN TRANSGENIC JRNL TITL 3 PLANTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 13299 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31209034 JRNL DOI 10.1073/PNAS.1900711116 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 87655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6409 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 327 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4415 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4659 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6367 ; 1.160 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 5.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;35.667 ;22.982 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 742 ;13.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;11.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3640 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2257 ; 0.751 ; 2.133 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2825 ; 1.349 ; 3.194 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2402 ; 0.828 ; 2.243 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7315 ; 4.552 ;29.930 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5BK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1001310066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92316 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1GQW REMARK 200 REMARK 200 REMARK: CUBOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.3 M LI2SO4, AND 0.1 M REMARK 280 BICINE (PH 9.0). LIGANDS WERE SOAKED INTO CRYSTALS., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.95750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.93400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.95750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.93400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.91500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 97.86800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 LEU B 5 REMARK 465 SER B 6 REMARK 465 PRO B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 GLN B 10 REMARK 465 TYR B 175 REMARK 465 GLN B 176 REMARK 465 ALA B 177 REMARK 465 GLN B 178 REMARK 465 ASN B 179 REMARK 465 ARG B 180 REMARK 465 ARG B 181 REMARK 465 PHE B 182 REMARK 465 SER B 183 REMARK 465 ASN B 184 REMARK 465 THR B 185 REMARK 465 SER B 186 REMARK 465 VAL B 187 REMARK 465 LYS B 188 REMARK 465 VAL B 189 REMARK 465 MET B 190 REMARK 465 ASP B 191 REMARK 465 VAL B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 173 OG REMARK 470 LEU B 174 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 682 O HOH B 682 2665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 53 -34.73 72.67 REMARK 500 PHE A 171 19.60 -149.12 REMARK 500 PHE B 12 107.75 59.06 REMARK 500 GLN B 53 -36.52 74.41 REMARK 500 ASP B 78 -90.78 -80.27 REMARK 500 VAL B 170 -60.51 -92.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 767 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 682 DISTANCE = 6.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VVO A 302 V1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 VVO A 302 O1 88.7 REMARK 620 3 ASP A 113 OD1 92.5 100.2 REMARK 620 4 HIS A 270 NE2 85.3 167.7 90.8 REMARK 620 5 SIN A 301 O3 93.7 83.2 173.0 86.5 REMARK 620 6 SIN A 301 O4 150.8 90.2 116.3 89.8 57.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VVO B 301 V1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 111 NE2 REMARK 620 2 VVO B 301 O1 87.1 REMARK 620 3 ASP B 113 OD1 93.6 106.8 REMARK 620 4 HIS B 270 NE2 88.9 161.3 91.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVO B 301 DBREF 5BK9 A 1 295 UNP P83310 RDPA_DELAC 1 295 DBREF 5BK9 B 1 295 UNP P83310 RDPA_DELAC 1 295 SEQRES 1 A 295 MET HIS ALA ALA LEU SER PRO LEU SER GLN ARG PHE GLU SEQRES 2 A 295 ARG ILE ALA VAL GLN PRO LEU THR GLY VAL LEU GLY ALA SEQRES 3 A 295 GLU ILE THR GLY VAL ASP LEU ARG GLU PRO LEU ASP ASP SEQRES 4 A 295 SER THR TRP ASN GLU ILE LEU ASP ALA PHE HIS THR TYR SEQRES 5 A 295 GLN VAL ILE TYR PHE PRO GLY GLN ALA ILE THR ASN GLU SEQRES 6 A 295 GLN HIS ILE ALA PHE SER ARG ARG PHE GLY PRO VAL ASP SEQRES 7 A 295 PRO VAL PRO LEU LEU LYS SER ILE GLU GLY TYR PRO GLU SEQRES 8 A 295 VAL GLN MET ILE ARG ARG GLU ALA ASN GLU SER GLY ARG SEQRES 9 A 295 VAL ILE GLY ASP ASP TRP HIS THR ASP SER THR PHE LEU SEQRES 10 A 295 ASP ALA PRO PRO ALA ALA VAL VAL MET ARG ALA ILE ASP SEQRES 11 A 295 VAL PRO GLU HIS GLY GLY ASP THR GLY PHE LEU SER MET SEQRES 12 A 295 TYR THR ALA TRP GLU THR LEU SER PRO THR MET GLN ALA SEQRES 13 A 295 THR ILE GLU GLY LEU ASN VAL VAL HIS SER ALA THR ARG SEQRES 14 A 295 VAL PHE GLY SER LEU TYR GLN ALA GLN ASN ARG ARG PHE SEQRES 15 A 295 SER ASN THR SER VAL LYS VAL MET ASP VAL ASP ALA GLY SEQRES 16 A 295 ASP ARG GLU THR VAL HIS PRO LEU VAL VAL THR HIS PRO SEQRES 17 A 295 GLY SER GLY ARG LYS GLY LEU TYR VAL ASN GLN VAL TYR SEQRES 18 A 295 CYS GLN ARG ILE GLU GLY MET THR ASP ALA GLU SER LYS SEQRES 19 A 295 PRO LEU LEU GLN PHE LEU TYR GLU HIS ALA THR ARG PHE SEQRES 20 A 295 ASP PHE THR CYS ARG VAL ARG TRP LYS LYS ASP GLN VAL SEQRES 21 A 295 LEU VAL TRP ASP ASN LEU CYS THR MET HIS ARG ALA VAL SEQRES 22 A 295 PRO ASP TYR ALA GLY LYS PHE ARG TYR LEU THR ARG THR SEQRES 23 A 295 THR VAL GLY GLY VAL ARG PRO ALA ARG SEQRES 1 B 295 MET HIS ALA ALA LEU SER PRO LEU SER GLN ARG PHE GLU SEQRES 2 B 295 ARG ILE ALA VAL GLN PRO LEU THR GLY VAL LEU GLY ALA SEQRES 3 B 295 GLU ILE THR GLY VAL ASP LEU ARG GLU PRO LEU ASP ASP SEQRES 4 B 295 SER THR TRP ASN GLU ILE LEU ASP ALA PHE HIS THR TYR SEQRES 5 B 295 GLN VAL ILE TYR PHE PRO GLY GLN ALA ILE THR ASN GLU SEQRES 6 B 295 GLN HIS ILE ALA PHE SER ARG ARG PHE GLY PRO VAL ASP SEQRES 7 B 295 PRO VAL PRO LEU LEU LYS SER ILE GLU GLY TYR PRO GLU SEQRES 8 B 295 VAL GLN MET ILE ARG ARG GLU ALA ASN GLU SER GLY ARG SEQRES 9 B 295 VAL ILE GLY ASP ASP TRP HIS THR ASP SER THR PHE LEU SEQRES 10 B 295 ASP ALA PRO PRO ALA ALA VAL VAL MET ARG ALA ILE ASP SEQRES 11 B 295 VAL PRO GLU HIS GLY GLY ASP THR GLY PHE LEU SER MET SEQRES 12 B 295 TYR THR ALA TRP GLU THR LEU SER PRO THR MET GLN ALA SEQRES 13 B 295 THR ILE GLU GLY LEU ASN VAL VAL HIS SER ALA THR ARG SEQRES 14 B 295 VAL PHE GLY SER LEU TYR GLN ALA GLN ASN ARG ARG PHE SEQRES 15 B 295 SER ASN THR SER VAL LYS VAL MET ASP VAL ASP ALA GLY SEQRES 16 B 295 ASP ARG GLU THR VAL HIS PRO LEU VAL VAL THR HIS PRO SEQRES 17 B 295 GLY SER GLY ARG LYS GLY LEU TYR VAL ASN GLN VAL TYR SEQRES 18 B 295 CYS GLN ARG ILE GLU GLY MET THR ASP ALA GLU SER LYS SEQRES 19 B 295 PRO LEU LEU GLN PHE LEU TYR GLU HIS ALA THR ARG PHE SEQRES 20 B 295 ASP PHE THR CYS ARG VAL ARG TRP LYS LYS ASP GLN VAL SEQRES 21 B 295 LEU VAL TRP ASP ASN LEU CYS THR MET HIS ARG ALA VAL SEQRES 22 B 295 PRO ASP TYR ALA GLY LYS PHE ARG TYR LEU THR ARG THR SEQRES 23 B 295 THR VAL GLY GLY VAL ARG PRO ALA ARG HET SIN A 301 8 HET VVO A 302 2 HET PO4 A 303 5 HET PO4 A 304 5 HET VVO B 301 2 HETNAM SIN SUCCINIC ACID HETNAM VVO OXOVANADIUM(2+) HETNAM PO4 PHOSPHATE ION FORMUL 3 SIN C4 H6 O4 FORMUL 4 VVO 2(O V 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 8 HOH *650(H2 O) HELIX 1 AA1 PRO A 7 PHE A 12 1 6 HELIX 2 AA2 ASP A 38 GLN A 53 1 16 HELIX 3 AA3 THR A 63 ARG A 73 1 11 HELIX 4 AA4 MET A 143 THR A 149 1 7 HELIX 5 AA5 SER A 151 GLU A 159 1 9 HELIX 6 AA6 ALA A 167 GLY A 172 1 6 HELIX 7 AA7 GLY A 172 GLN A 178 1 7 HELIX 8 AA8 ASP A 191 ARG A 197 1 7 HELIX 9 AA9 THR A 229 THR A 245 1 17 HELIX 10 AB1 ARG A 246 ASP A 248 5 3 HELIX 11 AB2 ASP B 38 GLN B 53 1 16 HELIX 12 AB3 THR B 63 ARG B 73 1 11 HELIX 13 AB4 MET B 143 THR B 149 1 7 HELIX 14 AB5 SER B 151 GLU B 159 1 9 HELIX 15 AB6 THR B 229 THR B 245 1 17 HELIX 16 AB7 ARG B 246 ASP B 248 5 3 SHEET 1 AA1 8 ALA A 16 PRO A 19 0 SHEET 2 AA1 8 ALA A 26 THR A 29 -1 O GLU A 27 N GLN A 18 SHEET 3 AA1 8 VAL A 54 PHE A 57 1 O TYR A 56 N ILE A 28 SHEET 4 AA1 8 VAL A 260 ASP A 264 -1 O VAL A 262 N ILE A 55 SHEET 5 AA1 8 ALA A 123 ASP A 130 -1 N MET A 126 O LEU A 261 SHEET 6 AA1 8 ARG A 281 VAL A 288 -1 O THR A 284 N ARG A 127 SHEET 7 AA1 8 TYR A 89 ARG A 97 -1 N GLN A 93 O ARG A 285 SHEET 8 AA1 8 SER A 85 ILE A 86 -1 N ILE A 86 O VAL A 92 SHEET 1 AA2 3 THR A 250 VAL A 253 0 SHEET 2 AA2 3 THR A 138 SER A 142 -1 N THR A 138 O VAL A 253 SHEET 3 AA2 3 THR A 268 ALA A 272 -1 O ARG A 271 N GLY A 139 SHEET 1 AA3 3 THR A 199 PRO A 202 0 SHEET 2 AA3 3 ASN A 162 HIS A 165 -1 N HIS A 165 O THR A 199 SHEET 3 AA3 3 CYS A 222 ILE A 225 -1 O GLN A 223 N VAL A 164 SHEET 1 AA4 2 VAL A 204 THR A 206 0 SHEET 2 AA4 2 LYS A 213 LEU A 215 -1 O GLY A 214 N VAL A 205 SHEET 1 AA5 8 ALA B 16 PRO B 19 0 SHEET 2 AA5 8 ALA B 26 THR B 29 -1 O GLU B 27 N GLN B 18 SHEET 3 AA5 8 VAL B 54 PHE B 57 1 O TYR B 56 N ILE B 28 SHEET 4 AA5 8 VAL B 260 ASP B 264 -1 O VAL B 260 N PHE B 57 SHEET 5 AA5 8 ALA B 123 ASP B 130 -1 N MET B 126 O LEU B 261 SHEET 6 AA5 8 ARG B 281 VAL B 288 -1 O TYR B 282 N ASP B 130 SHEET 7 AA5 8 TYR B 89 ARG B 97 -1 N GLN B 93 O ARG B 285 SHEET 8 AA5 8 SER B 85 ILE B 86 -1 N ILE B 86 O VAL B 92 SHEET 1 AA6 3 THR B 250 VAL B 253 0 SHEET 2 AA6 3 THR B 138 SER B 142 -1 N THR B 138 O VAL B 253 SHEET 3 AA6 3 THR B 268 ALA B 272 -1 O ARG B 271 N GLY B 139 SHEET 1 AA7 3 THR B 199 PRO B 202 0 SHEET 2 AA7 3 ASN B 162 HIS B 165 -1 N HIS B 165 O THR B 199 SHEET 3 AA7 3 CYS B 222 ILE B 225 -1 O GLN B 223 N VAL B 164 SHEET 1 AA8 2 VAL B 204 THR B 206 0 SHEET 2 AA8 2 LYS B 213 LEU B 215 -1 O GLY B 214 N VAL B 205 LINK NE2 HIS A 111 V1 VVO A 302 1555 1555 2.14 LINK OD1 ASP A 113 V1 VVO A 302 1555 1555 2.15 LINK NE2 HIS A 270 V1 VVO A 302 1555 1555 2.18 LINK O3 SIN A 301 V1 VVO A 302 1555 1555 2.31 LINK O4 SIN A 301 V1 VVO A 302 1555 1555 2.24 LINK NE2 HIS B 111 V1 VVO B 301 1555 1555 2.21 LINK OD1 ASP B 113 V1 VVO B 301 1555 1555 2.31 LINK NE2 HIS B 270 V1 VVO B 301 1555 1555 2.11 CISPEP 1 ASP B 78 PRO B 79 0 4.68 SITE 1 AC1 11 ILE A 95 GLY A 107 HIS A 111 THR A 138 SITE 2 AC1 11 TRP A 263 HIS A 270 ARG A 281 ARG A 285 SITE 3 AC1 11 VVO A 302 HOH A 471 HOH A 585 SITE 1 AC2 4 HIS A 111 ASP A 113 HIS A 270 SIN A 301 SITE 1 AC3 8 ARG A 34 GLN A 66 ARG A 224 GLY A 227 SITE 2 AC3 8 MET A 228 HOH A 440 HOH A 447 HOH A 493 SITE 1 AC4 9 TRP A 110 ARG A 271 HOH A 442 HOH A 483 SITE 2 AC4 9 HOH A 529 HOH A 534 ARG B 246 PHE B 247 SITE 3 AC4 9 HOH B 409 SITE 1 AC5 3 HIS B 111 ASP B 113 HIS B 270 CRYST1 85.915 97.868 69.855 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014315 0.00000