HEADER IMMUNE SYSTEM 22-MAY-15 5BMF TITLE CRYSTAL STRUCTURE OF A THEOPHYLLINE BINDING ANTIBODY FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB FRAGMENT LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS ANTIBODY, HAPTEN BINDING, THEOPHYLLINE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.BUJOTZEK,A.FUCHS,Q.CHANGTAO,S.KLOSTERMANN,J.BENZ,I.ANTES,S.DENGL, AUTHOR 2 E.HOFFMANN,G.GEORGES REVDAT 3 01-MAY-24 5BMF 1 REMARK REVDAT 2 02-SEP-15 5BMF 1 JRNL REVDAT 1 29-JUL-15 5BMF 0 JRNL AUTH A.BUJOTZEK,A.FUCHS,C.QU,J.BENZ,S.KLOSTERMANN,I.ANTES, JRNL AUTH 2 G.GEORGES JRNL TITL MOFVAB: MODELING THE FV REGION OF ANTIBODIES. JRNL REF MABS V. 7 838 2015 JRNL REFN ESSN 1942-0870 JRNL PMID 26176812 JRNL DOI 10.1080/19420862.2015.1068492 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1931 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.4569 - 5.5994 1.00 2785 145 0.1666 0.1682 REMARK 3 2 5.5994 - 4.4446 1.00 2692 126 0.1296 0.1769 REMARK 3 3 4.4446 - 3.8828 1.00 2663 130 0.1513 0.1669 REMARK 3 4 3.8828 - 3.5278 1.00 2654 146 0.1769 0.2211 REMARK 3 5 3.5278 - 3.2750 1.00 2641 134 0.2249 0.2488 REMARK 3 6 3.2750 - 3.0819 1.00 2602 175 0.2626 0.3146 REMARK 3 7 3.0819 - 2.9275 1.00 2591 167 0.2991 0.3407 REMARK 3 8 2.9275 - 2.8001 1.00 2635 127 0.3155 0.4024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3440 REMARK 3 ANGLE : 1.264 4690 REMARK 3 CHIRALITY : 0.066 522 REMARK 3 PLANARITY : 0.006 593 REMARK 3 DIHEDRAL : 15.003 1240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1909 -7.5818 -7.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.5307 T22: 0.5610 REMARK 3 T33: 0.5914 T12: 0.0098 REMARK 3 T13: 0.0627 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 0.3938 L22: 3.4261 REMARK 3 L33: 3.8929 L12: -0.8619 REMARK 3 L13: -0.0582 L23: 0.1701 REMARK 3 S TENSOR REMARK 3 S11: -0.3104 S12: -0.1086 S13: 0.0279 REMARK 3 S21: 0.2459 S22: 0.0503 S23: 0.5767 REMARK 3 S31: -0.4369 S32: -0.4091 S33: 0.1171 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6930 -10.7253 -5.2275 REMARK 3 T TENSOR REMARK 3 T11: 0.4818 T22: 0.3585 REMARK 3 T33: 0.4344 T12: 0.0377 REMARK 3 T13: -0.0278 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 3.5104 L22: 3.7148 REMARK 3 L33: 3.0477 L12: 1.6499 REMARK 3 L13: 1.4027 L23: -2.2496 REMARK 3 S TENSOR REMARK 3 S11: 0.1480 S12: -0.4602 S13: -0.2164 REMARK 3 S21: -0.2162 S22: -0.1267 S23: -0.4286 REMARK 3 S31: -0.0762 S32: 0.3783 S33: 0.0889 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 54 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2356 -6.2836 -6.3644 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.4299 REMARK 3 T33: 0.4324 T12: 0.0559 REMARK 3 T13: -0.0207 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.2391 L22: 4.2460 REMARK 3 L33: 3.4913 L12: 0.5069 REMARK 3 L13: 0.7160 L23: 0.7369 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: -0.0443 S13: 0.1357 REMARK 3 S21: 0.4053 S22: 0.1028 S23: -0.3296 REMARK 3 S31: -0.1909 S32: -0.1439 S33: -0.1347 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 110 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3799 -34.8174 -19.1771 REMARK 3 T TENSOR REMARK 3 T11: 0.5904 T22: 0.4673 REMARK 3 T33: 0.6443 T12: -0.1613 REMARK 3 T13: -0.0783 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.2058 L22: 2.2663 REMARK 3 L33: 2.1203 L12: -0.4663 REMARK 3 L13: -0.2985 L23: 0.4920 REMARK 3 S TENSOR REMARK 3 S11: -0.3835 S12: 0.4047 S13: -0.0649 REMARK 3 S21: -0.6312 S22: 1.0081 S23: 0.7198 REMARK 3 S31: 0.6012 S32: -1.1813 S33: -0.0563 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 138 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6794 -34.5686 -14.8364 REMARK 3 T TENSOR REMARK 3 T11: 0.4618 T22: 0.8077 REMARK 3 T33: 0.6512 T12: -0.0283 REMARK 3 T13: 0.0008 T23: 0.1239 REMARK 3 L TENSOR REMARK 3 L11: 1.7905 L22: 4.7802 REMARK 3 L33: 3.5608 L12: 0.2874 REMARK 3 L13: -1.1907 L23: -1.4712 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.1127 S13: -0.0399 REMARK 3 S21: 0.0666 S22: 0.5132 S23: 0.9636 REMARK 3 S31: -0.0988 S32: -1.0113 S33: -0.2515 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.2431 -19.9721 8.7074 REMARK 3 T TENSOR REMARK 3 T11: 0.7889 T22: 0.6413 REMARK 3 T33: 0.7400 T12: 0.0103 REMARK 3 T13: -0.2227 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.1775 L22: 0.6168 REMARK 3 L33: 2.1886 L12: 0.0096 REMARK 3 L13: 0.4136 L23: -0.9991 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.1291 S13: 0.0124 REMARK 3 S21: 0.9571 S22: -0.2665 S23: -1.1912 REMARK 3 S31: -0.3244 S32: 0.3469 S33: 0.1769 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 38 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5202 -22.4127 9.7506 REMARK 3 T TENSOR REMARK 3 T11: 0.8048 T22: 0.5022 REMARK 3 T33: 0.5117 T12: 0.0557 REMARK 3 T13: -0.1412 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.0224 L22: 5.8610 REMARK 3 L33: 2.8025 L12: -0.4814 REMARK 3 L13: -1.2985 L23: -1.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.3976 S13: -0.1259 REMARK 3 S21: 1.0970 S22: -0.0462 S23: -0.1597 REMARK 3 S31: -0.2739 S32: -0.1065 S33: 0.0476 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 96 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2409 -39.5985 -10.0315 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.5480 REMARK 3 T33: 0.4498 T12: -0.0057 REMARK 3 T13: 0.0741 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.8437 L22: 4.6615 REMARK 3 L33: 1.5159 L12: 0.7361 REMARK 3 L13: 0.0927 L23: -1.1910 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.1223 S13: -0.0809 REMARK 3 S21: -0.4237 S22: 0.1357 S23: -0.1431 REMARK 3 S31: 0.4396 S32: -0.2179 S33: -0.0076 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 156 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.1797 -48.8464 -17.0705 REMARK 3 T TENSOR REMARK 3 T11: 0.8063 T22: 0.5469 REMARK 3 T33: 0.5682 T12: -0.1092 REMARK 3 T13: 0.0569 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.1542 L22: 4.6134 REMARK 3 L33: 4.2023 L12: -0.4431 REMARK 3 L13: -0.3332 L23: -1.0745 REMARK 3 S TENSOR REMARK 3 S11: -0.1644 S12: 0.3668 S13: -0.2291 REMARK 3 S21: -1.1648 S22: 0.2040 S23: 0.1087 REMARK 3 S31: 0.9529 S32: -0.0306 S33: -0.0119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 112.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18500 REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.30000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN HOUSE FAB FRAGMENT COORDINATES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NA-FORMATE, 0.1 M TRIS, PH 8.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.89733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.79467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.79467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.89733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 1100 REMARK 465 SER H 1101 REMARK 465 CYS H 1102 REMARK 465 ASP H 1103 REMARK 465 LYS H 1104 REMARK 465 THR H 1105 REMARK 465 HIS H 1106 REMARK 465 THR H 1107 REMARK 465 GLY L 2104 REMARK 465 GLU L 2105 REMARK 465 CYS L 2106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP L 728 OH TYR L 732 2.09 REMARK 500 OG1 THR H 408 O HOH H 1301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 115 -9.70 75.17 REMARK 500 TYR H 196 172.10 86.06 REMARK 500 THR H 321 -159.22 -129.84 REMARK 500 ASP H 353 -10.23 129.75 REMARK 500 ASP H1030 71.60 63.02 REMARK 500 THR H1046 -37.89 -137.48 REMARK 500 ASN L 582 15.88 -144.94 REMARK 500 ASN L 583 -6.06 77.61 REMARK 500 VAL L 694 -50.53 60.47 REMARK 500 SER L 711 140.93 -174.48 REMARK 500 ASN L2030 75.59 54.54 REMARK 500 ASP L2043 54.44 34.24 REMARK 500 LYS L2082 -52.94 -121.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 4TJ H 1201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4TJ H 1201 DBREF 5BMF H 101 1107 PDB 5BMF 5BMF 101 1107 DBREF 5BMF L 501 2106 PDB 5BMF 5BMF 501 2106 SEQRES 1 H 224 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 224 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 224 TYR SER ILE THR SER ASP TYR ALA TRP ASN TRP ILE ARG SEQRES 4 H 224 GLN HIS PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SEQRES 5 H 224 ARG TYR SER GLY HIS THR GLY TYR ASN PRO SER LEU LYS SEQRES 6 H 224 SER ARG VAL THR ILE SER ARG ASP THR SER LYS ASN GLN SEQRES 7 H 224 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 224 ALA VAL TYR TYR CYS ALA ARG TRP VAL ASP TYR PHE ASP SEQRES 9 H 224 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 H 224 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 224 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 224 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 224 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 224 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 224 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 224 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 224 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 H 224 THR HIS THR SEQRES 1 L 219 ASP VAL VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER ILE VAL TYR ASN ASN ARG TYR THR TYR LEU GLU SEQRES 4 L 219 TRP PHE GLN GLN ARG PRO GLY GLN SER PRO ARG LEU LEU SEQRES 5 L 219 ILE TYR GLY VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS TYR GLN GLY THR HIS ALA PRO TYR THR PHE GLY SEQRES 9 L 219 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET 4TJ H1201 27 HETNAM 4TJ 2-(5-{1-[1-(1,3-DIMETHYL-2,6-DIOXO-2,3,6,7-TETRAHYDRO- HETNAM 2 4TJ 1H-PURIN-8-YL)-4,15-DIOXO-8,11-DIOXA-5,14-DIAZAICOSAN- HETNAM 3 4TJ 20-YL]-3,3-DIMETHYL-6-SULFO-1,3-DIHYDRO-2H-INDOL-2- HETNAM 4 4TJ YLIDENE}PENTA-1,3-DIEN-1-YL)-1-ETHYL-3,3-DIMETHYL-3H- HETNAM 5 4TJ INDOLIUM-5-SULFONATE FORMUL 3 4TJ C50 H66 N8 O12 S2 FORMUL 4 HOH *76(H2 O) HELIX 1 AA1 LEU H 297 SER H 299 5 3 HELIX 2 AA2 THR H 321 THR H 325 5 5 HELIX 3 AA3 SER H 1013 GLY H 1019 1 7 HELIX 4 AA4 SER H 1042 ALA H 1044 5 3 HELIX 5 AA5 SER H 1073 LEU H 1075 5 3 HELIX 6 AA6 LYS H 1087 ASN H 1090 5 4 HELIX 7 AA7 GLU L 725 VAL L 729 5 5 HELIX 8 AA8 SER L 2013 SER L 2019 1 7 HELIX 9 AA9 LYS L 2075 LYS L 2080 1 6 SHEET 1 AA1 4 GLN H 103 SER H 107 0 SHEET 2 AA1 4 LEU H 118 SER H 125 -1 O SER H 125 N GLN H 103 SHEET 3 AA1 4 GLN H 312 LEU H 317 -1 O LEU H 317 N LEU H 118 SHEET 4 AA1 4 VAL H 302 ASP H 307 -1 N ASP H 307 O GLN H 312 SHEET 1 AA2 6 LEU H 111 VAL H 112 0 SHEET 2 AA2 6 THR H 405 VAL H 409 1 O THR H 408 N VAL H 112 SHEET 3 AA2 6 ALA H 326 TRP H 351 -1 N TYR H 328 O THR H 405 SHEET 4 AA2 6 ALA H 197 GLN H 204 -1 N ILE H 202 O TYR H 329 SHEET 5 AA2 6 LEU H 210 ILE H 252 -1 O ILE H 252 N TRP H 198 SHEET 6 AA2 6 THR H 291 TYR H 293 -1 O GLY H 292 N TYR H 251 SHEET 1 AA3 4 LEU H 111 VAL H 112 0 SHEET 2 AA3 4 THR H 405 VAL H 409 1 O THR H 408 N VAL H 112 SHEET 3 AA3 4 ALA H 326 TRP H 351 -1 N TYR H 328 O THR H 405 SHEET 4 AA3 4 PHE H 397 TRP H 401 -1 O TYR H 399 N ARG H 332 SHEET 1 AA4 4 SER H1006 LEU H1010 0 SHEET 2 AA4 4 THR H1021 TYR H1031 -1 O GLY H1025 N LEU H1010 SHEET 3 AA4 4 TYR H1062 PRO H1071 -1 O LEU H1064 N VAL H1028 SHEET 4 AA4 4 VAL H1049 THR H1051 -1 N HIS H1050 O VAL H1067 SHEET 1 AA5 4 SER H1006 LEU H1010 0 SHEET 2 AA5 4 THR H1021 TYR H1031 -1 O GLY H1025 N LEU H1010 SHEET 3 AA5 4 TYR H1062 PRO H1071 -1 O LEU H1064 N VAL H1028 SHEET 4 AA5 4 VAL H1055 LEU H1056 -1 N VAL H1055 O SER H1063 SHEET 1 AA6 3 THR H1037 TRP H1040 0 SHEET 2 AA6 3 TYR H1080 HIS H1086 -1 O ASN H1083 N SER H1039 SHEET 3 AA6 3 THR H1091 VAL H1097 -1 O THR H1091 N HIS H1086 SHEET 1 AA7 4 MET L 504 SER L 507 0 SHEET 2 AA7 4 ALA L 519 SER L 552 -1 O ARG L 551 N THR L 505 SHEET 3 AA7 4 ASP L 716 ILE L 721 -1 O PHE L 717 N CYS L 523 SHEET 4 AA7 4 PHE L 706 SER L 711 -1 N SER L 707 O LYS L 720 SHEET 1 AA8 6 SER L 510 THR L 514 0 SHEET 2 AA8 6 THR L 805 LYS L 810 1 O LYS L 806 N LEU L 511 SHEET 3 AA8 6 GLY L 730 GLN L 752 -1 N GLY L 730 O LEU L 807 SHEET 4 AA8 6 LEU L 598 GLN L 604 -1 N GLN L 604 O VAL L 731 SHEET 5 AA8 6 ARG L 611 TYR L 615 -1 O LEU L 613 N TRP L 601 SHEET 6 AA8 6 ASN L 696 ARG L 697 -1 O ASN L 696 N TYR L 615 SHEET 1 AA9 4 SER L 510 THR L 514 0 SHEET 2 AA9 4 THR L 805 LYS L 810 1 O LYS L 806 N LEU L 511 SHEET 3 AA9 4 GLY L 730 GLN L 752 -1 N GLY L 730 O LEU L 807 SHEET 4 AA9 4 THR L 799 PHE L 801 -1 O THR L 799 N GLN L 752 SHEET 1 AB1 4 SER L2006 PHE L2010 0 SHEET 2 AB1 4 THR L2021 PHE L2031 -1 O LEU L2027 N PHE L2008 SHEET 3 AB1 4 TYR L2065 SER L2074 -1 O LEU L2073 N ALA L2022 SHEET 4 AB1 4 SER L2051 VAL L2055 -1 N SER L2054 O SER L2068 SHEET 1 AB2 4 ALA L2045 LEU L2046 0 SHEET 2 AB2 4 LYS L2037 VAL L2042 -1 N VAL L2042 O ALA L2045 SHEET 3 AB2 4 TYR L2084 THR L2089 -1 O GLU L2087 N GLN L2039 SHEET 4 AB2 4 VAL L2097 PHE L2101 -1 O PHE L2101 N TYR L2084 SSBOND 1 CYS H 122 CYS H 330 1555 1555 2.00 SSBOND 2 CYS H 1026 CYS H 1082 1555 1555 2.01 SSBOND 3 CYS L 523 CYS L 734 1555 1555 2.04 SSBOND 4 CYS L 2026 CYS L 2086 1555 1555 2.01 CISPEP 1 PHE H 1032 PRO H 1033 0 -4.21 CISPEP 2 GLU H 1034 PRO H 1035 0 7.52 CISPEP 3 SER L 507 PRO L 508 0 -0.16 CISPEP 4 ALA L 796 PRO L 797 0 2.53 CISPEP 5 TYR L 2032 PRO L 2033 0 2.92 SITE 1 AC1 15 ALA H 197 ASN H 199 TYR H 251 ARG H 253 SITE 2 AC1 15 TRP H 351 ASP H 353 PHE H 397 THR H1017 SITE 3 AC1 15 SER H1072 HOH H1315 TYR L 581 TYR L 597 SITE 4 AC1 15 TYR L 751 GLY L 753 TYR L 798 CRYST1 129.438 129.438 92.692 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007726 0.004460 0.000000 0.00000 SCALE2 0.000000 0.008921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010788 0.00000