HEADER HYDROLASE 25-MAY-15 5BN4 TITLE STRUCTURE OF A UNIQUE ATP SYNTHASE NEQA-NEQB IN COMPLEX WITH ANP FROM TITLE 2 NANOARCHEAUM EQUITANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE ATP SYNTHASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: V-ATPASE SUBUNIT A; COMPND 5 EC: 3.6.3.14; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEQ263; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NEQB; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NANOARCHAEUM EQUITANS KIN4-M; SOURCE 3 ORGANISM_TAXID: 228908; SOURCE 4 STRAIN: KIN4-M; SOURCE 5 GENE: ATPA, NEQ103; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: NANOARCHAEUM EQUITANS KIN4-M; SOURCE 11 ORGANISM_TAXID: 228908; SOURCE 12 STRAIN: KIN4-M; SOURCE 13 GENE: NEQ263; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS ATP SYNTHASE, NANOARCHEAUM EQUITANS, CATALYTIC CORE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOHANTY,C.JOBICHEN,V.P.R.CHICHILI,J.SIVARAMAN REVDAT 4 08-NOV-23 5BN4 1 JRNL REMARK REVDAT 3 18-NOV-15 5BN4 1 JRNL REVDAT 2 14-OCT-15 5BN4 1 JRNL REVDAT 1 16-SEP-15 5BN4 0 JRNL AUTH S.MOHANTY,C.JOBICHEN,V.P.R.CHICHILI,A.VELAZQUEZ-CAMPOY, JRNL AUTH 2 B.C.LOW,C.W.V.HOGUE,J.SIVARAMAN JRNL TITL STRUCTURAL BASIS FOR A UNIQUE ATP SYNTHASE CORE COMPLEX FROM JRNL TITL 2 NANOARCHEAUM EQUITANS JRNL REF J.BIOL.CHEM. V. 290 27280 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26370083 JRNL DOI 10.1074/JBC.M115.677492 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 39977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8619 - 6.4788 0.94 2799 147 0.1645 0.1814 REMARK 3 2 6.4788 - 5.1543 0.93 2764 141 0.2150 0.2533 REMARK 3 3 5.1543 - 4.5063 0.91 2704 151 0.1708 0.2207 REMARK 3 4 4.5063 - 4.0958 0.91 2735 148 0.1666 0.1883 REMARK 3 5 4.0958 - 3.8031 0.90 2677 140 0.1974 0.2514 REMARK 3 6 3.8031 - 3.5794 0.94 2790 159 0.2118 0.2586 REMARK 3 7 3.5794 - 3.4005 0.94 2829 133 0.2217 0.2702 REMARK 3 8 3.4005 - 3.2528 0.92 2751 152 0.2444 0.3259 REMARK 3 9 3.2528 - 3.1277 0.90 2678 138 0.2645 0.3419 REMARK 3 10 3.1277 - 3.0200 0.90 2643 140 0.2758 0.3297 REMARK 3 11 3.0200 - 2.9257 0.89 2674 141 0.3010 0.3911 REMARK 3 12 2.9257 - 2.8421 0.87 2581 152 0.3030 0.4383 REMARK 3 13 2.8421 - 2.7674 0.89 2628 140 0.3112 0.3755 REMARK 3 14 2.7674 - 2.6999 0.89 2694 131 0.3263 0.3841 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 41.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.14930 REMARK 3 B22 (A**2) : -13.14930 REMARK 3 B33 (A**2) : 26.29870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7867 REMARK 3 ANGLE : 0.632 10648 REMARK 3 CHIRALITY : 0.045 1182 REMARK 3 PLANARITY : 0.003 1361 REMARK 3 DIHEDRAL : 11.232 2972 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3GQB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 1.6M AMMONIUM SULPHATE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 96.74200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 55.85402 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.28333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 96.74200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 55.85402 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.28333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 96.74200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 55.85402 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.28333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 111.70804 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 72.56667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 111.70804 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 72.56667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 111.70804 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS HETERO-HEXAMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 98140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 568 REMARK 465 SER A 569 REMARK 465 GLN A 570 REMARK 465 MET B 1 REMARK 465 ILE B 415 REMARK 465 GLN B 416 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ARG A 25 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 39 CB CG CD OE1 OE2 REMARK 470 ASN A 40 CB CG OD1 ND2 REMARK 470 THR A 51 CB OG1 CG2 REMARK 470 LYS A 65 CB CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 VAL A 113 CB CG1 CG2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 VAL A 465 CB CG1 CG2 REMARK 470 GLN A 534 CG CD OE1 NE2 REMARK 470 LEU A 549 CB CG CD1 CD2 REMARK 470 GLU A 551 CB CG CD OE1 OE2 REMARK 470 PHE A 552 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 566 CB CG CD1 CD2 REMARK 470 PRO B 2 CG CD REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 TYR B 35 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 35 OH REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ASN B 37 CB CG OD1 ND2 REMARK 470 LYS B 38 CB CG CD CE NZ REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 ILE B 51 CG1 CG2 CD1 REMARK 470 LYS B 52 CB CG CD CE NZ REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 PRO B 84 CB CG CD REMARK 470 GLU B 89 CB CG CD OE1 OE2 REMARK 470 ILE B 359 CB CG1 CG2 CD1 REMARK 470 VAL B 360 CB CG1 CG2 REMARK 470 ASP B 363 CB CG OD1 OD2 REMARK 470 PRO B 414 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 884 O HOH B 524 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 -119.40 83.19 REMARK 500 ILE A 144 93.10 -69.81 REMARK 500 ASN A 197 -32.21 -141.49 REMARK 500 ASP A 241 93.73 -69.22 REMARK 500 GLU A 252 -161.81 -121.20 REMARK 500 SER A 341 -141.06 -107.89 REMARK 500 SER A 380 78.13 -116.44 REMARK 500 TRP A 402 77.44 -102.72 REMARK 500 ALA A 416 40.44 -78.80 REMARK 500 VAL A 465 -42.80 -164.07 REMARK 500 ILE A 537 -61.31 57.92 REMARK 500 SER A 565 -75.52 57.62 REMARK 500 LEU A 566 97.46 -57.41 REMARK 500 PRO B 7 34.50 -95.17 REMARK 500 GLU B 14 -74.17 -59.40 REMARK 500 LEU B 24 -147.10 -107.42 REMARK 500 TYR B 35 -119.52 -80.82 REMARK 500 GLU B 36 -76.84 -92.67 REMARK 500 ASP B 45 -163.71 -162.35 REMARK 500 LYS B 52 -97.53 -79.23 REMARK 500 PRO B 84 69.00 -151.54 REMARK 500 LYS B 85 116.90 68.35 REMARK 500 TYR B 87 108.87 -57.70 REMARK 500 ASP B 90 88.61 60.01 REMARK 500 ILE B 118 -60.57 -105.92 REMARK 500 PRO B 139 61.04 -65.87 REMARK 500 ASN B 184 46.54 -106.76 REMARK 500 ASN B 218 74.99 -100.55 REMARK 500 SER B 247 -147.40 -87.59 REMARK 500 THR B 269 -168.48 -128.55 REMARK 500 GLU B 300 51.43 -91.41 REMARK 500 PRO B 317 45.33 -75.63 REMARK 500 ILE B 359 -93.86 -80.22 REMARK 500 ASP B 363 -4.17 91.39 REMARK 500 GLU B 382 -38.73 -132.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 252 OE1 REMARK 620 2 GLU A 256 OE1 128.4 REMARK 620 3 ANP A 601 O2G 100.8 115.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BN3 RELATED DB: PDB REMARK 900 RELATED ID: 5BN5 RELATED DB: PDB REMARK 900 RELATED ID: 5BO5 RELATED DB: PDB DBREF 5BN4 A 1 570 UNP Q74MJ7 VATA_NANEQ 1 570 DBREF 5BN4 B 1 416 UNP Q74MS5 Q74MS5_NANEQ 1 416 SEQRES 1 A 570 MET ASN ARG ILE ILE SER ILE ASN GLY PRO LEU VAL ILE SEQRES 2 A 570 ALA LYS GLY LYS PHE SER ILE PHE GLU VAL VAL ARG VAL SEQRES 3 A 570 GLY GLU GLU LYS LEU ILE GLY GLU VAL ILE GLY ILE GLU SEQRES 4 A 570 ASN ASP LYS ALA TYR ILE GLN VAL TYR GLU ASP THR ASN SEQRES 5 A 570 GLY LEU LYS VAL GLY GLU PRO VAL PHE ASN THR GLY LYS SEQRES 6 A 570 PRO LEU THR ILE GLU LEU GLY PRO GLY LEU LEU ALA ASN SEQRES 7 A 570 ILE PHE ASP GLY LEU GLY ARG PRO LEU LYS ASP ILE TYR SEQRES 8 A 570 GLU LYS THR GLN SER ILE TYR ILE PRO LYS GLY ILE ASP SEQRES 9 A 570 LEU PRO THR LEU ASP ARG LYS LYS VAL TRP GLU PHE ILE SEQRES 10 A 570 PRO LYS LYS LYS LYS GLY ASP THR ILE LYS GLY GLY ASP SEQRES 11 A 570 ILE ILE GLY THR VAL ASN GLU ASN GLY PHE GLU HIS ARG SEQRES 12 A 570 ILE ILE VAL PRO PRO ASN VAL GLU GLY LYS ILE GLU GLU SEQRES 13 A 570 ILE TYR GLU GLY ASN PHE THR ILE GLU GLU THR ILE ALA SEQRES 14 A 570 ILE VAL ASN GLY LYS PRO ILE LYS LEU TYR HIS GLU TRP SEQRES 15 A 570 PRO ILE ARG LYS PRO ARG PRO TYR LYS GLU LYS LEU ASP SEQRES 16 A 570 TYR ASN TYR PRO PHE ILE THR GLY THR ARG VAL LEU ASP SEQRES 17 A 570 ILE MET PHE PRO ILE ALA LYS GLY GLY SER ALA ALA VAL SEQRES 18 A 570 PRO GLY PRO PHE GLY SER GLY LYS THR VAL LEU ASN GLN SEQRES 19 A 570 GLN ILE ALA LYS TRP ALA ASP SER ASP ILE VAL ILE TYR SEQRES 20 A 570 ILE GLY CYS GLY GLU ARG GLY ASN GLU MET THR GLU VAL SEQRES 21 A 570 LEU GLU GLU PHE PRO LYS LEU LYS ASP PRO LYS THR GLY SEQRES 22 A 570 LYS PRO LEU MET TYR ARG THR ILE LEU ILE ALA ASN THR SEQRES 23 A 570 SER ASN MET PRO ILE ALA ALA ARG GLU ALA SER ILE TYR SEQRES 24 A 570 LEU GLY ALA THR ILE GLY GLU TYR PHE ARG ASP GLN GLY SEQRES 25 A 570 TYR SER VAL VAL VAL ASN ALA ASP SER THR SER ARG TRP SEQRES 26 A 570 ALA GLU ALA LEU ARG GLU ILE SER SER ARG LEU GLY GLU SEQRES 27 A 570 ILE PRO SER GLU GLU GLY TYR PRO ALA TYR LEU LEU ARG SEQRES 28 A 570 LYS LEU ALA GLU PHE TYR GLU ARG SER GLY ARG VAL ARG SEQRES 29 A 570 THR LEU ASN ASP LEU GLU GLY SER LEU THR ILE ILE GLY SEQRES 30 A 570 ALA VAL SER PRO PRO GLY GLY ASP PHE SER GLU PRO VAL SEQRES 31 A 570 THR GLN ASN THR LEU ARG LEU VAL GLY ALA LEU TRP ALA SEQRES 32 A 570 LEU ASP SER LYS LEU ALA TYR LYS ARG HIS TYR PRO ALA SEQRES 33 A 570 ILE ASN TYR LEU ILE SER TYR THR LYS GLN TRP GLU PHE SEQRES 34 A 570 VAL LYS LYS TYR PHE GLU GLU LEU TYR GLU ASP VAL ILE SEQRES 35 A 570 GLU ILE ARG GLU GLU PHE PHE ALA ILE LEU LYS ARG GLU SEQRES 36 A 570 SER GLU LEU MET ASP ILE VAL SER ILE VAL GLY PRO ASP SEQRES 37 A 570 ALA LEU SER ASP ASN GLU LYS ILE TYR LEU HIS MET GLY SEQRES 38 A 570 ARG ILE ILE ARG GLU GLY PHE LEU GLN GLN ASP ALA PHE SEQRES 39 A 570 ASP GLU ASN ASP SER TYR SER PRO LEU GLU LYS THR ILE SEQRES 40 A 570 GLU LEU MET ARG ILE ILE HIS LYS TYR TYR VAL THR VAL SEQRES 41 A 570 LYS GLN LEU LEU GLY LYS ILE PRO LEU GLU GLU ILE GLU SEQRES 42 A 570 GLN LYS GLY ILE HIS GLU LYS ILE ILE LYS LEU ARG TYR SEQRES 43 A 570 LYS SER LEU LYS GLU PHE ARG GLU GLU ILE LYS ALA ILE SEQRES 44 A 570 GLU GLN GLU ILE LEU SER LEU LEU ASN SER GLN SEQRES 1 B 416 MET PRO SER ILE LYS PRO PRO LEU ILE ALA VAL GLU LEU SEQRES 2 B 416 GLU ASN PRO MET LEU GLY GLU VAL ILE ASP LEU GLU GLU SEQRES 3 B 416 THR LYS ALA ILE VAL ILE ALA ALA TYR GLU ASN LYS ALA SEQRES 4 B 416 LEU ALA LEU LEU PHE ASP TYR TYR THR GLY GLU ILE LYS SEQRES 5 B 416 GLN ILE ASN ARG GLN GLY ASN THR TYR LYS ILE ALA VAL SEQRES 6 B 416 SER GLU ASP TYR ILE GLY GLY ILE PHE ASN GLY PHE GLY SEQRES 7 B 416 GLU PRO ILE LYS GLY PRO LYS PRO TYR PRO GLU ASP TYR SEQRES 8 B 416 ARG ASP ILE ASN GLY LEU ALA ILE ASN PRO TYR ALA ARG SEQRES 9 B 416 LYS VAL PRO ASN GLU ILE LEU TYR THR GLY ILE SER SER SEQRES 10 B 416 ILE ASP VAL ALA HIS PRO LEU LEU LYS GLY GLN LYS ILE SEQRES 11 B 416 ALA ILE PHE SER PRO PRO GLY LEU PRO MET GLU ARG LEU SEQRES 12 B 416 ALA LEU GLN ILE ALA ARG ASN VAL ALA LYS ASP LYS THR SEQRES 13 B 416 ILE ILE PHE ALA ALA ILE GLY VAL PRO SER ASP ILE TYR SEQRES 14 B 416 LYS MET PHE ILE ASP GLU PHE ILE ASN THR LYS ALA ILE SEQRES 15 B 416 MET ASN SER ALA ILE PHE ILE SER LYS ALA ASP SER SER SEQRES 16 B 416 PRO ILE GLU LYS ILE TYR THR PRO ARG VAL ALA LEU THR SEQRES 17 B 416 LEU ALA GLU TYR LEU ALA PHE GLU LYS ASN ARG ASP VAL SEQRES 18 B 416 LEU VAL LEU MET LEU ASP MET THR ASN TYR ALA ASP ALA SEQRES 19 B 416 LEU ARG GLU ILE SER THR LEU ARG LYS GLU ILE PRO SER SEQRES 20 B 416 ARG ARG GLY TYR PRO ALA TYR LEU TYR THR ASP LEU ALA SEQRES 21 B 416 SER ILE TYR GLU ARG SER GLY LEU THR SER LYS GLY SER SEQRES 22 B 416 ILE THR LEU ILE PRO MET LEU THR MET PRO GLY ASN ASP SEQRES 23 B 416 ILE THR HIS VAL VAL PRO ASP LEU THR GLY TYR ILE THR SEQRES 24 B 416 GLU GLY GLN TYR VAL LEU SER GLN ASP LEU HIS SER LYS SEQRES 25 B 416 ASN ILE TYR PRO PRO ILE ASP LEU LEU LYS SER LEU SER SEQRES 26 B 416 ARG LEU ALA LYS ASN GLY MET SER LYS LYS HIS LYS LYS SEQRES 27 B 416 TYR ALA ASP ILE LEU ILE LYS SER TYR ALA LYS GLY LEU SEQRES 28 B 416 GLU ALA ARG ASP ILE ALA THR ILE VAL GLY GLU ASP SER SEQRES 29 B 416 LEU SER LYS GLU ASP LYS ALA TYR LEU LYS PHE ALA GLU SEQRES 30 B 416 LEU VAL GLU LYS GLU PHE ILE LYS GLN ASP TYR TYR GLU SEQRES 31 B 416 TYR ARG SER ILE GLU LYS SER PHE GLU ILE ILE ASP SER SEQRES 32 B 416 ILE LEU SER GLN SER GLY LEU PRO TYR SER PRO ILE GLN HET ANP A 601 31 HET MG A 602 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *325(H2 O) HELIX 1 AA1 PRO A 86 GLN A 95 1 10 HELIX 2 AA2 THR A 204 ILE A 209 1 6 HELIX 3 AA3 GLY A 228 ALA A 240 1 13 HELIX 4 AA4 ARG A 253 PHE A 264 1 12 HELIX 5 AA5 PRO A 265 LEU A 267 5 3 HELIX 6 AA6 PRO A 275 TYR A 278 5 4 HELIX 7 AA7 ILE A 291 ASP A 310 1 20 HELIX 8 AA8 THR A 322 LEU A 336 1 15 HELIX 9 AA9 SER A 341 TYR A 345 5 5 HELIX 10 AB1 TYR A 348 GLU A 358 1 11 HELIX 11 AB2 PRO A 381 ASP A 385 5 5 HELIX 12 AB3 GLU A 388 LEU A 395 1 8 HELIX 13 AB4 ASP A 405 LYS A 411 1 7 HELIX 14 AB5 GLN A 426 TYR A 438 1 13 HELIX 15 AB6 ASP A 440 ILE A 464 1 25 HELIX 16 AB7 SER A 471 PHE A 488 1 18 HELIX 17 AB8 PRO A 502 GLN A 522 1 21 HELIX 18 AB9 PRO A 528 LYS A 535 1 8 HELIX 19 AC1 ILE A 537 LYS A 543 1 7 HELIX 20 AC2 LEU A 544 LYS A 547 5 4 HELIX 21 AC3 SER A 548 ILE A 563 1 16 HELIX 22 AC4 SER B 66 ILE B 70 5 5 HELIX 23 AC5 ILE B 115 VAL B 120 1 6 HELIX 24 AC6 PRO B 139 ALA B 152 1 14 HELIX 25 AC7 PRO B 165 THR B 179 1 15 HELIX 26 AC8 SER B 195 GLU B 216 1 22 HELIX 27 AC9 ASP B 227 ARG B 242 1 16 HELIX 28 AD1 SER B 247 TYR B 251 5 5 HELIX 29 AD2 TYR B 254 GLU B 264 1 11 HELIX 30 AD3 PRO B 283 ASP B 286 5 4 HELIX 31 AD4 HIS B 289 TYR B 297 1 9 HELIX 32 AD5 SER B 306 LYS B 312 1 7 HELIX 33 AD6 LEU B 327 MET B 332 1 6 HELIX 34 AD7 SER B 333 ALA B 357 1 25 HELIX 35 AD8 GLU B 368 PHE B 383 1 16 HELIX 36 AD9 SER B 393 SER B 408 1 16 SHEET 1 AA1 6 ARG A 3 ASN A 8 0 SHEET 2 AA1 6 LEU A 11 LYS A 15 -1 O ILE A 13 N ILE A 5 SHEET 3 AA1 6 LYS A 42 VAL A 47 -1 O ILE A 45 N VAL A 12 SHEET 4 AA1 6 LEU A 31 GLU A 39 -1 N GLY A 37 O TYR A 44 SHEET 5 AA1 6 VAL A 23 VAL A 26 -1 N VAL A 26 O LEU A 31 SHEET 6 AA1 6 VAL A 60 PHE A 61 -1 O PHE A 61 N ARG A 25 SHEET 1 AA2 2 THR A 68 LEU A 71 0 SHEET 2 AA2 2 HIS A 180 PRO A 183 -1 O HIS A 180 N LEU A 71 SHEET 1 AA3 7 ASN A 78 PHE A 80 0 SHEET 2 AA3 7 THR A 280 ASN A 285 1 O ALA A 284 N PHE A 80 SHEET 3 AA3 7 ILE A 244 CYS A 250 1 N GLY A 249 O ILE A 283 SHEET 4 AA3 7 SER A 314 ASP A 320 1 O ASN A 318 N ILE A 248 SHEET 5 AA3 7 GLU A 370 VAL A 379 1 O ILE A 376 N VAL A 317 SHEET 6 AA3 7 GLY A 361 ARG A 364 -1 N VAL A 363 O GLY A 371 SHEET 7 AA3 7 GLU A 192 LYS A 193 -1 N GLU A 192 O ARG A 364 SHEET 1 AA4 8 ASN A 78 PHE A 80 0 SHEET 2 AA4 8 THR A 280 ASN A 285 1 O ALA A 284 N PHE A 80 SHEET 3 AA4 8 ILE A 244 CYS A 250 1 N GLY A 249 O ILE A 283 SHEET 4 AA4 8 SER A 314 ASP A 320 1 O ASN A 318 N ILE A 248 SHEET 5 AA4 8 GLU A 370 VAL A 379 1 O ILE A 376 N VAL A 317 SHEET 6 AA4 8 SER A 218 PRO A 222 1 N VAL A 221 O GLY A 377 SHEET 7 AA4 8 ALA A 400 LEU A 401 1 O ALA A 400 N ALA A 220 SHEET 8 AA4 8 TYR A 423 THR A 424 -1 O TYR A 423 N LEU A 401 SHEET 1 AA5 4 PHE A 140 ILE A 145 0 SHEET 2 AA5 4 ILE A 131 GLU A 137 -1 N GLU A 137 O PHE A 140 SHEET 3 AA5 4 TRP A 114 PRO A 118 -1 N ILE A 117 O THR A 134 SHEET 4 AA5 4 GLY A 160 PHE A 162 -1 O GLY A 160 N PHE A 116 SHEET 1 AA6 4 THR A 125 ILE A 126 0 SHEET 2 AA6 4 GLY A 152 ILE A 157 -1 O GLY A 152 N ILE A 126 SHEET 3 AA6 4 ALA A 169 VAL A 171 -1 O ILE A 170 N GLU A 156 SHEET 4 AA6 4 LYS A 174 ILE A 176 -1 O ILE A 176 N ALA A 169 SHEET 1 AA7 6 SER B 3 LYS B 5 0 SHEET 2 AA7 6 LEU B 8 GLU B 12 -1 O LEU B 8 N LYS B 5 SHEET 3 AA7 6 LYS B 38 LEU B 43 -1 O ALA B 41 N ILE B 9 SHEET 4 AA7 6 LYS B 28 ALA B 34 -1 N ILE B 32 O LEU B 40 SHEET 5 AA7 6 GLU B 20 ASP B 23 -1 N GLU B 20 O VAL B 31 SHEET 6 AA7 6 ASN B 55 THR B 60 -1 O ASN B 55 N ASP B 23 SHEET 1 AA8 2 LYS B 62 ALA B 64 0 SHEET 2 AA8 2 TYR B 91 ASP B 93 -1 O ARG B 92 N ILE B 63 SHEET 1 AA9 6 ILE B 73 ASN B 75 0 SHEET 2 AA9 6 SER B 185 SER B 190 1 O ILE B 187 N PHE B 74 SHEET 3 AA9 6 THR B 156 ILE B 162 1 N ALA B 161 O PHE B 188 SHEET 4 AA9 6 ASP B 220 LEU B 226 1 O LEU B 226 N ILE B 162 SHEET 5 AA9 6 SER B 273 THR B 281 1 O THR B 275 N VAL B 221 SHEET 6 AA9 6 GLY B 267 LEU B 268 -1 N GLY B 267 O ILE B 274 SHEET 1 AB1 8 ILE B 73 ASN B 75 0 SHEET 2 AB1 8 SER B 185 SER B 190 1 O ILE B 187 N PHE B 74 SHEET 3 AB1 8 THR B 156 ILE B 162 1 N ALA B 161 O PHE B 188 SHEET 4 AB1 8 ASP B 220 LEU B 226 1 O LEU B 226 N ILE B 162 SHEET 5 AB1 8 SER B 273 THR B 281 1 O THR B 275 N VAL B 221 SHEET 6 AB1 8 ALA B 131 SER B 134 1 N ILE B 132 O PRO B 278 SHEET 7 AB1 8 GLY B 301 VAL B 304 1 O TYR B 303 N ALA B 131 SHEET 8 AB1 8 LEU B 324 SER B 325 -1 O LEU B 324 N GLN B 302 LINK OE1 GLU A 252 MG MG A 602 1555 1555 2.87 LINK OE1 GLU A 256 MG MG A 602 1555 1555 2.81 LINK O2G ANP A 601 MG MG A 602 1555 1555 2.86 CISPEP 1 ASP A 320 SER A 321 0 -3.33 CISPEP 2 TYR A 414 PRO A 415 0 -1.48 CISPEP 3 PRO B 6 PRO B 7 0 -1.26 CISPEP 4 GLY B 83 PRO B 84 0 -1.42 CISPEP 5 LEU B 226 ASP B 227 0 1.66 CISPEP 6 TYR B 315 PRO B 316 0 -4.71 SITE 1 AC1 22 PRO A 224 PHE A 225 GLY A 226 SER A 227 SITE 2 AC1 22 GLY A 228 LYS A 229 THR A 230 VAL A 231 SITE 3 AC1 22 ARG A 253 GLU A 256 ASP A 320 TYR A 414 SITE 4 AC1 22 GLN A 491 ASP A 492 ALA A 493 MG A 602 SITE 5 AC1 22 HOH A 701 HOH A 719 HOH A 819 HOH A 825 SITE 6 AC1 22 ARG B 326 HOH B 512 SITE 1 AC2 5 THR A 230 GLU A 252 ARG A 253 GLU A 256 SITE 2 AC2 5 ANP A 601 CRYST1 193.484 193.484 108.850 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005168 0.002984 0.000000 0.00000 SCALE2 0.000000 0.005968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009187 0.00000