HEADER TRANSCRIPTION 26-MAY-15 5BNU OBSLTE 16-NOV-16 5BNU 5KCT TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN TITLE 2 COMPLEX WITH AN N-ETHYL, 4-CHLOROBENZYL OBHS-N DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, UNP RESIDUES 303-548; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 687-696; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 16-NOV-16 5BNU 1 OBSLTE REVDAT 1 01-JUN-16 5BNU 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTING PROLIFERATIVE EFFECTS OF ESTROGEN RECEPTOR JRNL TITL 2 LIGANDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 59373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5558 - 3.8500 0.94 4290 141 0.1597 0.1876 REMARK 3 2 3.8500 - 3.0560 0.94 4231 141 0.1739 0.1989 REMARK 3 3 3.0560 - 2.6698 0.98 4370 142 0.1825 0.1963 REMARK 3 4 2.6698 - 2.4257 0.99 4403 150 0.1831 0.1897 REMARK 3 5 2.4257 - 2.2518 0.95 4228 138 0.1831 0.2351 REMARK 3 6 2.2518 - 2.1191 0.90 3998 137 0.1958 0.2264 REMARK 3 7 2.1191 - 2.0129 0.95 4216 148 0.2003 0.2360 REMARK 3 8 2.0129 - 1.9253 0.93 4151 130 0.2160 0.2587 REMARK 3 9 1.9253 - 1.8512 0.86 3816 128 0.2593 0.3192 REMARK 3 10 1.8512 - 1.7873 0.93 4110 146 0.2138 0.2552 REMARK 3 11 1.7873 - 1.7314 0.91 4026 142 0.2141 0.2255 REMARK 3 12 1.7314 - 1.6819 0.91 4045 137 0.2204 0.2742 REMARK 3 13 1.6819 - 1.6376 0.89 3917 125 0.2231 0.2684 REMARK 3 14 1.6376 - 1.6000 0.82 3643 124 0.2346 0.2675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4047 REMARK 3 ANGLE : 1.050 5504 REMARK 3 CHIRALITY : 0.043 645 REMARK 3 PLANARITY : 0.005 683 REMARK 3 DIHEDRAL : 15.063 1522 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 303:333) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5577 -13.3215 6.0311 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.2643 REMARK 3 T33: 0.1752 T12: -0.0134 REMARK 3 T13: -0.0188 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 4.1557 L22: 4.6063 REMARK 3 L33: 2.9716 L12: 1.6851 REMARK 3 L13: -0.6881 L23: -0.5604 REMARK 3 S TENSOR REMARK 3 S11: 0.1799 S12: -0.4497 S13: 0.3378 REMARK 3 S21: 0.2337 S22: -0.3551 S23: 0.1618 REMARK 3 S31: -0.1925 S32: 0.1664 S33: 0.2296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 334:486) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3067 -20.7477 -3.5689 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1437 REMARK 3 T33: 0.1403 T12: -0.0050 REMARK 3 T13: -0.0134 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.5541 L22: 1.6123 REMARK 3 L33: 2.2131 L12: 0.5737 REMARK 3 L13: -0.8019 L23: -0.8370 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -0.0187 S13: -0.1141 REMARK 3 S21: -0.0892 S22: -0.0099 S23: -0.0221 REMARK 3 S31: 0.1963 S32: -0.0201 S33: 0.0274 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 487:548) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1785 -20.6581 -9.2787 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.1232 REMARK 3 T33: 0.1404 T12: -0.0080 REMARK 3 T13: 0.0107 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.8255 L22: 1.5017 REMARK 3 L33: 1.7815 L12: -0.0960 REMARK 3 L13: -0.4161 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.1335 S13: -0.1451 REMARK 3 S21: -0.0552 S22: -0.0527 S23: 0.1131 REMARK 3 S31: 0.1078 S32: -0.1615 S33: 0.0598 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 306:410) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8991 -19.9810 -34.2233 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.1996 REMARK 3 T33: 0.1674 T12: 0.0094 REMARK 3 T13: 0.0289 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.4240 L22: 1.4171 REMARK 3 L33: 3.8490 L12: 0.6425 REMARK 3 L13: -0.0061 L23: -0.2265 REMARK 3 S TENSOR REMARK 3 S11: -0.1345 S12: 0.1337 S13: -0.0829 REMARK 3 S21: -0.1151 S22: 0.0638 S23: -0.0862 REMARK 3 S31: 0.0303 S32: 0.0810 S33: 0.0399 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 411:486) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0937 -17.3529 -22.7499 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.2262 REMARK 3 T33: 0.1325 T12: 0.0161 REMARK 3 T13: 0.0292 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.3747 L22: 2.3168 REMARK 3 L33: 4.3342 L12: 0.0352 REMARK 3 L13: -0.0661 L23: -0.2586 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: 0.0513 S13: 0.0319 REMARK 3 S21: 0.0151 S22: -0.0006 S23: 0.0356 REMARK 3 S31: -0.1315 S32: -0.0754 S33: 0.0321 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 487:548) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0090 -17.7386 -21.9375 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.1714 REMARK 3 T33: 0.1905 T12: 0.0033 REMARK 3 T13: 0.0171 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.9078 L22: 1.0459 REMARK 3 L33: 4.1546 L12: -0.7538 REMARK 3 L13: -0.0191 L23: 0.6995 REMARK 3 S TENSOR REMARK 3 S11: -0.0649 S12: 0.0177 S13: -0.0666 REMARK 3 S21: -0.1296 S22: -0.1078 S23: 0.0871 REMARK 3 S31: -0.0048 S32: -0.2733 S33: 0.1596 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2QA8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.78000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 SER B 305 REMARK 465 CYS B 417 REMARK 465 VAL B 418 REMARK 465 GLU B 419 REMARK 465 GLY B 420 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 SER B 527 REMARK 465 MET B 528 REMARK 465 LYS B 529 REMARK 465 CYS B 530 REMARK 465 LYS B 531 REMARK 465 ASN B 532 REMARK 465 VAL B 533 REMARK 465 HIS D 687 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 534 CG1 CG2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 696 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 794 O HOH B 841 1.91 REMARK 500 O HOH D 704 O HOH D 706 1.92 REMARK 500 O HOH B 840 O HOH B 841 1.97 REMARK 500 O HOH A 867 O HOH A 871 1.97 REMARK 500 OE1 GLU A 330 O HOH A 701 1.98 REMARK 500 O HOH B 701 O HOH B 815 2.04 REMARK 500 ND1 HIS A 513 O HOH A 702 2.06 REMARK 500 O HOH B 804 O HOH B 835 2.07 REMARK 500 CL1 OB7 A 601 O HOH A 854 2.08 REMARK 500 O HOH A 838 O HOH B 845 2.11 REMARK 500 O HOH A 826 O HOH A 868 2.12 REMARK 500 SG CYS A 381 O HOH A 878 2.13 REMARK 500 SG CYS B 381 O HOH B 855 2.13 REMARK 500 O HOH A 806 O HOH A 875 2.18 REMARK 500 NZ LYS B 492 O HOH B 701 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 889 O HOH B 774 2555 1.89 REMARK 500 O TYR A 331 NH2 ARG D 692 1556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OB7 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OB6 B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PP6 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH RESVERATROL REMARK 900 RELATED ID: 4ZN7 RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH REMARK 900 DIETHYLSTILBESTROL REMARK 900 RELATED ID: 4ZN9 RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH OXABICYCLIC REMARK 900 HEPTENE SULFONATE REMARK 900 RELATED ID: 4ZNH RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 2-FLUORO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNS RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 3-FLUORO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNT RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 3-BROMO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNU RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 2-METHYL- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNV RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 2-METHOXY- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNW RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 4-BROMO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZUB RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH OXABICYCLIC REMARK 900 HEPTENE SULFONAMIDE (OBHS-N) REMARK 900 RELATED ID: 4ZUC RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-METHYL REMARK 900 SUBSTITUTED OBHS-N DERIVATIVE REMARK 900 RELATED ID: 4ZWH RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-METHYL, REMARK 900 2-CHLOROBENZYL OBHS-N DERIVATIVE REMARK 900 RELATED ID: 4ZWK RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-ETHYL, REMARK 900 4-METHOXYBENZYL OBHS-N DERIVATIVE REMARK 900 RELATED ID: 5BP6 RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-ETHYL, REMARK 900 ALPHA-NAPHTHYL OBHS-N DERIVATIVE REMARK 900 RELATED ID: 5BPR RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N- REMARK 900 TRIFLUOROETHYL OBHS-N DERIVATIVE DBREF 5BNU A 303 548 UNP P03372 ESR1_HUMAN 303 548 DBREF 5BNU B 303 548 UNP P03372 ESR1_HUMAN 303 548 DBREF 5BNU C 687 696 UNP Q15596 NCOA2_HUMAN 687 696 DBREF 5BNU D 687 696 UNP Q15596 NCOA2_HUMAN 687 696 SEQADV 5BNU SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5BNU SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 246 LYS ASN SER LEU ALA LEU SER LEU THR ALA ASP GLN MET SEQRES 2 A 246 VAL SER ALA LEU LEU ASP ALA GLU PRO PRO ILE LEU TYR SEQRES 3 A 246 SER GLU TYR ASP PRO THR ARG PRO PHE SER GLU ALA SER SEQRES 4 A 246 MET MET GLY LEU LEU THR ASN LEU ALA ASP ARG GLU LEU SEQRES 5 A 246 VAL HIS MET ILE ASN TRP ALA LYS ARG VAL PRO GLY PHE SEQRES 6 A 246 VAL ASP LEU THR LEU HIS ASP GLN VAL HIS LEU LEU GLU SEQRES 7 A 246 CYS ALA TRP LEU GLU ILE LEU MET ILE GLY LEU VAL TRP SEQRES 8 A 246 ARG SER MET GLU HIS PRO GLY LYS LEU LEU PHE ALA PRO SEQRES 9 A 246 ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS CYS VAL GLU SEQRES 10 A 246 GLY MET VAL GLU ILE PHE ASP MET LEU LEU ALA THR SER SEQRES 11 A 246 SER ARG PHE ARG MET MET ASN LEU GLN GLY GLU GLU PHE SEQRES 12 A 246 VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SER GLY VAL SEQRES 13 A 246 TYR THR PHE LEU SER SER THR LEU LYS SER LEU GLU GLU SEQRES 14 A 246 LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS ILE THR ASP SEQRES 15 A 246 THR LEU ILE HIS LEU MET ALA LYS ALA GLY LEU THR LEU SEQRES 16 A 246 GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU LEU LEU ILE SEQRES 17 A 246 LEU SER HIS ILE ARG HIS MET SER ASN LYS GLY MET GLU SEQRES 18 A 246 HIS LEU TYR SER MET LYS CYS LYS ASN VAL VAL PRO LEU SEQRES 19 A 246 SER ASP LEU LEU LEU GLU MET LEU ASP ALA HIS ARG SEQRES 1 B 246 LYS ASN SER LEU ALA LEU SER LEU THR ALA ASP GLN MET SEQRES 2 B 246 VAL SER ALA LEU LEU ASP ALA GLU PRO PRO ILE LEU TYR SEQRES 3 B 246 SER GLU TYR ASP PRO THR ARG PRO PHE SER GLU ALA SER SEQRES 4 B 246 MET MET GLY LEU LEU THR ASN LEU ALA ASP ARG GLU LEU SEQRES 5 B 246 VAL HIS MET ILE ASN TRP ALA LYS ARG VAL PRO GLY PHE SEQRES 6 B 246 VAL ASP LEU THR LEU HIS ASP GLN VAL HIS LEU LEU GLU SEQRES 7 B 246 CYS ALA TRP LEU GLU ILE LEU MET ILE GLY LEU VAL TRP SEQRES 8 B 246 ARG SER MET GLU HIS PRO GLY LYS LEU LEU PHE ALA PRO SEQRES 9 B 246 ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS CYS VAL GLU SEQRES 10 B 246 GLY MET VAL GLU ILE PHE ASP MET LEU LEU ALA THR SER SEQRES 11 B 246 SER ARG PHE ARG MET MET ASN LEU GLN GLY GLU GLU PHE SEQRES 12 B 246 VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SER GLY VAL SEQRES 13 B 246 TYR THR PHE LEU SER SER THR LEU LYS SER LEU GLU GLU SEQRES 14 B 246 LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS ILE THR ASP SEQRES 15 B 246 THR LEU ILE HIS LEU MET ALA LYS ALA GLY LEU THR LEU SEQRES 16 B 246 GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU LEU LEU ILE SEQRES 17 B 246 LEU SER HIS ILE ARG HIS MET SER ASN LYS GLY MET GLU SEQRES 18 B 246 HIS LEU TYR SER MET LYS CYS LYS ASN VAL VAL PRO LEU SEQRES 19 B 246 SER ASP LEU LEU LEU GLU MET LEU ASP ALA HIS ARG SEQRES 1 C 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SEQRES 1 D 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP HET OB7 A 601 34 HET OB6 B 601 34 HETNAM OB7 (1R,2S,4R)-N-(4-CHLOROPHENYL)-N-ETHYL-5,6-BIS(4- HETNAM 2 OB7 HYDROXYPHENYL)-7-OXABICYCLO[2.2.1]HEPT-5-ENE-2- HETNAM 3 OB7 SULFONAMIDE HETNAM OB6 (1S,2R,4S)-N-(4-CHLOROPHENYL)-N-ETHYL-5,6-BIS(4- HETNAM 2 OB6 HYDROXYPHENYL)-7-OXABICYCLO[2.2.1]HEPT-5-ENE-2- HETNAM 3 OB6 SULFONAMIDE FORMUL 5 OB7 C26 H24 CL N O5 S FORMUL 6 OB6 C26 H24 CL N O5 S FORMUL 7 HOH *369(H2 O) HELIX 1 AA1 SER A 305 LEU A 310 5 6 HELIX 2 AA2 THR A 311 GLU A 323 1 13 HELIX 3 AA3 SER A 338 LYS A 362 1 25 HELIX 4 AA4 GLY A 366 LEU A 370 5 5 HELIX 5 AA5 THR A 371 SER A 395 1 25 HELIX 6 AA6 ARG A 412 LYS A 416 1 5 HELIX 7 AA7 GLY A 420 MET A 438 1 19 HELIX 8 AA8 GLN A 441 SER A 456 1 16 HELIX 9 AA9 ASP A 473 ALA A 493 1 21 HELIX 10 AB1 THR A 496 ASN A 532 1 37 HELIX 11 AB2 SER A 537 ALA A 546 1 10 HELIX 12 AB3 HIS A 547 ARG A 548 5 2 HELIX 13 AB4 LEU B 306 LEU B 310 5 5 HELIX 14 AB5 THR B 311 ALA B 322 1 12 HELIX 15 AB6 SER B 338 LYS B 362 1 25 HELIX 16 AB7 GLY B 366 LEU B 370 5 5 HELIX 17 AB8 THR B 371 SER B 395 1 25 HELIX 18 AB9 VAL B 422 MET B 438 1 17 HELIX 19 AC1 GLN B 441 SER B 456 1 16 HELIX 20 AC2 LEU B 469 ALA B 493 1 25 HELIX 21 AC3 THR B 496 TYR B 526 1 31 HELIX 22 AC4 SER B 537 ALA B 546 1 10 HELIX 23 AC5 LYS C 688 LEU C 694 1 7 HELIX 24 AC6 ILE D 689 ASP D 696 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 SITE 1 AC1 17 MET A 343 LEU A 346 THR A 347 ALA A 350 SITE 2 AC1 17 GLU A 353 MET A 388 ARG A 394 GLU A 419 SITE 3 AC1 17 GLY A 420 MET A 421 ILE A 424 PHE A 425 SITE 4 AC1 17 LEU A 428 GLY A 521 HIS A 524 LEU A 540 SITE 5 AC1 17 HOH A 854 SITE 1 AC2 13 LEU B 346 THR B 347 ALA B 350 GLU B 353 SITE 2 AC2 13 LEU B 387 ARG B 394 MET B 421 ILE B 424 SITE 3 AC2 13 GLY B 521 LEU B 525 LEU B 540 LEU B 544 SITE 4 AC2 13 HOH B 752 CRYST1 54.872 81.560 58.914 90.00 110.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018224 0.000000 0.006698 0.00000 SCALE2 0.000000 0.012261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018084 0.00000