HEADER TRANSFERASE 26-MAY-15 5BNW TITLE THE ACTIVE SITE OF O-GLCNAC TRANSFERASE IMPOSES CONSTRAINTS ON TITLE 2 SUBSTRATE SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 197-915; COMPND 6 SYNONYM: O-GLCNAC TRANSFERASE SUBUNIT P110,O-LINKED N- COMPND 7 ACETYLGLUCOSAMINE TRANSFERASE 110 KDA SUBUNIT,OGT; COMPND 8 EC: 2.4.1.255; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: LAMINB1 RESIDUES 179-191; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OGT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS O-GLCNAC TRANSFERASE, GLYCOSYL TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PATHAK,J.ALONSO,M.SCHIMPL,K.RAFIE,D.E.BLAIR,V.S.BORODKIN, AUTHOR 2 O.ALBARBARAWI,D.M.F.VAN AALTEN REVDAT 4 10-JAN-24 5BNW 1 REMARK REVDAT 3 16-SEP-15 5BNW 1 JRNL REVDAT 2 12-AUG-15 5BNW 1 JRNL REVDAT 1 05-AUG-15 5BNW 0 JRNL AUTH S.PATHAK,J.ALONSO,M.SCHIMPL,K.RAFIE,D.E.BLAIR,V.S.BORODKIN, JRNL AUTH 2 A.W.SCHUTTELKOPF,O.ALBARBARAWI,D.M.VAN AALTEN JRNL TITL THE ACTIVE SITE OF O-GLCNAC TRANSFERASE IMPOSES CONSTRAINTS JRNL TITL 2 ON SUBSTRATE SEQUENCE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 744 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 26237509 JRNL DOI 10.1038/NSMB.3063 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49000 REMARK 3 B22 (A**2) : 2.89000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.274 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5705 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5461 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7739 ; 1.492 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12574 ; 0.820 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 698 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;39.512 ;24.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 981 ;15.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 862 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6426 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1299 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2804 ; 3.027 ; 4.364 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2803 ; 3.027 ; 4.363 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3498 ; 4.584 ; 6.535 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3499 ; 4.584 ; 6.537 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2899 ; 3.424 ; 4.726 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2899 ; 3.423 ; 4.726 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4242 ; 5.515 ; 6.920 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6521 ; 7.573 ;34.325 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6504 ; 7.577 ;34.333 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : PILATUS 2M DETECTOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 0.5 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.71900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3PE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M DL-MALIC ACID PH 6.4, 0.1 M BIS REMARK 280 -TRIS PROPANE PH 6.4 SUPPLEMENTED WITH CRYSTAL SEEDS GROWN OUT REMARK 280 OF THE SAME CONDITION., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.08800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.62050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.08800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.62050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.08800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.62050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.08800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.62050 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 99.62050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 99.62050 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.62050 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 99.62050 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.08800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 75.08800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 75.08800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 69.09150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 75.08800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 309 REMARK 465 PRO A 310 REMARK 465 GLY A 311 REMARK 465 SER A 312 REMARK 465 CYS A 313 REMARK 465 PHE A 713 REMARK 465 LYS A 714 REMARK 465 SER A 715 REMARK 465 ASN A 716 REMARK 465 GLY A 717 REMARK 465 HIS A 718 REMARK 465 CYS A 748 REMARK 465 PRO A 749 REMARK 465 ASP A 750 REMARK 465 GLY A 751 REMARK 465 GLY A 752 REMARK 465 ASP A 753 REMARK 465 ASN A 754 REMARK 465 ALA A 755 REMARK 465 ASP A 756 REMARK 465 SER A 757 REMARK 465 SER A 758 REMARK 465 ASN A 759 REMARK 465 THR A 760 REMARK 465 ALA A 761 REMARK 465 LEU A 762 REMARK 465 PRO A 1029 REMARK 465 VAL A 1030 REMARK 465 GLU A 1031 REMARK 465 LYS D 179 REMARK 465 LEU D 180 REMARK 465 SER D 181 REMARK 465 PRO D 182 REMARK 465 SER D 183 REMARK 465 PRO D 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 620 OE1 GLN A 620 3555 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 994 C PRO A 995 N 0.232 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 349 35.06 -82.47 REMARK 500 ASN A 434 76.56 -117.30 REMARK 500 PRO A 504 46.48 -77.30 REMARK 500 LEU A 653 -53.22 87.43 REMARK 500 THR A 669 -153.84 -166.17 REMARK 500 HIS A 691 -95.53 -116.72 REMARK 500 ASN A 722 27.54 -148.76 REMARK 500 ASN A 804 99.41 -162.35 REMARK 500 PHE A 868 57.51 -148.41 REMARK 500 HIS A 920 -89.56 -107.40 REMARK 500 CYS A 955 68.05 -114.79 REMARK 500 ALA A1019 13.71 -69.44 REMARK 500 ILE A1027 54.68 -94.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 769 ASN A 770 -145.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 994 12.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 12V A 1101 DBREF 5BNW A 313 1031 UNP O15294 OGT1_HUMAN 197 915 DBREF 5BNW D 179 191 PDB 5BNW 5BNW 179 191 SEQADV 5BNW GLY A 309 UNP O15294 EXPRESSION TAG SEQADV 5BNW PRO A 310 UNP O15294 EXPRESSION TAG SEQADV 5BNW GLY A 311 UNP O15294 EXPRESSION TAG SEQADV 5BNW SER A 312 UNP O15294 EXPRESSION TAG SEQRES 1 A 723 GLY PRO GLY SER CYS PRO THR HIS ALA ASP SER LEU ASN SEQRES 2 A 723 ASN LEU ALA ASN ILE LYS ARG GLU GLN GLY ASN ILE GLU SEQRES 3 A 723 GLU ALA VAL ARG LEU TYR ARG LYS ALA LEU GLU VAL PHE SEQRES 4 A 723 PRO GLU PHE ALA ALA ALA HIS SER ASN LEU ALA SER VAL SEQRES 5 A 723 LEU GLN GLN GLN GLY LYS LEU GLN GLU ALA LEU MET HIS SEQRES 6 A 723 TYR LYS GLU ALA ILE ARG ILE SER PRO THR PHE ALA ASP SEQRES 7 A 723 ALA TYR SER ASN MET GLY ASN THR LEU LYS GLU MET GLN SEQRES 8 A 723 ASP VAL GLN GLY ALA LEU GLN CYS TYR THR ARG ALA ILE SEQRES 9 A 723 GLN ILE ASN PRO ALA PHE ALA ASP ALA HIS SER ASN LEU SEQRES 10 A 723 ALA SER ILE HIS LYS ASP SER GLY ASN ILE PRO GLU ALA SEQRES 11 A 723 ILE ALA SER TYR ARG THR ALA LEU LYS LEU LYS PRO ASP SEQRES 12 A 723 PHE PRO ASP ALA TYR CYS ASN LEU ALA HIS CYS LEU GLN SEQRES 13 A 723 ILE VAL CYS ASP TRP THR ASP TYR ASP GLU ARG MET LYS SEQRES 14 A 723 LYS LEU VAL SER ILE VAL ALA ASP GLN LEU GLU LYS ASN SEQRES 15 A 723 ARG LEU PRO SER VAL HIS PRO HIS HIS SER MET LEU TYR SEQRES 16 A 723 PRO LEU SER HIS GLY PHE ARG LYS ALA ILE ALA GLU ARG SEQRES 17 A 723 HIS GLY ASN LEU CYS LEU ASP LYS ILE ASN VAL LEU HIS SEQRES 18 A 723 LYS PRO PRO TYR GLU HIS PRO LYS ASP LEU LYS LEU SER SEQRES 19 A 723 ASP GLY ARG LEU ARG VAL GLY TYR VAL SER SER ASP PHE SEQRES 20 A 723 GLY ASN HIS PRO THR SER HIS LEU MET GLN SER ILE PRO SEQRES 21 A 723 GLY MET HIS ASN PRO ASP LYS PHE GLU VAL PHE CYS TYR SEQRES 22 A 723 ALA LEU SER PRO ASP ASP GLY THR ASN PHE ARG VAL LYS SEQRES 23 A 723 VAL MET ALA GLU ALA ASN HIS PHE ILE ASP LEU SER GLN SEQRES 24 A 723 ILE PRO CYS ASN GLY LYS ALA ALA ASP ARG ILE HIS GLN SEQRES 25 A 723 ASP GLY ILE HIS ILE LEU VAL ASN MET ASN GLY TYR THR SEQRES 26 A 723 LYS GLY ALA ARG ASN GLU LEU PHE ALA LEU ARG PRO ALA SEQRES 27 A 723 PRO ILE GLN ALA MET TRP LEU GLY TYR PRO GLY THR SER SEQRES 28 A 723 GLY ALA LEU PHE MET ASP TYR ILE ILE THR ASP GLN GLU SEQRES 29 A 723 THR SER PRO ALA GLU VAL ALA GLU GLN TYR SER GLU LYS SEQRES 30 A 723 LEU ALA TYR MET PRO HIS THR PHE PHE ILE GLY ASP HIS SEQRES 31 A 723 ALA ASN MET PHE PRO HIS LEU LYS LYS LYS ALA VAL ILE SEQRES 32 A 723 ASP PHE LYS SER ASN GLY HIS ILE TYR ASP ASN ARG ILE SEQRES 33 A 723 VAL LEU ASN GLY ILE ASP LEU LYS ALA PHE LEU ASP SER SEQRES 34 A 723 LEU PRO ASP VAL LYS ILE VAL LYS MET LYS CYS PRO ASP SEQRES 35 A 723 GLY GLY ASP ASN ALA ASP SER SER ASN THR ALA LEU ASN SEQRES 36 A 723 MET PRO VAL ILE PRO MET ASN THR ILE ALA GLU ALA VAL SEQRES 37 A 723 ILE GLU MET ILE ASN ARG GLY GLN ILE GLN ILE THR ILE SEQRES 38 A 723 ASN GLY PHE SER ILE SER ASN GLY LEU ALA THR THR GLN SEQRES 39 A 723 ILE ASN ASN LYS ALA ALA THR GLY GLU GLU VAL PRO ARG SEQRES 40 A 723 THR ILE ILE VAL THR THR ARG SER GLN TYR GLY LEU PRO SEQRES 41 A 723 GLU ASP ALA ILE VAL TYR CYS ASN PHE ASN GLN LEU TYR SEQRES 42 A 723 LYS ILE ASP PRO SER THR LEU GLN MET TRP ALA ASN ILE SEQRES 43 A 723 LEU LYS ARG VAL PRO ASN SER VAL LEU TRP LEU LEU ARG SEQRES 44 A 723 PHE PRO ALA VAL GLY GLU PRO ASN ILE GLN GLN TYR ALA SEQRES 45 A 723 GLN ASN MET GLY LEU PRO GLN ASN ARG ILE ILE PHE SER SEQRES 46 A 723 PRO VAL ALA PRO LYS GLU GLU HIS VAL ARG ARG GLY GLN SEQRES 47 A 723 LEU ALA ASP VAL CYS LEU ASP THR PRO LEU CYS ASN GLY SEQRES 48 A 723 HIS THR THR GLY MET ASP VAL LEU TRP ALA GLY THR PRO SEQRES 49 A 723 MET VAL THR MET PRO GLY GLU THR LEU ALA SER ARG VAL SEQRES 50 A 723 ALA ALA SER GLN LEU THR CYS LEU GLY CYS LEU GLU LEU SEQRES 51 A 723 ILE ALA LYS ASN ARG GLN GLU TYR GLU ASP ILE ALA VAL SEQRES 52 A 723 LYS LEU GLY THR ASP LEU GLU TYR LEU LYS LYS VAL ARG SEQRES 53 A 723 GLY LYS VAL TRP LYS GLN ARG ILE SER SER PRO LEU PHE SEQRES 54 A 723 ASN THR LYS GLN TYR THR MET GLU LEU GLU ARG LEU TYR SEQRES 55 A 723 LEU GLN MET TRP GLU HIS TYR ALA ALA GLY ASN LYS PRO SEQRES 56 A 723 ASP HIS MET ILE LYS PRO VAL GLU SEQRES 1 D 13 LYS LEU SER PRO SER PRO SER SER ARG VAL THR VAL SER HET 12V A1101 39 HETNAM 12V (2S,3R,4R,5S,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6- HETNAM 2 12V (HYDROXYMETHYL)TETRAHYDRO-2H-THIOPYRAN-2-YL [(2R,3S, HETNAM 3 12V 4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3, HETNAM 4 12V 4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETNAM 5 12V DIPHOSPHATE HETSYN 12V URIDINE DIPHOSPHO-5-THIO-N-ACETYLGLUCOSAMINE FORMUL 3 12V C17 H27 N3 O16 P2 S FORMUL 4 HOH *78(H2 O) HELIX 1 AA1 PRO A 314 GLY A 331 1 18 HELIX 2 AA2 ASN A 332 PHE A 347 1 16 HELIX 3 AA3 PHE A 350 GLN A 364 1 15 HELIX 4 AA4 LYS A 366 SER A 381 1 16 HELIX 5 AA5 PHE A 384 MET A 398 1 15 HELIX 6 AA6 ASP A 400 ASN A 415 1 16 HELIX 7 AA7 PHE A 418 SER A 432 1 15 HELIX 8 AA8 ASN A 434 LYS A 449 1 16 HELIX 9 AA9 PHE A 452 CYS A 467 1 16 HELIX 10 AB1 ASP A 471 LYS A 489 1 19 HELIX 11 AB2 HIS A 496 TYR A 503 5 8 HELIX 12 AB3 SER A 506 VAL A 527 1 22 HELIX 13 AB4 LEU A 539 ASP A 543 5 5 HELIX 14 AB5 HIS A 558 GLN A 565 1 8 HELIX 15 AB6 SER A 566 HIS A 571 1 6 HELIX 16 AB7 THR A 589 ALA A 599 1 11 HELIX 17 AB8 SER A 606 ILE A 608 5 3 HELIX 18 AB9 CYS A 610 ASP A 621 1 12 HELIX 19 AC1 ARG A 637 LEU A 643 1 7 HELIX 20 AC2 PRO A 675 TYR A 682 5 8 HELIX 21 AC3 ASP A 697 PHE A 702 1 6 HELIX 22 AC4 PRO A 703 LYS A 706 5 4 HELIX 23 AC5 ASP A 730 SER A 737 1 8 HELIX 24 AC6 ASN A 770 GLY A 783 1 14 HELIX 25 AC7 ALA A 799 ASN A 804 1 6 HELIX 26 AC8 ASN A 804 THR A 809 1 6 HELIX 27 AC9 SER A 823 GLY A 826 5 4 HELIX 28 AD1 GLN A 839 ILE A 843 5 5 HELIX 29 AD2 ASP A 844 VAL A 858 1 15 HELIX 30 AD3 PRO A 869 VAL A 871 5 3 HELIX 31 AD4 GLY A 872 GLY A 884 1 13 HELIX 32 AD5 PRO A 886 ASN A 888 5 3 HELIX 33 AD6 PRO A 897 GLN A 906 1 10 HELIX 34 AD7 HIS A 920 ALA A 929 1 10 HELIX 35 AD8 THR A 940 SER A 943 5 4 HELIX 36 AD9 ARG A 944 GLY A 954 1 11 HELIX 37 AE1 CYS A 955 ILE A 959 5 5 HELIX 38 AE2 ASN A 962 ASP A 976 1 15 HELIX 39 AE3 ASP A 976 SER A 994 1 19 HELIX 40 AE4 ASN A 998 ALA A 1019 1 22 SHEET 1 AA1 7 HIS A 601 ASP A 604 0 SHEET 2 AA1 7 PHE A 576 ALA A 582 1 N CYS A 580 O ILE A 603 SHEET 3 AA1 7 LEU A 546 SER A 552 1 N VAL A 548 O PHE A 579 SHEET 4 AA1 7 ILE A 625 ASN A 628 1 O VAL A 627 N GLY A 549 SHEET 5 AA1 7 ILE A 648 MET A 651 1 O ALA A 650 N ASN A 628 SHEET 6 AA1 7 TYR A 666 THR A 669 1 O TYR A 666 N MET A 651 SHEET 7 AA1 7 LYS A 685 TYR A 688 1 O ALA A 687 N THR A 669 SHEET 1 AA2 7 LYS A 742 VAL A 744 0 SHEET 2 AA2 7 MET A 764 ILE A 767 -1 O VAL A 766 N LYS A 742 SHEET 3 AA2 7 ALA A 709 ILE A 711 1 N VAL A 710 O ILE A 767 SHEET 4 AA2 7 ILE A 724 ASN A 727 -1 O LEU A 726 N ALA A 709 SHEET 5 AA2 7 ILE A 817 THR A 821 -1 O THR A 820 N VAL A 725 SHEET 6 AA2 7 PHE A 792 ASN A 796 1 N SER A 795 O ILE A 817 SHEET 7 AA2 7 GLN A 786 ILE A 789 -1 N ILE A 787 O ILE A 794 SHEET 1 AA3 5 ILE A 890 PRO A 894 0 SHEET 2 AA3 5 SER A 861 ARG A 867 1 N ARG A 867 O SER A 893 SHEET 3 AA3 5 ILE A 832 ASN A 836 1 N TYR A 834 O TRP A 864 SHEET 4 AA3 5 VAL A 910 LEU A 912 1 O VAL A 910 N CYS A 835 SHEET 5 AA3 5 MET A 933 VAL A 934 1 O VAL A 934 N CYS A 911 CISPEP 1 PHE A 868 PRO A 869 0 12.82 SITE 1 AC1 31 HIS A 498 PRO A 559 THR A 560 LEU A 563 SITE 2 AC1 31 LEU A 653 PRO A 656 PHE A 694 GLN A 839 SITE 3 AC1 31 TYR A 841 LYS A 842 LEU A 866 VAL A 895 SITE 4 AC1 31 ALA A 896 LYS A 898 HIS A 901 ARG A 904 SITE 5 AC1 31 CYS A 917 HIS A 920 THR A 921 THR A 922 SITE 6 AC1 31 ASP A 925 HOH A1205 HOH A1222 HOH A1227 SITE 7 AC1 31 HOH A1240 HOH A1271 SER D 186 ARG D 187 SITE 8 AC1 31 VAL D 188 THR D 189 HOH D 201 CRYST1 138.183 150.176 199.241 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005019 0.00000