HEADER PROTEIN BINDING 27-MAY-15 5BP5 TITLE CRYSTAL STRUCTURE OF HA17-HA33-IPT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HA-33; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HA-33 PROTEIN,HA33,HA34,NON-TOXIN HAEMAGGLUTININ HA34; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HA-17; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: HA-17 PROTEIN,HA17,HA17 PROTEIN,NON-TOXIN HAEMAGGLUTININ COMPND 10 HA17; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: HA-33, HA33, HA34; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-RIL (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 12 ORGANISM_TAXID: 1491; SOURCE 13 GENE: HA17, HA-17; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21-RIL (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1 KEYWDS BOTULINUM NEUROTOXIN A, HEMAGGLUTININ, IPTG, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.LEE,K.LAM,R.JIN REVDAT 7 27-DEC-23 5BP5 1 REMARK HETSYN REVDAT 6 29-JUL-20 5BP5 1 COMPND REMARK HETNAM SITE REVDAT 5 11-DEC-19 5BP5 1 REMARK REVDAT 4 01-NOV-17 5BP5 1 REMARK REVDAT 3 20-SEP-17 5BP5 1 REMARK REVDAT 2 09-DEC-15 5BP5 1 JRNL REVDAT 1 02-SEP-15 5BP5 0 JRNL AUTH K.LEE,K.H.LAM,A.M.KRUEL,S.MAHRHOLD,K.PERRY,L.W.CHENG, JRNL AUTH 2 A.RUMMEL,R.JIN JRNL TITL INHIBITING ORAL INTOXICATION OF BOTULINUM NEUROTOXIN A JRNL TITL 2 COMPLEX BY CARBOHYDRATE RECEPTOR MIMICS. JRNL REF TOXICON V. 107 43 2015 JRNL REFN ISSN 0041-0101 JRNL PMID 26272706 JRNL DOI 10.1016/J.TOXICON.2015.08.003 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 50625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5842 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.39000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 1.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5BP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000200319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 47.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.1 M MAGNESIUM CHLORIDE, REMARK 280 5% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.09850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.09850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.93400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.46400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.93400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.46400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.09850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.93400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.46400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.09850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.93400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.46400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER ACCORDING TO GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 2 REMARK 465 HIS A 3 REMARK 465 TYR A 4 REMARK 465 SER A 5 REMARK 465 VAL A 6 REMARK 465 ILE A 7 REMARK 465 GLN A 8 REMARK 465 GLY A 295 REMARK 465 SER A 296 REMARK 465 ALA A 297 REMARK 465 GLY C -1 REMARK 465 PRO C 0 REMARK 465 SER C 1 REMARK 465 GLU B 2 REMARK 465 HIS B 3 REMARK 465 TYR B 4 REMARK 465 SER B 5 REMARK 465 VAL B 6 REMARK 465 ILE B 7 REMARK 465 GLN B 8 REMARK 465 ASN B 9 REMARK 465 GLY B 295 REMARK 465 SER B 296 REMARK 465 ALA B 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE C 145 CG1 CG2 CD1 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN B 231 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 229 CB CG OD1 ND2 REMARK 480 GLU B 197 CG CD OE1 OE2 REMARK 480 TRP B 215 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 480 TRP B 215 CZ3 CH2 REMARK 480 PHE B 217 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG B 224 CD NE CZ NH1 NH2 REMARK 480 ASN B 232 CG OD1 ND2 REMARK 480 ASP B 234 CG OD1 OD2 REMARK 480 ASP B 245 CG OD1 OD2 REMARK 480 ASP B 247 CG OD1 OD2 REMARK 480 LYS B 260 CG CD CE NZ REMARK 480 GLN B 276 N CA CB CG CD OE1 NE2 REMARK 480 PHE B 278 CG CD1 CD2 CE1 CE2 CZ REMARK 480 HIS B 281 CG ND1 CD2 CE1 NE2 REMARK 480 ASP B 283 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLN B 231 O HOH B 401 1.95 REMARK 500 N ASN B 232 O HOH B 401 2.09 REMARK 500 OD1 ASP C 78 O HOH C 201 2.18 REMARK 500 NZ LYS B 139 O HOH B 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 232 70.99 -119.30 REMARK 500 SER C 28 -127.48 49.15 REMARK 500 SER C 38 18.06 55.90 REMARK 500 ASP B 23 98.60 -161.28 REMARK 500 ASN B 219 55.22 -152.29 REMARK 500 ASP B 245 4.57 80.49 REMARK 500 TYR B 265 108.79 -48.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LO0 RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN DBREF 5BP5 A 2 293 UNP Q45871 Q45871_CLOBO 2 293 DBREF 5BP5 C 1 145 UNP Q45878 Q45878_CLOBO 2 146 DBREF 5BP5 B 2 293 UNP Q45871 Q45871_CLOBO 2 293 SEQADV 5BP5 PRO A 294 UNP Q45871 EXPRESSION TAG SEQADV 5BP5 GLY A 295 UNP Q45871 EXPRESSION TAG SEQADV 5BP5 SER A 296 UNP Q45871 EXPRESSION TAG SEQADV 5BP5 ALA A 297 UNP Q45871 EXPRESSION TAG SEQADV 5BP5 GLY C -1 UNP Q45878 EXPRESSION TAG SEQADV 5BP5 PRO C 0 UNP Q45878 EXPRESSION TAG SEQADV 5BP5 PRO B 294 UNP Q45871 EXPRESSION TAG SEQADV 5BP5 GLY B 295 UNP Q45871 EXPRESSION TAG SEQADV 5BP5 SER B 296 UNP Q45871 EXPRESSION TAG SEQADV 5BP5 ALA B 297 UNP Q45871 EXPRESSION TAG SEQRES 1 A 296 GLU HIS TYR SER VAL ILE GLN ASN SER LEU ASN ASP LYS SEQRES 2 A 296 ILE VAL THR ILE SER CYS LYS ALA ASP THR ASN LEU PHE SEQRES 3 A 296 PHE TYR GLN VAL ALA GLY ASN VAL SER LEU PHE GLN GLN SEQRES 4 A 296 THR ARG ASN TYR LEU GLU ARG TRP ARG LEU ILE TYR ASP SEQRES 5 A 296 SER ASN LYS ALA ALA TYR LYS ILE LYS SER MET ASP ILE SEQRES 6 A 296 HIS ASN THR ASN LEU VAL LEU THR TRP ASN ALA PRO THR SEQRES 7 A 296 HIS ASN ILE SER THR GLN GLN ASP SER ASN ALA ASP ASN SEQRES 8 A 296 GLN TYR TRP LEU LEU LEU LYS ASP ILE GLY ASN ASN SER SEQRES 9 A 296 PHE ILE ILE ALA SER TYR LYS ASN PRO ASN LEU VAL LEU SEQRES 10 A 296 TYR ALA ASP THR VAL ALA ARG ASN LEU LYS LEU SER THR SEQRES 11 A 296 LEU ASN ASN SER ASN TYR ILE LYS PHE ILE ILE GLU ASP SEQRES 12 A 296 TYR ILE ILE SER ASP LEU ASN ASN PHE THR CYS LYS ILE SEQRES 13 A 296 SER PRO ILE LEU ASP LEU ASN LYS VAL VAL GLN GLN VAL SEQRES 14 A 296 ASP VAL THR ASN LEU ASN VAL ASN LEU TYR THR TRP ASP SEQRES 15 A 296 TYR GLY ARG ASN GLN LYS TRP THR ILE ARG TYR ASN GLU SEQRES 16 A 296 GLU LYS ALA ALA TYR GLN PHE PHE ASN THR ILE LEU SER SEQRES 17 A 296 ASN GLY VAL LEU THR TRP ILE PHE SER ASN GLY ASN THR SEQRES 18 A 296 VAL ARG VAL SER SER SER ASN ASP GLN ASN ASN ASP ALA SEQRES 19 A 296 GLN TYR TRP LEU ILE ASN PRO VAL SER ASP THR ASP GLU SEQRES 20 A 296 THR TYR THR ILE THR ASN LEU ARG ASP THR THR LYS ALA SEQRES 21 A 296 LEU ASP LEU TYR GLY GLY GLN THR ALA ASN GLY THR ALA SEQRES 22 A 296 ILE GLN VAL PHE ASN TYR HIS GLY ASP ASP ASN GLN LYS SEQRES 23 A 296 TRP ASN ILE ARG ASN PRO PRO GLY SER ALA SEQRES 1 C 147 GLY PRO SER VAL GLU ARG THR PHE LEU PRO ASN GLY ASN SEQRES 2 C 147 TYR ASN ILE LYS SER ILE PHE SER GLY SER LEU TYR LEU SEQRES 3 C 147 ASN PRO VAL SER LYS SER LEU THR PHE SER ASN GLU SER SEQRES 4 C 147 SER ALA ASN ASN GLN LYS TRP ASN VAL GLU TYR MET ALA SEQRES 5 C 147 GLU ASN ARG CYS PHE LYS ILE SER ASN VAL ALA GLU PRO SEQRES 6 C 147 ASN LYS TYR LEU SER TYR ASP ASN PHE GLY PHE ILE SER SEQRES 7 C 147 LEU ASP SER LEU SER ASN ARG CYS TYR TRP PHE PRO ILE SEQRES 8 C 147 LYS ILE ALA VAL ASN THR TYR ILE MET LEU SER LEU ASN SEQRES 9 C 147 LYS VAL ASN GLU LEU ASP TYR ALA TRP ASP ILE TYR ASP SEQRES 10 C 147 THR ASN GLU ASN ILE LEU SER GLN PRO LEU LEU LEU LEU SEQRES 11 C 147 PRO ASN PHE ASP ILE TYR ASN SER ASN GLN MET PHE LYS SEQRES 12 C 147 LEU GLU LYS ILE SEQRES 1 B 296 GLU HIS TYR SER VAL ILE GLN ASN SER LEU ASN ASP LYS SEQRES 2 B 296 ILE VAL THR ILE SER CYS LYS ALA ASP THR ASN LEU PHE SEQRES 3 B 296 PHE TYR GLN VAL ALA GLY ASN VAL SER LEU PHE GLN GLN SEQRES 4 B 296 THR ARG ASN TYR LEU GLU ARG TRP ARG LEU ILE TYR ASP SEQRES 5 B 296 SER ASN LYS ALA ALA TYR LYS ILE LYS SER MET ASP ILE SEQRES 6 B 296 HIS ASN THR ASN LEU VAL LEU THR TRP ASN ALA PRO THR SEQRES 7 B 296 HIS ASN ILE SER THR GLN GLN ASP SER ASN ALA ASP ASN SEQRES 8 B 296 GLN TYR TRP LEU LEU LEU LYS ASP ILE GLY ASN ASN SER SEQRES 9 B 296 PHE ILE ILE ALA SER TYR LYS ASN PRO ASN LEU VAL LEU SEQRES 10 B 296 TYR ALA ASP THR VAL ALA ARG ASN LEU LYS LEU SER THR SEQRES 11 B 296 LEU ASN ASN SER ASN TYR ILE LYS PHE ILE ILE GLU ASP SEQRES 12 B 296 TYR ILE ILE SER ASP LEU ASN ASN PHE THR CYS LYS ILE SEQRES 13 B 296 SER PRO ILE LEU ASP LEU ASN LYS VAL VAL GLN GLN VAL SEQRES 14 B 296 ASP VAL THR ASN LEU ASN VAL ASN LEU TYR THR TRP ASP SEQRES 15 B 296 TYR GLY ARG ASN GLN LYS TRP THR ILE ARG TYR ASN GLU SEQRES 16 B 296 GLU LYS ALA ALA TYR GLN PHE PHE ASN THR ILE LEU SER SEQRES 17 B 296 ASN GLY VAL LEU THR TRP ILE PHE SER ASN GLY ASN THR SEQRES 18 B 296 VAL ARG VAL SER SER SER ASN ASP GLN ASN ASN ASP ALA SEQRES 19 B 296 GLN TYR TRP LEU ILE ASN PRO VAL SER ASP THR ASP GLU SEQRES 20 B 296 THR TYR THR ILE THR ASN LEU ARG ASP THR THR LYS ALA SEQRES 21 B 296 LEU ASP LEU TYR GLY GLY GLN THR ALA ASN GLY THR ALA SEQRES 22 B 296 ILE GLN VAL PHE ASN TYR HIS GLY ASP ASP ASN GLN LYS SEQRES 23 B 296 TRP ASN ILE ARG ASN PRO PRO GLY SER ALA HET IPT A 301 15 HET IPT B 301 15 HETNAM IPT 1-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOSIDE HETSYN IPT ISOPROPYL-1-BETA-D-THIOGALACTOSIDE; 1-(ISOPROPYLTHIO)- HETSYN 2 IPT BETA-GALACTOPYRANSIDE; 1-METHYLETHYL 1-THIO-BETA-D- HETSYN 3 IPT GALACTOSIDE; 1-METHYLETHYL 1-THIO-D-GALACTOSIDE; 1- HETSYN 4 IPT METHYLETHYL 1-THIO-GALACTOSIDE FORMUL 4 IPT 2(C9 H18 O5 S) FORMUL 6 HOH *171(H2 O) HELIX 1 AA1 ASN A 43 GLU A 46 5 4 HELIX 2 AA2 ALA A 90 GLN A 93 5 4 HELIX 3 AA3 SER A 135 ILE A 138 5 4 HELIX 4 AA4 TYR A 145 ASN A 151 1 7 HELIX 5 AA5 GLY A 185 GLN A 188 5 4 HELIX 6 AA6 PHE A 217 GLY A 220 5 4 HELIX 7 AA7 ASN A 233 GLN A 236 5 4 HELIX 8 AA8 GLY A 266 GLN A 268 5 3 HELIX 9 AA9 ASP A 283 GLN A 286 5 4 HELIX 10 AB1 ALA C 39 GLN C 42 5 4 HELIX 11 AB2 SER C 81 CYS C 84 5 4 HELIX 12 AB3 ASN C 135 GLN C 138 5 4 HELIX 13 AB4 ASN B 43 GLU B 46 5 4 HELIX 14 AB5 ALA B 90 GLN B 93 5 4 HELIX 15 AB6 SER B 135 ILE B 138 5 4 HELIX 16 AB7 TYR B 145 ASN B 151 1 7 HELIX 17 AB8 GLY B 185 GLN B 188 5 4 HELIX 18 AB9 PHE B 217 GLY B 220 5 4 HELIX 19 AC1 GLY B 266 GLN B 268 5 3 HELIX 20 AC2 ASP B 283 GLN B 286 5 4 SHEET 1 AA1 5 ASN A 34 PHE A 38 0 SHEET 2 AA1 5 ASP A 23 VAL A 31 -1 N PHE A 27 O PHE A 38 SHEET 3 AA1 5 ILE A 15 CYS A 20 -1 N ILE A 18 O PHE A 28 SHEET 4 AA1 5 TRP A 48 ASP A 53 -1 O TRP A 48 N VAL A 16 SHEET 5 AA1 5 ALA A 58 SER A 63 -1 O LYS A 62 N ARG A 49 SHEET 1 AA2 4 ASN A 34 PHE A 38 0 SHEET 2 AA2 4 ASP A 23 VAL A 31 -1 N PHE A 27 O PHE A 38 SHEET 3 AA2 4 ILE A 15 CYS A 20 -1 N ILE A 18 O PHE A 28 SHEET 4 AA2 4 PHE A 140 ASP A 144 -1 O ILE A 141 N SER A 19 SHEET 1 AA3 2 LEU A 71 TRP A 75 0 SHEET 2 AA3 2 ILE A 82 GLN A 86 -1 O SER A 83 N THR A 74 SHEET 1 AA4 4 SER A 105 SER A 110 0 SHEET 2 AA4 4 TRP A 95 ASP A 100 -1 N ASP A 100 O SER A 105 SHEET 3 AA4 4 TRP B 95 ASP B 100 -1 O LYS B 99 N LYS A 99 SHEET 4 AA4 4 SER B 105 SER B 110 -1 O ILE B 107 N LEU B 98 SHEET 1 AA5 2 VAL A 117 ASP A 121 0 SHEET 2 AA5 2 ASN A 126 SER A 130 -1 O SER A 130 N VAL A 117 SHEET 1 AA6 7 THR A 154 PRO A 159 0 SHEET 2 AA6 7 TRP A 190 ASN A 195 -1 O TRP A 190 N CYS A 155 SHEET 3 AA6 7 ALA A 200 ASN A 205 -1 O PHE A 204 N THR A 191 SHEET 4 AA6 7 TRP A 238 PRO A 242 -1 O TRP A 238 N TYR A 201 SHEET 5 AA6 7 THR A 249 ASN A 254 -1 O THR A 253 N LEU A 239 SHEET 6 AA6 7 TRP A 288 ARG A 291 -1 O TRP A 288 N TYR A 250 SHEET 7 AA6 7 THR A 154 PRO A 159 -1 N SER A 158 O ASN A 289 SHEET 1 AA7 2 LYS A 165 GLN A 169 0 SHEET 2 AA7 2 VAL A 177 THR A 181 -1 O TYR A 180 N VAL A 166 SHEET 1 AA8 2 GLY A 211 TRP A 215 0 SHEET 2 AA8 2 VAL A 223 SER A 227 -1 O SER A 226 N VAL A 212 SHEET 1 AA9 2 LYS A 260 LEU A 264 0 SHEET 2 AA9 2 ILE A 275 ASN A 279 -1 O PHE A 278 N ALA A 261 SHEET 1 AB1 9 ILE C 75 ASP C 78 0 SHEET 2 AB1 9 GLU C 62 TYR C 69 -1 N SER C 68 O SER C 76 SHEET 3 AB1 9 CYS C 54 ASN C 59 -1 N ILE C 57 O LEU C 67 SHEET 4 AB1 9 TRP C 86 LYS C 90 -1 O TRP C 86 N PHE C 55 SHEET 5 AB1 9 THR C 95 SER C 100 -1 O LEU C 99 N PHE C 87 SHEET 6 AB1 9 PHE C 140 LYS C 144 -1 O PHE C 140 N TYR C 96 SHEET 7 AB1 9 GLY C 10 SER C 16 -1 N LYS C 15 O LYS C 141 SHEET 8 AB1 9 TRP C 44 MET C 49 -1 O VAL C 46 N GLY C 10 SHEET 9 AB1 9 CYS C 54 ASN C 59 -1 O CYS C 54 N MET C 49 SHEET 1 AB2 2 LEU C 22 VAL C 27 0 SHEET 2 AB2 2 SER C 30 ASN C 35 -1 O SER C 34 N TYR C 23 SHEET 1 AB3 2 TYR C 109 ASP C 112 0 SHEET 2 AB3 2 LEU C 126 PRO C 129 -1 O LEU C 126 N ASP C 112 SHEET 1 AB4 4 ALA B 58 SER B 63 0 SHEET 2 AB4 4 TRP B 48 ASP B 53 -1 N ARG B 49 O LYS B 62 SHEET 3 AB4 4 ILE B 15 CYS B 20 -1 N VAL B 16 O TRP B 48 SHEET 4 AB4 4 PHE B 140 ASP B 144 -1 O ILE B 141 N SER B 19 SHEET 1 AB5 2 PHE B 27 VAL B 31 0 SHEET 2 AB5 2 ASN B 34 PHE B 38 -1 O PHE B 38 N PHE B 27 SHEET 1 AB6 2 LEU B 71 TRP B 75 0 SHEET 2 AB6 2 ILE B 82 GLN B 86 -1 O SER B 83 N THR B 74 SHEET 1 AB7 2 VAL B 117 ASP B 121 0 SHEET 2 AB7 2 ASN B 126 SER B 130 -1 O SER B 130 N VAL B 117 SHEET 1 AB8 7 PHE B 153 PRO B 159 0 SHEET 2 AB8 7 TRP B 190 ASN B 195 -1 O TRP B 190 N CYS B 155 SHEET 3 AB8 7 ALA B 200 ASN B 205 -1 O ALA B 200 N ASN B 195 SHEET 4 AB8 7 TRP B 238 PRO B 242 -1 O TRP B 238 N TYR B 201 SHEET 5 AB8 7 THR B 249 ASN B 254 -1 O THR B 253 N LEU B 239 SHEET 6 AB8 7 TRP B 288 ARG B 291 -1 O TRP B 288 N TYR B 250 SHEET 7 AB8 7 PHE B 153 PRO B 159 -1 N SER B 158 O ASN B 289 SHEET 1 AB9 2 LYS B 165 GLN B 169 0 SHEET 2 AB9 2 VAL B 177 THR B 181 -1 O ASN B 178 N GLN B 168 SHEET 1 AC1 2 GLY B 211 TRP B 215 0 SHEET 2 AC1 2 VAL B 223 SER B 227 -1 O ARG B 224 N THR B 214 SHEET 1 AC2 2 LYS B 260 LEU B 264 0 SHEET 2 AC2 2 ILE B 275 ASN B 279 -1 O PHE B 278 N ALA B 261 CISPEP 1 ALA A 77 PRO A 78 0 2.67 CISPEP 2 ALA B 77 PRO B 78 0 7.56 CRYST1 105.868 118.928 162.197 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006165 0.00000